Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0019433

Physical Location & Seq

Genomic Coordinates Reverse (-)

61085570 .. 61088236

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTTTTTCTTATACCCTCTCCCTGAATTCGTTTTCTGATATGACCCAAAATGAGTTCAGGGCCTCTCGCTTAGGCTTCAGGCCTATATTTCTCACTATTGAGCACAATGCAGAGAAGAAATCCAGTGTGGCTAGTGATGTTCCTTCTTCAATGGATTGGAGGGAGAAAGGGGCTGTGACTAGCGTTAAAGATCAAGGGGATTGTGGTTCTTCTTGGGCATTCTCGGCTATTGGTGCCATCGAAGGTATCAACAAGATTGTGACTGGATCACTTATCAGCCTCTCTGAACAAGAGTTGATGGATTGTAACAAAGGTCTCACAACTAGAGGCTGCAGTGGCGGACAAGTGGCCAGTGCATTTCAATTTGTCATGAAAAACAAGGGAATTGACACAGATAAGGACTACCCGTATCAAGCTTGGGATATGGACTGCAATCAGGAAAAGGTAAATAGGCGTGTTGTGACGATTGATTCTTTTAAATATGTGCCCCTATATGATGAGGAACAACTACTACAAGCTGTGGCAAGGCAACCTGTGAGTGCAAGTATCGCTGCCAGTAGCTTTGCTTTTCAGTTCTACTCAAAGGGGATTGTCACTGGTTCATGTTCGACTTTGTTGGATCATGCTGTATTAATCGTAGGTTATGGTTCAGAAAATGGAGTGGATTATTGGATTTTAAAGAATTCATGGGGGAAACGTTGGGGAATGGATGGCTATATGTATCTGCAACGTGATCATGGAAATCGCAAAGGGCTCTGTGGTATCAACATGTTTGCTTTATATCCAATAAAGACTGGTGCAAATCCTCCTCCGCCAGGTCCTGTGAATTGTGATAGTAATGGAGGGGAAACCTGCTGTTGTTGGATGTGGTTTCATGGAACTTGCCGTTCTTGGACATGTTGTGACAACTTTGGTGTCTGTTGTGAGGATCTCATTCACTGTTGCCCCCCTGAGTATCCAATTTGTGATACAGAAAGGAAATTGTGCTTACAGGCTTATGGGAACTTAACAATGAAAGTGCATGAGAGTAGAAGCAGTGCTAGGAAGTTGGGTACAAGCAATGTTGCTCGGAAGTTGGGTACAGGCAGTGTTGCTGGGAAGTCATGGCAACCGCGACTACAGCCTTTCTTTATTGGGGATTGGCCTATACCAATCCCTCCTAGCCCTGTTCAAGTAATACTGACGAACAATGTGTCATACTTCGTGGCAAGGAATAATTCTTCTGCTGATCGATCCAAATCGATTCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

418

Amino Acids

46.22

Weight (kDa)

