Rroxscaffold_7G00193090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0020640
Physical Location & Seq
Forward (+)
34455711 .. 34457839
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193090.1

Sequence Viewer

Length: 1308 bp
ATGGCTCCTAACATTACCTATGAAATTGAGAGTCACCACGAGTTCCCCTACGATTCTGATTCTGGGCAATCCTCAATTAAGTATTATCACGGCAGGTTGTTCTTCAATGCTGTTACTGCCCCCGAGGACGTGGTTGTGGACGTTTCCTTTATTGCTTTCGAAAACTCAACCCCTCCCGATAAAGTAGCTCAAATTTTCCACAGGAGCAGGAAGGCGAGTCATGATCGAGTTATGCGCCCGTGGTTTTTCACCCACGACGGCAATCTCAGGAAGCACATTTTGTGCTATGATCGATTTACCAAATTTTTACCCGAAATTTCACCCAGTTGGCTCAGTCAACCGCTGTCAAGTGATATTCCTGGACTGCCAAATCCAACACTAAAGCGAGAAATTCGGGAGTTAGCGATGGGCCTAGAACACCTGCACGATAATGATGTGTCTCATTCTGTCCTTAATTCACCCATGAGCTATGTGTGGTCAAATGACAAAGTAAAAATGATTAATATTGATGACTCAAAGTTCGACTTTTGGGATGAGCTTCACCCATCTGAATCCGAGAAGCAATGGCAACAGCGTAAGCGACACCATATCAACCAGTTTGGCACTGGACTCAAATACCTCCTGAGATCAGAGTTGTTTGGGCCCGAAAGGGATTCTTTTCTGAGGTGCTTTGCCTTGAATGTCAGCCTTGATAGGTACTTAAAGATGGTGTACACTCACCCCTTTTCGATGGAACACATGAAGAAGATATTGCAACTGTTTGCAGATGCACACCATGCCTATATTTCTCAAGATGGTGGTGGGCTTAGAGTCGATATTCTAAACTTGGCATTTCAACATAAAGTTCTGGATCGTGAGTACCTGAGTCCTGAAGTTGGTTGGCGCAGGCAGATGTGCACTGAATTTACTAAAATAATCCAGTTTGTGCACACCACTCCTCCTCCTCCCCAATCCAGTGGTTCTCCCCAATCTGCAAGCACTGGTGGTGGTTCTCCTCATCCTCATTTATTCAATCGCGCTCCTCTTCCTCCTCCTCCTTCTCAGTCAGGCAGTCGCCCTCCTCAGTCAGCCAGAGTCAGTATTGGTCATCACTCACCTTCTCAGTCATCTGCAAGCACTTCTGCTACTGCACCAACTACCACCACCCCACCTAACCAATATAAGACTAATGCGATGTCTGACCTTCTCAGATTTCTCAGAAATGTGTTTGAGCATTATTATCAGCAAAATATGTCATTGTTCGCGTTTTATGAGGAAGTCAGAAAGCATTGGGCACATTTTGTTGATAGGATTCACGAAAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

435

Amino Acids

50.17

Weight (kDa)

7.45

Isoelectric Point (pI)

