Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019433

Physical Location & Seq

Genomic Coordinates Reverse (-)

60422029 .. 60425219

Gene Structure 3191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG423000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAACTCCTCCTTACTTTTCTTGACTCTTCTAACTCTTCTTTTCGTCTCTAACCCATCTTCTTCTTCTTCTTCAACCCAAGTGTTTGAAGCTTGGTGCAAAGAGTATGGCAAGTCATACTCTTCAGAACTAGAAGAGCTTTACAGGCGCAGTGTGTTTGAGCAAAACCTTGCCTTGATTACCCAACACAACGAAATGGCTTTTTCTTATACCCTTTCCCTGAATTCGTTTTCTGATATGACCCAAAATGAGTTCAGGGCCTCTCGCTTAGGCTTCAGGCCTATATTTCTCACTATTGAGCACAATGCAGAGAAGAAATCCAGTGTGGCTAGTGATGTTCCTTCTTCAATGGATTGGAGGGAGAAAGGGGCTGTGACTAGTGTTAAAGATCAAGGGCATTGTGGTTCTTCTTGGGCGTTCTCGGCTATTGGTGCCATCGAAGGTATCAACAAGATTGTGACTGGATCACTTATCAGCCTCTCTGAACAAGAGTTGATGGATTGTAACAAAGGTCTCACAACTAGAGGCTGCAGCGGCGGACAAGTGGCCAGTGCATTTCAATTTGTCATGAAAAACAAGGGAATTGACACTGATATGGACTACCCGTATCAATCTTGGGATATGGACTGCAATCAGGAAAAGGTAAATAGGCGTGTTGTGACGATTGATTCTTTTAAATATGTGCCCCTATATGATGAGGAACAACTACTACAAGCTGTGGCAAGGCAACCTGTGAGTGCAAGTATCGCTGCCAGTAGCTTTGCTTTTCAATTCTACTCAAAGGGGATTGTCACTGGTTCATGTTCGACTTTGTTGGATCATGCTGTATTAATCGTAGGTTATGGTTCAGAAAATGGAGTGGACTATTGGATTTTAAAGAATTCATGGGGCAAACGTTGGGGAATGGATGGCTATATGTATCTGCAACGTGATCATGGAAATCGCAAAGGGCTCTGTGGTATCAACATGTTTGCTTTATATCCAATAAAGACTGGTGCAAATCCTCCTCCACCAGGTCCTGTGAATTGTGATAGTAATGGAGGGGAAACCTGCTGTTGTTGGATGTGGTTTCGTGGAACATGCCGTTCTTGGACATGTTGTGACAACTTTGGTGTCTGTTGTGAGGATCTCATTCACTGTTGCCCCCCTGAGTATCCAATTTGTGATACAGAAAGGAAATTGTGCTTACAGGTTCGTAACAACTGTTACTTATTCAAGTTAGAAAGAACTATGAAGCTTGATTTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

416

Amino Acids

46.74

Weight (kDa)