7.77

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	48 - 264	1e-76	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019433)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0301921
rosa_laevigata	RLG00000011205
rosa_roxburghii	Rroxscaffold_7G00166260
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422800 Rh6BG429600 Rh6DG423000
rosa_wichuraiana	Rw6G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	1 cut(s)	1117
AciI	CCGC	3 cut(s)	342, 815, 1115
AclI	AACGTT	1 cut(s)	700
AclWI	GGATC	4 cut(s)	277, 630, 939, 1230
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	28, 685
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	1057, 1084
AfiI	CCNNNNNNNGG	1 cut(s)	818
AflIII	ACRYGT	2 cut(s)	771, 899
AgsI	TTSAA	3 cut(s)	153, 365, 1175
AjnI	CCWGG	1 cut(s)	817
AluBI	AGCT	3 cut(s)	419, 521, 564
AluI	AGCT	3 cut(s)	419, 521, 564
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	4 cut(s)	277, 630, 939, 1230
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	4 cut(s)	63, 83, 351, 1145
ApeKI	GCWGC	2 cut(s)	333, 554
ApoI	RAATTY	2 cut(s)	28, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
AseI	ATTAAT	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	63, 821
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	320, 541
BccI	CCATC	3 cut(s)	248, 295, 707
BceAI	ACGGC	1 cut(s)	873
BciT130I	CCWGG	1 cut(s)	819
BciVI	GTATCC	1 cut(s)	969
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
BfmI	CTRYAG	2 cut(s)	334, 1121
BfuAI	ACCTGC	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	969
BisI	GCNGC	2 cut(s)	334, 555
BlsI	GCNGC	2 cut(s)	335, 556
Bme1390I	CCNGG	1 cut(s)	819
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	2 cut(s)	63, 821
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	73
Bsa29I	ATCGAT	2 cut(s)	1234, 1244
BsaBI	GATNNNNATC	1 cut(s)	1240
BsaI	GGTCTC	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	818
Bse1I	ACTGG	6 cut(s)	126, 271, 354, 558, 604, 802
Bse3DI	GCAATG	1 cut(s)	1069
Bse8I	GATNNNNATC	1 cut(s)	1240
BseBI	CCWGG	1 cut(s)	819
BseCI	ATCGAT	2 cut(s)	1234, 1244
BseGI	GGATG	2 cut(s)	718, 873
BseJI	GATNNNNATC	1 cut(s)	1240
BseLI	CCNNNNNNNGG	1 cut(s)	818
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	1 cut(s)	945
BseNI	ACTGG	6 cut(s)	126, 271, 354, 558, 604, 802
BseRI	GAGGAG	1 cut(s)	801
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	320, 541
BseYI	CCCAGC	1 cut(s)	1097
Bsh1236I	CGCG	1 cut(s)	1117
BshFI	GGCC	4 cut(s)	65, 85, 353, 1147
BshNI	GGYRCC	1 cut(s)	236
BshVI	ATCGAT	2 cut(s)	1234, 1244
BsiHKAI	GWGCWC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	818
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	65, 85, 353, 1147
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	3 cut(s)	108, 492, 759
Bsp143I	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
BspACI	CCGC	3 cut(s)	342, 815, 1115
BspANI	GGCC	4 cut(s)	65, 85, 353, 1147
BspCNI	CTCAG	1 cut(s)	946
BspDI	ATCGAT	2 cut(s)	1234, 1244
BspFNI	CGCG	1 cut(s)	1117
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	238
BspMAI	CTGCAG	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	4 cut(s)	277, 630, 939, 1230
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	1069
BsrI	ACTGG	6 cut(s)	126, 271, 354, 558, 604, 802
BssMI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	1 cut(s)	944
BstDEI	CTNAG	2 cut(s)	73, 954
BstENI	CCTNNNNNAGG	1 cut(s)	816
BstF5I	GGATG	2 cut(s)	718, 873
BstFNI	CGCG	1 cut(s)	1117
BstKTI	GATC	7 cut(s)	196, 272, 625, 739, 934, 1234, 1238
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 236, 339, 551, 1123
BstNI	CCWGG	1 cut(s)	819
BstNSI	RCATGY	2 cut(s)	775, 903
BstSCI	CCNGG	1 cut(s)	817
BstSFI	CTRYAG	2 cut(s)	334, 1121
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	1 cut(s)	1117
BstV1I	GCAGC	2 cut(s)	320, 541
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
Bsu15I	ATCGAT	2 cut(s)	1234, 1244
BsuI	GTATCC	1 cut(s)	969
BsuRI	GGCC	4 cut(s)	65, 85, 353, 1147
BsuTUI	ATCGAT	2 cut(s)	1234, 1244
BtsCI	GGATG	2 cut(s)	718, 873
BtsI	GCAGTG	3 cut(s)	343, 1045, 1096
BtsIMutI	CAGTG	7 cut(s)	133, 343, 361, 597, 940, 1045, 1096
BveI	ACCTGC	1 cut(s)	863
CaiI	CAGNNNCTG	1 cut(s)	824
CciI	TCATGA	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	63, 821