66.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020640)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013336
rosa_roxburghii Rroxscaffold_7G00193090
rosa_rugosa Rorug06G0094900
rosa_samantha Rh6AG207200
rosa_wichuraiana Rw6G017970 Rw6G017990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 429
Acc36I ACCTGC 2 cut(s) 84, 429
AccII CGCG 2 cut(s) 1017, 1244
AciI CCGC 1 cut(s) 341
AclWI GGATC 1 cut(s) 858
AcsI RAATTY 5 cut(s) 192, 302, 315, 390, 902
AcuI CTGAAG 1 cut(s) 891
AfaI GTAC 3 cut(s) 698, 713, 860
AfiI CCNNNNNNNGG 1 cut(s) 875
AgsI TTSAA 4 cut(s) 106, 679, 836, 1012
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 3 cut(s) 188, 468, 538
AluI AGCT 3 cut(s) 188, 468, 538
Alw21I GWGCWC 2 cut(s) 899, 930
Alw26I GTCTC 1 cut(s) 444
Alw44I GTGCAC 2 cut(s) 895, 926
AlwI GGATC 1 cut(s) 858
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 409, 641
ApaI GGGCCC 1 cut(s) 645
ApaLI GTGCAC 2 cut(s) 895, 926
ApoI RAATTY 5 cut(s) 192, 302, 315, 390, 902
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AseI ATTAAT 1 cut(s) 501
AspLEI GCGC 3 cut(s) 237, 885, 1019
AspS9I GGNCC 3 cut(s) 409, 641, 642
AsuHPI GGTGA 7 cut(s) 26, 241, 312, 450, 533, 710, 1086
AsuII TTCGAA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 122
BaeGI GKGCMC 4 cut(s) 645, 899, 930, 1276
BanII GRGCYC 1 cut(s) 645
BauI CACGAG 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 899, 930
BccI CCATC 5 cut(s) 400, 553, 700, 724, 788
BceAI ACGGC 2 cut(s) 106, 274
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 413
BfuAI ACCTGC 2 cut(s) 84, 429
Bme1390I CCNGG 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 409, 641, 642
BmiI GGNNCC 2 cut(s) 6, 643
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 757
BmuI ACTGGG 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 774
Bsa29I ATCGAT 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 123, 239
BsaXI ACNNNNNCTCC 4 cut(s) 922, 925, 952, 955
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse1I ACTGG 6 cut(s) 324, 595, 610, 919, 954, 985
Bse3DI GCAATG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 123, 239
BseGI GGATG 2 cut(s) 538, 997
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMI GCAATG 1 cut(s) 569
BseNI ACTGG 6 cut(s) 324, 595, 610, 919, 954, 985
BseRI GAGGAG 8 cut(s) 927, 930, 933, 984, 1011, 1020, 1023, 1050
BseSI GKGCMC 4 cut(s) 645, 899, 930, 1276
BsgI GTGCAG 2 cut(s) 407, 1113
Bsh1236I CGCG 2 cut(s) 1017, 1244
BshFI GGCC 2 cut(s) 411, 643
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 899, 930
BsiHKCI CYCGRG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 875
BsmAI GTCTC 1 cut(s) 444
BsnI GGCC 2 cut(s) 411, 643
BsoBI CYCGRG 1 cut(s) 122
Bsp119I TTCGAA 1 cut(s) 159
Bsp120I GGGCCC 1 cut(s) 641
Bsp1286I GDGCHC 4 cut(s) 645, 899, 930, 1276
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 4 cut(s) 223, 289, 626, 850
BspACI CCGC 1 cut(s) 341
BspANI GGCC 2 cut(s) 411, 643
BspDI ATCGAT 1 cut(s) 292
BspFNI CGCG 2 cut(s) 1017, 1244
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 6, 643
BspMI ACCTGC 2 cut(s) 84, 429
BspPI GGATC 1 cut(s) 858
BspT104I TTCGAA 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 569
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 6 cut(s) 324, 595, 610, 919, 954, 985
BssECI CCNNGG 2 cut(s) 123, 239
BssMI GATC 4 cut(s) 223, 289, 626, 850
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 759
Bst6I CTCTTC 1 cut(s) 1029
BstAPI GCANNNNNTGC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 887, 976, 1114
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 538, 997
BstFNI CGCG 2 cut(s) 1017, 1244
BstHHI GCGC 3 cut(s) 237, 885, 1019
BstKTI GATC 4 cut(s) 226, 292, 629, 853
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 4 cut(s) 223, 289, 626, 850
BstMWI GCNNNNNNNGC 2 cut(s) 116, 776
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 358
BstSLI GKGCMC 4 cut(s) 645, 899, 930, 1276
BstUI CGCG 2 cut(s) 1017, 1244
BstXI CCANNNNNNTGG 1 cut(s) 956
Bsu15I ATCGAT 1 cut(s) 292
BsuRI GGCC 2 cut(s) 411, 643
BsuTUI ATCGAT 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 2 cut(s) 419, 1187
