Rroxscaffold_7G00184610

Iron/zinc purple acid phosphatase-like protein C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019737
Physical Location & Seq
Reverse (-)
23929048 .. 23934640
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184610.1

Sequence Viewer

Length: 459 bp
ATGCTGAATGTTGCTCTGCTTTGCTTCAATAATAATAAGGTCCATGCCTACGAGAGGTCAAATCGAGTTTATAATTACACATTAGATCCATGTGGTCCTGTGCATATCACTATTGGTGATGGAGGTAATCGAGAGAAGATGGCAATCCGACATGCTGATGAACCTGGTCTGTGCCCAAAGCCAAGTGCTGATGAATACCTCGGCATGTGTGCAAGAAATTTTACATCCGGTCCAGCAGCTGGTAAATTTTGTTGGGATCGGCAACCAGATTACAGTGCTTTCAGAGAAAGCAGCTTTGGCCATGGGATCCTTGAGGTGAAGAATGAGACTTGGGCTCTATGGACATGGTACCGAAATCAGGACTCTGAAGATAATGTGGGGGATCAAATTTACATAGTGAGGGAACCAGATAGATGCCTTGTCCGGCAGGTGGTTGAAAGTTGGCCTACTGATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

152

Amino Acids

17.39

Weight (kDa)

5.33

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos_C PF14008 82 - 128 1e-10 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0019737)