5.64

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	29 - 85	6.4e-18	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	113 - 329	4.2e-76	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301921
rosa_laevigata	RLG00000011205
rosa_roxburghii	Rroxscaffold_7G00166260
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422800 Rh6BG429600 Rh6DG423000
rosa_wichuraiana	Rw6G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1058
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	2 cut(s)	534, 537
AclI	AACGTT	1 cut(s)	895
AclWI	GGATC	3 cut(s)	472, 825, 1134
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	2 cut(s)	223, 880
AcuI	CTGAAG	2 cut(s)	108, 259
AfiI	CCNNNNNNNGG	1 cut(s)	1013
AflIII	ACRYGT	2 cut(s)	966, 1094
AgsI	TTSAA	6 cut(s)	75, 89, 348, 560, 770, 1216
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	1012
AluBI	AGCT	5 cut(s)	92, 139, 716, 759, 1237
AluI	AGCT	5 cut(s)	92, 139, 716, 759, 1237
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	2 cut(s)	52, 518
AlwI	GGATC	3 cut(s)	472, 825, 1134
AlwNI	CAGNNNCTG	1 cut(s)	1019
AoxI	GGCC	3 cut(s)	258, 278, 546
ApeKI	GCWGC	3 cut(s)	528, 531, 749
ApoI	RAATTY	2 cut(s)	223, 880
AseI	ATTAAT	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	258, 1016
AvaII	GGWCC	1 cut(s)	1016
BaeGI	GKGCMC	1 cut(s)	687
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	515, 543, 736
BccI	CCATC	4 cut(s)	64, 443, 490, 902
BceAI	ACGGC	1 cut(s)	1068
BciT130I	CCWGG	1 cut(s)	1014
BciVI	GTATCC	1 cut(s)	1164
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	2 cut(s)	52, 518
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	4 cut(s)	131, 330, 378, 522
BfmI	CTRYAG	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	1058
BfuI	GTATCC	1 cut(s)	1164
BisI	GCNGC	4 cut(s)	529, 532, 535, 750
BlsI	GCNGC	4 cut(s)	530, 533, 536, 751
Bme1390I	CCNGG	1 cut(s)	1014
Bme18I	GGWCC	1 cut(s)	1016
BmgT120I	GGNCC	2 cut(s)	258, 1016
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	1 cut(s)	1014
Bpu10I	CCTNAGC	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	518
Bsc4I	CCNNNNNNNGG	1 cut(s)	1013
Bse1I	ACTGG	6 cut(s)	321, 466, 549, 753, 799, 997
BseBI	CCWGG	1 cut(s)	1014
BseGI	GGATG	2 cut(s)	913, 1068
BseLI	CCNNNNNNNGG	1 cut(s)	1013
BseMII	CTCAG	1 cut(s)	1140
BseNI	ACTGG	6 cut(s)	321, 466, 549, 753, 799, 997
BseRI	GAGGAG	1 cut(s)	996
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	515, 543, 736
BshFI	GGCC	3 cut(s)	260, 280, 548
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	1013
BsmAI	GTCTC	2 cut(s)	52, 518
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	260, 280, 548
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	3 cut(s)	303, 687, 954
Bsp143I	GATC	5 cut(s)	388, 464, 817, 931, 1126
BspACI	CCGC	2 cut(s)	534, 537
BspANI	GGCC	3 cut(s)	260, 280, 548
BspCNI	CTCAG	1 cut(s)	1141
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	433
BspMAI	CTGCAG	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	1058
BspPI	GGATC	3 cut(s)	472, 825, 1134
BspQI	GCTCTTC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	518
BsrI	ACTGG	6 cut(s)	321, 466, 549, 753, 799, 997
BssMI	GATC	5 cut(s)	388, 464, 817, 931, 1126
Bst2UI	CCWGG	1 cut(s)	1014
Bst4CI	ACNGT	2 cut(s)	1139, 1205
Bst6I	CTCTTC	4 cut(s)	33, 42, 127, 129
BstDEI	CTNAG	2 cut(s)	268, 1149
BstENI	CCTNNNNNAGG	1 cut(s)	1011
BstF5I	GGATG	2 cut(s)	913, 1068
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	5 cut(s)	391, 467, 820, 934, 1129
BstMAI	GTCTC	2 cut(s)	52, 518
BstMBI	GATC	5 cut(s)	388, 464, 817, 931, 1126
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 422, 431, 534, 746
BstNI	CCWGG	1 cut(s)	1014
BstNSI	RCATGY	3 cut(s)	970, 1083, 1098
BstSCI	CCNGG	1 cut(s)	1012
BstSFI	CTRYAG	1 cut(s)	529
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	3 cut(s)	515, 543, 736
BstX2I	RGATCY	1 cut(s)	1126
BstYI	RGATCY	1 cut(s)	1126
BsuI	GTATCC	1 cut(s)	1164
BsuRI	GGCC	3 cut(s)	260, 280, 548
BtsCI	GGATG	2 cut(s)	913, 1068
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	6 cut(s)	157, 328, 556, 588, 792, 1135
BveI	ACCTGC	1 cut(s)	1058
CaiI	CAGNNNCTG	1 cut(s)	1019
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	258, 1016
CsiI	ACCWGGT	1 cut(s)	1012
CviAII	CATG	8 cut(s)	568, 801, 821, 885, 935, 967, 1080, 1095
DdeI	CTNAG	2 cut(s)	268, 1149
DpnI	GATC	5 cut(s)	390, 466, 819, 933, 1128
DpnII	GATC	5 cut(s)	388, 464, 817, 931, 1126
DraI	TTTAAA	2 cut(s)	676, 876
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	4 cut(s)	33, 42, 127, 129
EarI	CTCTTC	4 cut(s)	33, 42, 127, 129
EciI	GGCGGA	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	954
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	1 cut(s)	1016