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 538, 997
BtsIMutI CAGTG 4 cut(s) 603, 897, 961, 978
BveI ACCTGC 2 cut(s) 84, 429
Cac8I GCNNGC 3 cut(s) 887, 976, 1114
CciI TCATGA 1 cut(s) 220
CfoI GCGC 3 cut(s) 237, 885, 1019
Cfr13I GGNCC 3 cut(s) 409, 641, 642
ClaI ATCGAT 1 cut(s) 292
Csp6I GTAC 3 cut(s) 697, 712, 859
CviAII CATG 4 cut(s) 221, 463, 739, 776
CviQI GTAC 3 cut(s) 697, 712, 859
DpnI GATC 4 cut(s) 225, 291, 628, 852
DpnII GATC 4 cut(s) 223, 289, 626, 850
Eam1104I CTCTTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 1029
Eco24I GRGCYC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 891
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 645
FaeI CATG 4 cut(s) 224, 466, 742, 779
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 640, 672
FatI CATG 4 cut(s) 220, 462, 738, 775
FokI GGATG 2 cut(s) 545, 984
FriOI GRGCYC 1 cut(s) 645
FspBI CTAG 1 cut(s) 413
GlaI GCGC 3 cut(s) 236, 884, 1018
HaeIII GGCC 2 cut(s) 411, 643
HhaI GCGC 3 cut(s) 237, 885, 1019
Hin1II CATG 4 cut(s) 224, 466, 742, 779
Hin6I GCGC 3 cut(s) 235, 883, 1017
HinP1I GCGC 3 cut(s) 235, 883, 1017
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HphI GGTGA 7 cut(s) 26, 241, 312, 450, 533, 710, 1086
Hpy166II GTNNAC 6 cut(s) 139, 338, 712, 714, 897, 928
Hpy188I TCNGA 9 cut(s) 58, 550, 556, 631, 663, 1180, 1190, 1199, 1262
Hpy8I GTNNAC 6 cut(s) 139, 338, 712, 714, 897, 928
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 205, 1047, 1107, 1193
HpyCH4III ACNGT 1 cut(s) 759
HpyCH4IV ACGT 2 cut(s) 129, 141
HpyCH4V TGCA 9 cut(s) 424, 754, 764, 770, 897, 928, 974, 1112, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 776
HpySE526I ACGT 2 cut(s) 129, 141
Hsp92II CATG 4 cut(s) 224, 466, 742, 779
HspAI GCGC 3 cut(s) 235, 883, 1017
Kzo9I GATC 4 cut(s) 223, 289, 626, 850
LmnI GCTCC 3 cut(s) 10, 204, 1024
LweI GCATC 1 cut(s) 757
MaeI CTAG 1 cut(s) 413
MaeII ACGT 2 cut(s) 129, 141
MaeIII GTNAC 2 cut(s) 32, 112
MalI GATC 4 cut(s) 225, 291, 628, 852
MboI GATC 4 cut(s) 223, 289, 626, 850
MboII GAAGA 4 cut(s) 94, 754, 757, 1016
MhlI GDGCHC 4 cut(s) 645, 899, 930, 1276
MluCI AATT 8 cut(s) 24, 75, 192, 302, 315, 390, 454, 902
MlyI GAGTC 7 cut(s) 40, 226, 506, 603, 819, 874, 1083
MmeI TCCRAC 1 cut(s) 398
MseI TTAA 4 cut(s) 78, 453, 501, 701
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MvnI CGCG 2 cut(s) 1017, 1244
MwoI GCNNNNNNNGC 2 cut(s) 116, 776
NdeII GATC 4 cut(s) 223, 289, 626, 850
NlaIII CATG 4 cut(s) 224, 466, 742, 779
NlaIV GGNNCC 2 cut(s) 6, 643
NmuCI GTSAC 1 cut(s) 32
NspV TTCGAA 1 cut(s) 159
PagI TCATGA 1 cut(s) 220
PaqCI CACCTGC 1 cut(s) 429
PfeI GAWTC 5 cut(s) 53, 59, 551, 653, 1291
PfoI TCCNGGA 1 cut(s) 358
PleI GAGTC 7 cut(s) 39, 225, 506, 603, 818, 873, 1082
PpsI GAGTC 7 cut(s) 39, 225, 506, 603, 818, 873, 1082
PshBI ATTAAT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 6, 643
PspOMI GGGCCC 1 cut(s) 641
PspPI GGNCC 3 cut(s) 409, 641, 642
RsaI GTAC 3 cut(s) 698, 713, 860
RsaNI GTAC 3 cut(s) 697, 712, 859
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 4 cut(s) 78, 453, 501, 701
Sau3AI GATC 4 cut(s) 223, 289, 626, 850
Sau96I GGNCC 3 cut(s) 409, 641, 642
SchI GAGTC 7 cut(s) 40, 226, 506, 603, 819, 874, 1083
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 4 cut(s) 645, 899, 930, 1276
SfaNI GCATC 1 cut(s) 757
SfuI TTCGAA 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 789
SmoI CTYRAG 1 cut(s) 789
Sse9I AATT 8 cut(s) 24, 75, 192, 302, 315, 390, 454, 902
SsiI CCGC 1 cut(s) 341
SspI AATATT 1 cut(s) 505
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 759
TaiI ACGT 2 cut(s) 132, 144
TaqI TCGA 6 cut(s) 159, 226, 292, 522, 728, 813
TasI AATT 8 cut(s) 24, 75, 192, 302, 315, 390, 454, 902
TatI WGTACW 1 cut(s) 711
TfiI GAWTC 5 cut(s) 53, 59, 551, 653, 1291
Tru1I TTAA 4 cut(s) 78, 453, 501, 701
Tru9I TTAA 4 cut(s) 78, 453, 501, 701
TscAI CASTG 4 cut(s) 610, 904, 961, 985
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 36, 755
TspRI CASTG 4 cut(s) 610, 904, 961, 985
VneI GTGCAC 2 cut(s) 895, 926
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 5 cut(s) 192, 302, 315, 390, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.