Rorug06G0094900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0020640
Physical Location & Seq
Forward (+)
12708216 .. 12710140
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0094900.1

Sequence Viewer

Length: 495 bp
ATGATCTATGGATACAAGATCCACTATCACCTTAGAGATGCTTGTGACACCGCCTACACCAATGGCTCGAGGGTGAGCCGATCTACAAAACCCATATGGTCGGGTCACTTCTTGGAAGGTTCCTTACCTCCATTCATCCCACGCGCCACCATTATCAGGATCCTATTGTCTCGATGTCTTTCTCCATGCCTTCACAACGAACCGCAGTTTGAAGCCACTGCGTCAAAAGTTTTATGTCTCATAGTTGAAGAGTTTACAATTCAACTCTCACTGAAAGAGTGTTCATTCTGGTTGAAGGCTGTAGAATGTGTACAAAATGCTTCTGATGGTACCTTGATGCGTTCTTTGACGGGTCACAATGAATCTGTACCAATTCACTTCTCATTTGCTTTGAAGGGTTGCACTTGCAGACTTAAAAAGCTGGACTTCAAAAGTTGGACAGAGCTAAAGACCAAAGAGGATCACCACAAAGCGGAAAGTGCTAGTACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.58

Weight (kDa)

8.63

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020640)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013336
rosa_roxburghii Rroxscaffold_7G00193090
rosa_rugosa Rorug06G0094900
rosa_samantha Rh6AG207200
rosa_wichuraiana Rw6G017970 Rw6G017990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 51, 203, 473
AclWI GGATC 4 cut(s) 13, 154, 167, 468
AfaI GTAC 4 cut(s) 312, 331, 369, 487
AfiI CCNNNNNNNGG 2 cut(s) 156, 472
AgsI TTSAA 6 cut(s) 212, 248, 263, 295, 394, 430
AluBI AGCT 2 cut(s) 421, 445
AluI AGCT 2 cut(s) 421, 445
Alw26I GTCTC 2 cut(s) 174, 242
AlwI GGATC 4 cut(s) 13, 154, 167, 468
Ama87I CYCGRG 1 cut(s) 67
Asp718I GGTACC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 20, 85, 455
AvaI CYCGRG 1 cut(s) 67
BamHI GGATCC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 329
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BccI CCATC 1 cut(s) 320
BciVI GTATCC 1 cut(s) 5
BcoDI GTCTC 2 cut(s) 174, 242
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 5
BmcAI AGTACT 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 121, 161, 331
BmsI GCATC 2 cut(s) 28, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 472
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 156, 472
Bsh1236I CGCG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 156, 472
BsmAI GTCTC 2 cut(s) 174, 242
BsoBI CYCGRG 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 5 cut(s) 3, 18, 80, 159, 460
BspACI CCGC 3 cut(s) 51, 203, 473
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 121, 161, 331
BspPI GGATC 4 cut(s) 13, 154, 167, 468
BspT107I GGYRCC 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 310
BssMI GATC 5 cut(s) 3, 18, 80, 159, 460
Bst6I CTCTTC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 5 cut(s) 6, 21, 83, 162, 463
BstMAI GTCTC 2 cut(s) 174, 242
BstMBI GATC 5 cut(s) 3, 18, 80, 159, 460
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 18, 159
BstYI RGATCY 2 cut(s) 18, 159
BsuI GTATCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 216, 269
CfoI GCGC 1 cut(s) 146
CseI GACGC 1 cut(s) 210
Csp6I GTAC 4 cut(s) 311, 330, 368, 486
CviAII CATG 1 cut(s) 186
CviJI RGCY 6 cut(s) 66, 78, 215, 299, 421, 445
CviKI_1 RGCY 6 cut(s) 66, 78, 215, 299, 421, 445
CviQI GTAC 4 cut(s) 311, 330, 368, 486
DdeI CTNAG 1 cut(s) 32
DpnI GATC 5 cut(s) 5, 20, 82, 161, 462
DpnII GATC 5 cut(s) 3, 18, 80, 159, 460
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 67
FaeI CATG 1 cut(s) 189
FaiI YATR 7 cut(s) 9, 95, 97, 187, 235, 242, 493
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 1 cut(s) 185
FauNDI CATATG 1 cut(s) 95
FokI GGATG 1 cut(s) 122
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 145
HgaI GACGC 1 cut(s) 210
HhaI GCGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 189
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 1 cut(s) 362
HphI GGTGA 3 cut(s) 20, 85, 455
Hpy166II GTNNAC 2 cut(s) 255, 311
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 157, 171
Hpy8I GTNNAC 2 cut(s) 255, 311
HpyAV CCTTC 4 cut(s) 110, 200, 289, 388
HpyCH4V TGCA 2 cut(s) 402, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 1 cut(s) 189
HspAI GCGC 1 cut(s) 144
KpnI GGTACC 1 cut(s) 333
Kzo9I GATC 5 cut(s) 3, 18, 80, 159, 460
LpnPI CCDG 3 cut(s) 142, 274, 407
LweI GCATC 2 cut(s) 28, 327
MaeI CTAG 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 44, 104, 353
MalI GATC 5 cut(s) 5, 20, 82, 161, 462
MboI GATC 5 cut(s) 3, 18, 80, 159, 460
MboII GAAGA 1 cut(s) 260
MflI RGATCY 2 cut(s) 18, 159
MluCI AATT 2 cut(s) 258, 372
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 3 cut(s) 63, 138, 451
MseI TTAA 1 cut(s) 414
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeI CATATG 1 cut(s) 95
NdeII GATC 5 cut(s) 3, 18, 80, 159, 460
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 3 cut(s) 121, 161, 331
NmuCI GTSAC 3 cut(s) 44, 104, 353
PaeR7I CTCGAG 1 cut(s) 67
PfeI GAWTC 1 cut(s) 362
PspN4I GGNNCC 3 cut(s) 121, 161, 331
PspXI VCTCGAGB 1 cut(s) 67
PsuI RGATCY 2 cut(s) 18, 159
RsaI GTAC 4 cut(s) 312, 331, 369, 487
RsaNI GTAC 4 cut(s) 311, 330, 368, 486
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 5 cut(s) 3, 18, 80, 159, 460
ScaI AGTACT 1 cut(s) 487
SetI ASST 6 cut(s) 33, 121, 130, 335, 423, 447
SfaNI GCATC 2 cut(s) 28, 327
SfcI CTRYAG 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 258, 372
SsiI CCGC 3 cut(s) 51, 203, 473
SspMI CTAG 1 cut(s) 483
TaqI TCGA 2 cut(s) 68, 172
TasI AATT 2 cut(s) 258, 372
TatI WGTACW 2 cut(s) 310, 485
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 223, 276
TseFI GTSAC 3 cut(s) 44, 104, 353
Tsp45I GTSAC 3 cut(s) 44, 104, 353
TspDTI ATGAA 3 cut(s) 124, 273, 375
TspRI CASTG 2 cut(s) 223, 276
XhoI CTCGAG 1 cut(s) 67
XspI CTAG 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.