ClaI	ATCGAT	2 cut(s)	1234, 1244
Csp6I	GTAC	2 cut(s)	1056, 1083
CviQI	GTAC	2 cut(s)	1056, 1083
DdeI	CTNAG	2 cut(s)	73, 954
DpnI	GATC	7 cut(s)	195, 271, 624, 738, 933, 1233, 1237
DpnII	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
DraI	TTTAAA	2 cut(s)	481, 681
EaeI	YGGCCR	1 cut(s)	351
EciI	GGCGGA	2 cut(s)	357, 804
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	816
EcoO109I	RGGNCCY	2 cut(s)	63, 821
EcoRI	GAATTC	2 cut(s)	28, 685
EcoRII	CCWGG	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	334, 555
FokI	GGATG	2 cut(s)	725, 880
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	2 cut(s)	334, 555
FspBI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
GluI	GCNGC	2 cut(s)	334, 555
GsaI	CCCAGC	1 cut(s)	1101
HaeIII	GGCC	4 cut(s)	65, 85, 353, 1147
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	2 cut(s)	473, 1246
Hpy188I	TCNGA	4 cut(s)	40, 289, 655, 1074
Hpy188III	TCNNGA	2 cut(s)	373, 440
HpyAV	CCTTC	2 cut(s)	156, 239
HpyCH4III	ACNGT	1 cut(s)	944
HpyCH4IV	ACGT	2 cut(s)	700, 733
HpyCH4V	TGCA	8 cut(s)	113, 336, 359, 435, 545, 730, 803, 1024
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 236, 339, 551, 1123
HpyF3I	CTNAG	2 cut(s)	73, 954
HpySE526I	ACGT	2 cut(s)	700, 733
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
Lsp1109I	GCAGC	2 cut(s)	320, 541
MaeI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
MaeII	ACGT	2 cut(s)	700, 733
MaeIII	GTNAC	6 cut(s)	178, 262, 308, 463, 595, 905
MalI	GATC	7 cut(s)	195, 271, 624, 738, 933, 1233, 1237
MboI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
MboII	GAAGA	4 cut(s)	130, 141, 204, 1215
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	3 cut(s)	108, 492, 759
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	8 cut(s)	28, 365, 387, 685, 829, 963, 983, 1219
MluNI	TGGCCA	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	600, 845
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
Msp20I	TGGCCA	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	819
MvnI	CGCG	1 cut(s)	1117
MwoI	GCNNNNNNNGC	5 cut(s)	227, 236, 339, 551, 1123
NdeII	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
NlaIV	GGNNCC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	5 cut(s)	178, 262, 463, 595, 905
NspI	RCATGY	2 cut(s)	775, 903
PagI	TCATGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	85
PciI	ACATGT	2 cut(s)	771, 899
PctI	GAATGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	473, 1246
PkrI	GCNGC	2 cut(s)	335, 556
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	2 cut(s)	771, 899
PshBI	ATTAAT	1 cut(s)	635
Psp1406I	AACGTT	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	1097
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	63, 821
PspPPI	RGGWCCY	1 cut(s)	821
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PstI	CTGCAG	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	931
RsaI	GTAC	2 cut(s)	1057, 1084
RsaNI	GTAC	2 cut(s)	1056, 1083
SaqAI	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
SatI	GCNGC	2 cut(s)	334, 555
Sau3AI	GATC	7 cut(s)	193, 269, 622, 736, 931, 1231, 1235
Sau96I	GGNCC	2 cut(s)	63, 821
ScrFI	CCNGG	1 cut(s)	819
SduI	GDGCHC	3 cut(s)	108, 492, 759
SfcI	CTRYAG	2 cut(s)	334, 1121
SinI	GGWCC	1 cut(s)	821
Sse9I	AATT	8 cut(s)	28, 365, 387, 685, 829, 963, 983, 1219
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	342, 815, 1115
SspMI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	817
TaaI	ACNGT	1 cut(s)	944
TaiI	ACGT	2 cut(s)	703, 736
TaqI	TCGA	4 cut(s)	243, 611, 1234, 1244
TasI	AATT	8 cut(s)	28, 365, 387, 685, 829, 963, 983, 1219
TfiI	GAWTC	2 cut(s)	473, 1246
Tru1I	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
Tru9I	TTAA	6 cut(s)	189, 480, 635, 680, 1010, 1255
TscAI	CASTG	7 cut(s)	133, 343, 361, 604, 947, 1045, 1096
TseFI	GTSAC	5 cut(s)	178, 262, 463, 595, 905
TseI	GCWGC	2 cut(s)	333, 554
Tsp45I	GTSAC	5 cut(s)	178, 262, 463, 595, 905
TspDTI	ATGAA	5 cut(s)	389, 594, 678, 866, 1031
TspRI	CASTG	7 cut(s)	133, 343, 361, 604, 947, 1045, 1096
VpaK11BI	GGWCC	1 cut(s)	821
VspI	ATTAAT	1 cut(s)	635
XagI	CCTNNNNNAGG	1 cut(s)	816
XapI	RAATTY	2 cut(s)	28, 685
XceI	RCATGY	2 cut(s)	775, 903
XspI	CTAG	5 cut(s)	135, 183, 327, 1044, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.