Rw6G017970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0020640
Physical Location & Seq
Reverse (-)
35559502 .. 35561002
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017970.1

Sequence Viewer

Length: 777 bp
ATGGATCCTAACATTACCTATCAAATTGATAGTCACCACGAGTTCCCCTACGATTCTGATTCTGGGCAATCCTCAATTAAGTATTATCATCACGGCAAGTTGTTCTTCAATGGTGGTACTGCCCCCGAGGGCGCGGTCGTGTACGTTTCCTTTATCGATTTCGAAAAGTCAACCCCTCTTGGTCATGTAGCTCAAATTTTCGAAAGGAGCAGGAAGGTGAGTCATGATCGAGTTATGCAGCCGCGGTTTTTCACCCACGACGGCAATCTCGGGAAGCAGATTTTGTGCTATGATCGATTTACCAATTTTTTACCAGAATTCTCACCCATTTGGCTCAGTGAACCACTTCTGAAAAGTGATATTCCTGGACTGCCAAATCCAACACTAAAGCAAGAAATTCGGGAGTTAGCGATGGGCCTAAAACACCTGCACGATAATGATGTGTCTCATTCTGCCCTTAATTCACCCCTGAGCTATGTGTGGTCAAATGGCAAAATTAAAATTATTAATGTTGATGACTCAAAGTTCGACTTTTGGGATGAGCTTGACCCATGCGAGAAGCAATGGCAAGGGCTCGCGCTCCTTTTCTTCCTACTTCTCAGTCAGCCAGAGGCACCAGTGGTTCTCCTCATCCTCAGTCAGGCAGTCGCCGTCGTCAGTCAGCCAGATGCAGTATTGGTCATCACTCATCTGCAGGCGCTTCTCAGCCATCTGCATGCACTTCTGCTACTGCACCAACTACCACCACCCCACCTGACCAATATAACATTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.27

Weight (kDa)