Species Orthologous Gene IDs
malus_domestica MD10G1162700.v1.1
pyrus_communis pycom10g14010
rosa_multiflora Rmu_sc0000635.1_g000002 Rmu_sc0003748.1_g000015
rosa_roxburghii Rroxscaffold_3G00235640 Rroxscaffold_5G00358910 Rroxscaffold_7G00184610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AarI CACCTGC 1 cut(s) 418
Acc36I ACCTGC 1 cut(s) 418
Acc65I GGTACC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 239
AclWI GGATC 5 cut(s) 80, 264, 301, 314, 390
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 3 cut(s) 217, 245, 387
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 4 cut(s) 54, 239, 358, 430
AgsI TTSAA 2 cut(s) 28, 437
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 2 cut(s) 239, 294
AluI AGCT 2 cut(s) 239, 294
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 5 cut(s) 80, 264, 301, 314, 390
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 2 cut(s) 298, 443
ApeKI GCWGC 2 cut(s) 236, 291
ApoI RAATTY 3 cut(s) 217, 245, 387
Asp718I GGTACC 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 40, 95, 230
AsuHPI GGTGA 2 cut(s) 128, 328
AvaII GGWCC 3 cut(s) 40, 95, 230
BaeGI GKGCMC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 300
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 248, 303
BccI CCATC 2 cut(s) 113, 133
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 418
BisI GCNGC 2 cut(s) 237, 292
BlsI GCNGC 2 cut(s) 238, 293
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 3 cut(s) 40, 95, 230
BmgT120I GGNCC 3 cut(s) 40, 95, 230
BmiI GGNNCC 3 cut(s) 308, 350, 405
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 199, 301
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 239, 358, 430
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 199, 301
BseGI GGATG 1 cut(s) 224
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 4 cut(s) 54, 239, 358, 430
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 248, 303
BshFI GGCC 2 cut(s) 300, 445
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 228, 424
BslI CCNNNNNNNGG 4 cut(s) 54, 239, 358, 430
BsmAI GTCTC 1 cut(s) 320
BsnI GGCC 2 cut(s) 300, 445
Bsp1286I GDGCHC 2 cut(s) 176, 337
Bsp143I GATC 5 cut(s) 85, 256, 306, 382, 451
Bsp19I CCATGG 1 cut(s) 301
BspANI GGCC 2 cut(s) 300, 445
BspLI GGNNCC 3 cut(s) 308, 350, 405
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 5 cut(s) 80, 264, 301, 314, 390
BspT107I GGYRCC 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 199, 301
BssMI GATC 5 cut(s) 85, 256, 306, 382, 451
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 5 cut(s) 88, 259, 309, 385, 454
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 5 cut(s) 85, 256, 306, 382, 451
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 2 cut(s) 155, 208
BstSCI CCNGG 1 cut(s) 163
BstSLI GKGCMC 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 248, 303
BstX2I RGATCY 2 cut(s) 85, 306
BstYI RGATCY 2 cut(s) 85, 306
BsuRI GGCC 2 cut(s) 300, 445
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 280
BveI ACCTGC 1 cut(s) 418
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 40, 95, 230
CsiI ACCWGGT 1 cut(s) 163
Csp6I GTAC 1 cut(s) 349
CviAII CATG 6 cut(s) 44, 90, 152, 205, 302, 345
CviJI RGCY 6 cut(s) 181, 239, 294, 300, 335, 445
CviKI_1 RGCY 6 cut(s) 181, 239, 294, 300, 335, 445
CviQI GTAC 1 cut(s) 349
DpnI GATC 5 cut(s) 87, 258, 308, 384, 453
DpnII GATC 5 cut(s) 85, 256, 306, 382, 451
EaeI YGGCCR 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 40, 95, 230
Eco57I CTGAAG 1 cut(s) 387
EcoNI CCTNNNNNAGG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 6 cut(s) 47, 93, 155, 208, 305, 348
FatI CATG 6 cut(s) 43, 89, 151, 204, 301, 344
Fnu4HI GCNGC 2 cut(s) 237, 292
FokI GGATG 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 2 cut(s) 237, 292
GluI GCNGC 2 cut(s) 237, 292
HaeIII GGCC 2 cut(s) 300, 445
HapII CCGG 2 cut(s) 228, 424
Hin1II CATG 6 cut(s) 47, 93, 155, 208, 305, 348
HinfI GANTC 1 cut(s) 362
HpaII CCGG 2 cut(s) 228, 424
HphI GGTGA 2 cut(s) 128, 328
Hpy188I TCNGA 3 cut(s) 149, 284, 367
Hpy188III TCNNGA 2 cut(s) 131, 359
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 103, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
Hsp92II CATG 6 cut(s) 47, 93, 155, 208, 305, 348
KpnI GGTACC 1 cut(s) 352
Kzo9I GATC 5 cut(s) 85, 256, 306, 382, 451
Lsp1109I GCAGC 2 cut(s) 248, 303
LweI GCATC 1 cut(s) 404
MabI ACCWGGT 1 cut(s) 163
MalI GATC 5 cut(s) 87, 258, 308, 384, 453
MboI GATC 5 cut(s) 85, 256, 306, 382, 451
MboII GAAGA 3 cut(s) 148, 331, 380
MflI RGATCY 2 cut(s) 85, 306
MhlI GDGCHC 2 cut(s) 176, 337
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 4 cut(s) 73, 217, 245, 387
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 5 cut(s) 48, 116, 209, 307, 393
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 228, 424
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 297
NcoI CCATGG 1 cut(s) 301
NdeII GATC 5 cut(s) 85, 256, 306, 382, 451
NlaIII CATG 6 cut(s) 47, 93, 155, 208, 305, 348
NlaIV GGNNCC 3 cut(s) 308, 350, 405
NmeAIII GCCGAG 1 cut(s) 180
NspI RCATGY 2 cut(s) 155, 208
PaqCI CACCTGC 1 cut(s) 418
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 2 cut(s) 238, 293
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PsiI TTATAA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 308, 350, 405
PspPI GGNCC 3 cut(s) 40, 95, 230
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 2 cut(s) 85, 306
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 2 cut(s) 237, 292
Sau3AI GATC 5 cut(s) 85, 256, 306, 382, 451
Sau96I GGNCC 3 cut(s) 40, 95, 230
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 2 cut(s) 176, 337
SetI ASST 9 cut(s) 42, 59, 127, 166, 201, 241, 296, 318, 432
SexAI ACCWGGT 1 cut(s) 163
SfaNI GCATC 1 cut(s) 404
SinI GGWCC 3 cut(s) 40, 95, 230
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 73, 217, 245, 387
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 64, 130
TasI AATT 4 cut(s) 73, 217, 245, 387
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 236, 291
TspDTI ATGAA 2 cut(s) 174, 207
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 3 cut(s) 40, 95, 230
XagI CCTNNNNNAGG 1 cut(s) 52
XapI RAATTY 3 cut(s) 217, 245, 387
XceI RCATGY 2 cut(s) 155, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.