Eco57I	CTGAAG	2 cut(s)	108, 259
EcoNI	CCTNNNNNAGG	1 cut(s)	1011
EcoO109I	RGGNCCY	2 cut(s)	258, 1016
EcoRI	GAATTC	2 cut(s)	223, 880
EcoRII	CCWGG	1 cut(s)	1012
EcoT38I	GRGCYC	1 cut(s)	954
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	8 cut(s)	571, 804, 824, 888, 938, 970, 1083, 1098
FatI	CATG	8 cut(s)	567, 800, 820, 884, 934, 966, 1079, 1094
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	4 cut(s)	529, 532, 535, 750
FokI	GGATG	2 cut(s)	920, 1075
FriOI	GRGCYC	1 cut(s)	954
Fsp4HI	GCNGC	4 cut(s)	529, 532, 535, 750
FspBI	CTAG	4 cut(s)	131, 330, 378, 522
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	4 cut(s)	529, 532, 535, 750
HaeIII	GGCC	3 cut(s)	260, 280, 548
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	8 cut(s)	571, 804, 824, 888, 938, 970, 1083, 1098
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	2 cut(s)	90, 1235
HinfI	GANTC	2 cut(s)	25, 668
Hpy166II	GTNNAC	1 cut(s)	862
Hpy188I	TCNGA	4 cut(s)	127, 235, 484, 850
Hpy188III	TCNNGA	3 cut(s)	22, 568, 635
Hpy8I	GTNNAC	1 cut(s)	862
HpyAV	CCTTC	2 cut(s)	351, 434
HpyCH4III	ACNGT	2 cut(s)	1139, 1205
HpyCH4IV	ACGT	2 cut(s)	895, 928
HpyCH4V	TGCA	8 cut(s)	99, 308, 531, 554, 630, 740, 925, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 422, 431, 534, 746
HpyF3I	CTNAG	2 cut(s)	268, 1149
HpySE526I	ACGT	2 cut(s)	895, 928
Hsp92II	CATG	8 cut(s)	571, 804, 824, 888, 938, 970, 1083, 1098
HspAI	GCGC	1 cut(s)	148
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	5 cut(s)	388, 464, 817, 931, 1126
LguI	GCTCTTC	1 cut(s)	129
Lsp1109I	GCAGC	3 cut(s)	515, 543, 736
MabI	ACCWGGT	1 cut(s)	1012
MaeI	CTAG	4 cut(s)	131, 330, 378, 522
MaeII	ACGT	2 cut(s)	895, 928
MaeIII	GTNAC	8 cut(s)	373, 457, 503, 658, 790, 1100, 1196, 1205
MalI	GATC	5 cut(s)	390, 466, 819, 933, 1128
MboI	GATC	5 cut(s)	388, 464, 817, 931, 1126
MflI	RGATCY	1 cut(s)	1126
MhlI	GDGCHC	3 cut(s)	303, 687, 954
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	8 cut(s)	223, 560, 582, 770, 880, 1024, 1158, 1178
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	2 cut(s)	795, 1040
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	4 cut(s)	384, 675, 830, 875
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	1014
MvaI	CCWGG	1 cut(s)	1014
MwoI	GCNNNNNNNGC	5 cut(s)	145, 422, 431, 534, 746
NdeII	GATC	5 cut(s)	388, 464, 817, 931, 1126
NlaIII	CATG	8 cut(s)	571, 804, 824, 888, 938, 970, 1083, 1098
NlaIV	GGNNCC	1 cut(s)	433
NmeAIII	GCCGAG	1 cut(s)	401
NmuCI	GTSAC	5 cut(s)	373, 457, 658, 790, 1100
NspI	RCATGY	3 cut(s)	970, 1083, 1098
PagI	TCATGA	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	280
PciI	ACATGT	2 cut(s)	966, 1094
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	4 cut(s)	530, 533, 536, 751
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	1016
PscI	ACATGT	2 cut(s)	966, 1094
PshBI	ATTAAT	1 cut(s)	830
Psp1406I	AACGTT	1 cut(s)	895
Psp5II	RGGWCCY	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	1012
PspGI	CCWGG	1 cut(s)	1012
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	2 cut(s)	258, 1016
PspPPI	RGGWCCY	1 cut(s)	1016
PsrI	GAACNNNNNNTAC	2 cut(s)	693, 725
PstI	CTGCAG	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	1019
PsuI	RGATCY	1 cut(s)	1126
RseI	CAYNNNNRTG	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	384, 675, 830, 875
SatI	GCNGC	4 cut(s)	529, 532, 535, 750
Sau3AI	GATC	5 cut(s)	388, 464, 817, 931, 1126
Sau96I	GGNCC	2 cut(s)	258, 1016
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	1014
SduI	GDGCHC	3 cut(s)	303, 687, 954
SexAI	ACCWGGT	1 cut(s)	1012
SfcI	CTRYAG	1 cut(s)	529
SinI	GGWCC	1 cut(s)	1016
SmiMI	CAYNNNNRTG	1 cut(s)	593
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	8 cut(s)	223, 560, 582, 770, 880, 1024, 1158, 1178
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	534, 537
SspMI	CTAG	4 cut(s)	131, 330, 378, 522
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	1012
TaaI	ACNGT	2 cut(s)	1139, 1205
TaiI	ACGT	2 cut(s)	898, 931
TaqI	TCGA	2 cut(s)	438, 806
TasI	AATT	8 cut(s)	223, 560, 582, 770, 880, 1024, 1158, 1178
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	4 cut(s)	384, 675, 830, 875
Tru9I	TTAA	4 cut(s)	384, 675, 830, 875
TscAI	CASTG	6 cut(s)	157, 328, 556, 595, 799, 1142
TseFI	GTSAC	5 cut(s)	373, 457, 658, 790, 1100
TseI	GCWGC	3 cut(s)	528, 531, 749
Tsp45I	GTSAC	5 cut(s)	373, 457, 658, 790, 1100
TspDTI	ATGAA	5 cut(s)	17, 584, 789, 873, 1247
TspRI	CASTG	6 cut(s)	157, 328, 556, 595, 799, 1142
VpaK11BI	GGWCC	1 cut(s)	1016
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	1011
XapI	RAATTY	2 cut(s)	223, 880
XceI	RCATGY	3 cut(s)	970, 1083, 1098
XspI	CTAG	4 cut(s)	131, 330, 378, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.