5.77

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020640)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013336
rosa_roxburghii Rroxscaffold_7G00193090
rosa_rugosa Rorug06G0094900
rosa_samantha Rh6AG207200
rosa_wichuraiana Rw6G017970 Rw6G017990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 613
AccII CGCG 3 cut(s) 134, 244, 578
AciI CCGC 3 cut(s) 134, 242, 244
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 195, 317, 396
AfaI GTAC 2 cut(s) 118, 143
AfiI CCNNNNNNNGG 1 cut(s) 640
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 1 cut(s) 752
AluBI AGCT 3 cut(s) 191, 474, 544
AluI AGCT 3 cut(s) 191, 474, 544
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 125, 269
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 3 cut(s) 195, 317, 396
ArsI GACNNNNNNTTYG 4 cut(s) 16, 48, 509, 541
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 3 cut(s) 134, 580, 700
AspS9I GGNCC 1 cut(s) 415
AsuHPI GGTGA 5 cut(s) 26, 229, 244, 315, 456
AsuII TTCGAA 2 cut(s) 162, 201
AvaI CYCGRG 2 cut(s) 125, 269
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 576
BauI CACGAG 1 cut(s) 38
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 406, 717
BceAI ACGGC 3 cut(s) 109, 277, 635
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 692
BfoI RGCGCY 1 cut(s) 701
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 2 cut(s) 239, 242
BlsI GCNGC 2 cut(s) 240, 243
Bme1390I CCNGG 1 cut(s) 366
BmeT110I CYCGRG 2 cut(s) 125, 269
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 6, 615
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 470
Bpu14I TTCGAA 2 cut(s) 162, 201
Bsa29I ATCGAT 2 cut(s) 156, 295
BsaJI CCNNGG 2 cut(s) 126, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 2 cut(s) 156, 295
BseDI CCNNGG 2 cut(s) 126, 242
BseGI GGATG 2 cut(s) 544, 630
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 5 cut(s) 349, 461, 613, 649, 718
BseNI ACTGG 1 cut(s) 617
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 2 cut(s) 413, 716
Bsh1236I CGCG 3 cut(s) 134, 244, 578
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 613
BshVI ATCGAT 2 cut(s) 156, 295
BsiEI CGRYCG 1 cut(s) 138
BsiHKCI CYCGRG 2 cut(s) 125, 269
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 450
BsnI GGCC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 125, 269
Bsp119I TTCGAA 2 cut(s) 162, 201
Bsp1286I GDGCHC 1 cut(s) 576
Bsp143I GATC 3 cut(s) 4, 226, 292
BspACI CCGC 3 cut(s) 134, 242, 244
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 5 cut(s) 348, 462, 612, 648, 717
BspDI ATCGAT 2 cut(s) 156, 295
BspFNI CGCG 3 cut(s) 134, 244, 578
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 6, 615
BspMAI CTGCAG 1 cut(s) 696
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 162, 201
BspT107I GGYRCC 1 cut(s) 613
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 1 cut(s) 617
BssECI CCNNGG 2 cut(s) 126, 242
BssMI GATC 3 cut(s) 4, 226, 292
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 366
BstBI TTCGAA 2 cut(s) 162, 201
BstC8I GCNNGC 3 cut(s) 576, 696, 717
BstDEI CTNAG 5 cut(s) 335, 470, 599, 635, 704
BstDSI CCRYGG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 638
BstF5I GGATG 2 cut(s) 544, 630
BstFNI CGCG 3 cut(s) 134, 244, 578
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 3 cut(s) 134, 580, 700
BstKTI GATC 3 cut(s) 7, 229, 295
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 3 cut(s) 4, 226, 292
BstMCI CGRYCG 1 cut(s) 138
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 692
BstUI CGCG 3 cut(s) 134, 244, 578
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 2 cut(s) 156, 295
BsuRI GGCC 1 cut(s) 417
BsuTUI ATCGAT 2 cut(s) 156, 295
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 544, 630
BtsIMutI CAGTG 2 cut(s) 343, 624
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 3 cut(s) 576, 696, 717
CciI TCATGA 1 cut(s) 223
CfoI GCGC 3 cut(s) 134, 580, 700
Cfr13I GGNCC 1 cut(s) 415
Cfr42I CCGCGG 1 cut(s) 245
ClaI ATCGAT 2 cut(s) 156, 295
Csp6I GTAC 2 cut(s) 117, 142
CviAII CATG 5 cut(s) 185, 224, 552, 716, 772
CviQI GTAC 2 cut(s) 117, 142
DdeI CTNAG 5 cut(s) 335, 470, 599, 635, 704
DpnI GATC 3 cut(s) 6, 228, 294
DpnII GATC 3 cut(s) 4, 226, 292
Eco24I GRGCYC 1 cut(s) 576
Eco88I CYCGRG 2 cut(s) 125, 269
EcoNI CCTNNNNNAGG 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 576
FaeI CATG 5 cut(s) 188, 227, 555, 719, 775
FaiI YATR 9 cut(s) 186, 225, 236, 291, 477, 553, 717, 764, 773
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 515, 547
FatI CATG 5 cut(s) 184, 223, 551, 715, 771
Fnu4HI GCNGC 2 cut(s) 239, 242
FokI GGATG 2 cut(s) 551, 617
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 2 cut(s) 239, 242
GlaI GCGC 3 cut(s) 133, 579, 699
GluI GCNGC 2 cut(s) 239, 242
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 1 cut(s) 417
HhaI GCGC 3 cut(s) 134, 580, 700
Hin1II CATG 5 cut(s) 188, 227, 555, 719, 775
Hin6I GCGC 3 cut(s) 132, 578, 698
HinP1I GCGC 3 cut(s) 132, 578, 698
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 4 cut(s) 53, 59, 220, 518
HphI GGTGA 5 cut(s) 26, 229, 244, 315, 456
Hpy166II GTNNAC 3 cut(s) 142, 171, 341
Hpy188I TCNGA 2 cut(s) 58, 351
Hpy188III TCNNGA 3 cut(s) 224, 271, 401
Hpy8I GTNNAC 3 cut(s) 142, 171, 341
Hpy99I CGWCG 2 cut(s) 263, 656
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 7 cut(s) 238, 430, 671, 694, 715, 719, 733
HpyF3I CTNAG 5 cut(s) 335, 470, 599, 635, 704
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 5 cut(s) 188, 227, 555, 719, 775
HspAI GCGC 3 cut(s) 132, 578, 698
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 3 cut(s) 4, 226, 292
LmnI GCTCC 2 cut(s) 207, 585
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 658
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 32
MalI GATC 3 cut(s) 6, 228, 294
MboI GATC 3 cut(s) 4, 226, 292
MboII GAAGA 2 cut(s) 97, 580
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 9 cut(s) 24, 75, 195, 304, 317, 396, 460, 495, 501
MlyI GAGTC 2 cut(s) 229, 512
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 6 cut(s) 82, 121, 186, 604, 638, 644
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 4 cut(s) 78, 459, 498, 507
MslI CAYNNNNRTG 3 cut(s) 435, 714, 772
MspA1I CMGCKG 1 cut(s) 244
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 3 cut(s) 134, 244, 578
NdeII GATC 3 cut(s) 4, 226, 292
NlaIII CATG 5 cut(s) 188, 227, 555, 719, 775
NlaIV GGNNCC 2 cut(s) 6, 615
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 2 cut(s) 162, 201
PaeI GCATGC 1 cut(s) 719
PagI TCATGA 1 cut(s) 223
PaqCI CACCTGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 53, 59
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 2 cut(s) 240, 243
PleI GAGTC 2 cut(s) 228, 512
PpsI GAGTC 2 cut(s) 228, 512
PshBI ATTAAT 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 6, 615
PspPI GGNCC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 696
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 118, 143
RsaNI GTAC 2 cut(s) 117, 142
RseI CAYNNNNRTG 3 cut(s) 435, 714, 772
SacII CCGCGG 1 cut(s) 245
SaqAI TTAA 4 cut(s) 78, 459, 498, 507
SatI GCNGC 2 cut(s) 239, 242
Sau3AI GATC 3 cut(s) 4, 226, 292
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 2 cut(s) 229, 512
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 576
SetI ASST 8 cut(s) 20, 147, 193, 219, 429, 476, 546, 756
SfaNI GCATC 1 cut(s) 658
SfcI CTRYAG 1 cut(s) 692
Sfr303I CCGCGG 1 cut(s) 245
SfuI TTCGAA 2 cut(s) 162, 201
SgrBI CCGCGG 1 cut(s) 245
SmiMI CAYNNNNRTG 3 cut(s) 435, 714, 772
SphI GCATGC 1 cut(s) 719
Sse9I AATT 9 cut(s) 24, 75, 195, 304, 317, 396, 460, 495, 501
SsiI CCGC 3 cut(s) 134, 242, 244
StyD4I CCNGG 1 cut(s) 364
TaiI ACGT 1 cut(s) 147
TaqI TCGA 6 cut(s) 156, 162, 201, 229, 295, 528
TasI AATT 9 cut(s) 24, 75, 195, 304, 317, 396, 460, 495, 501
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 2 cut(s) 53, 59
Tru1I TTAA 4 cut(s) 78, 459, 498, 507
Tru9I TTAA 4 cut(s) 78, 459, 498, 507
TscAI CASTG 2 cut(s) 343, 624
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 760
TspRI CASTG 2 cut(s) 343, 624
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 638
XapI RAATTY 3 cut(s) 195, 317, 396
XceI RCATGY 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.