Rw6G017990

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0020640
Physical Location & Seq
Reverse (-)
35658560 .. 35660410
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017990.1

Sequence Viewer

Length: 1347 bp
ATGGATCCTAACGTTACCTATCAAATTGATAGTCACCACGAGTTCCCCTACGATTCTGATTCTGGGCAATCCTCAATTAAGTATTATCATCACGGCAAGTTGTTCTTCAATGGTGGTACTGCCCCCGAGGGCGCGGTCTTGGACGTTTCCTTTATCGATTTCGAAAAGTCAACCCCTCTTGGTCTTGTAGCTCAAATTTTCGAAAGGAGCAGGAAGGTGAGTCATGATCGAGTTATGCAGCCGCGGTTTTTCACCCACGACGGCAATCTCGGGAAGGACATTTTGTGCTATGATCGATTTACCAATTTTTTACCAGAATTCTCACCCATTTGGCTCAGTGAACCACTTCTGGAAAGTGATATTCCTGGACTGCCAAATCCAACACTAAAGCGAGAAATTCGGGAGTTAGCGATGGGCCTAAAACACCTGCACGATAATGATGTGTCTCATTCTGCCCTTAATTCACCCCTGAGCTATGTGTGGTCAAATGGCAAAATTAAAATTATTAATGTTGATGACTCAAAGTTCGACTTTTGGGATGAGCTTGACCCATGCGAGAAGCAATGGCAAGGGCGTCAGCGACACCATATCAACCAGTTTGGCATTGGACTCAAATACCTCCTGAGATCAGAGAAGTTTTGGCCCGAAAGGGATTCTTTTCTGAGGTGCTTTCACCGGAGTGTCAGCCTTGACAGGTACTTAAAGATGGTGTACACTCACCCCTTTTTGATGGAACACGTGAAGGAGATATTGCAACTGCTTGCAGATGCACACCATGCCTATATTTCTAAACATAGTGGTAGGCTTAGATTCGATCTTTTAGAGGGGGCATTTAAAAAAAAAGTTATGGATCGTGAGTACCTAAGACCTAAAGTTGGTTGGCGCAGGGAGATGGGCACTAAATTTACTAAAATAATCCAGTATGTTCGCACCTCTCCTCCTCCCCAATCCAATGGTTCTCCCGGATCTAGAAGCACCGGTGGTGGTTCTCCTCATCCTTATTTTCGCGATCGCGCTTCTCTTCCTCCTACTTCTCAGTCAGCCACAGGCACCAGTGGTTCTCCTCATCCTCAGTCAGGCAGTCGCCATCCTCAGTCAGCCAAAGGCAGTATTGGTTATCACTCATCTGCAGGCACTTCTCAGCCATCTGCATGGACTTCTGCTACTGCACCAACTACCACCACCCCACCTGACCAATATAACATTCATGAGATGTCTGAGCTTCTCAGATTTCTCAGAAATGTGTTTGAGCATTATTATGAGGAACATATGTCATTATTAGACTTTTATAAGGAAGTCAGAGAGCATTGGCCACATTTTGTTGATAGGATTCATGAAAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8

Protein Analysis

448

Amino Acids

51.7

Weight (kDa)

7.85

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020640)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013336
rosa_roxburghii Rroxscaffold_7G00193090
rosa_rugosa Rorug06G0094900
rosa_samantha Rh6AG207200
rosa_wichuraiana Rw6G017970 Rw6G017990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1290
AarI CACCTGC 1 cut(s) 435
Acc36I ACCTGC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 1049
AccII CGCG 4 cut(s) 134, 244, 1008, 1014
AciI CCGC 3 cut(s) 134, 242, 244
AclI AACGTT 1 cut(s) 12
AclWI GGATC 3 cut(s) 12, 858, 973
AcoI YGGCCR 1 cut(s) 1310
AcsI RAATTY 4 cut(s) 195, 317, 396, 902
AcvI CACGTG 1 cut(s) 739
AcyI GRCGYC 1 cut(s) 574
AfaI GTAC 4 cut(s) 118, 698, 713, 860
AfiI CCNNNNNNNGG 2 cut(s) 875, 1076
AflIII ACRYGT 1 cut(s) 736
AgeI ACCGGT 1 cut(s) 977
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 1188, 1220
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 4 cut(s) 191, 474, 544, 1222
AluI AGCT 4 cut(s) 191, 474, 544, 1222
Alw26I GTCTC 1 cut(s) 450
AlwI GGATC 3 cut(s) 12, 858, 973
Ama87I CYCGRG 2 cut(s) 125, 269
AoxI GGCC 3 cut(s) 415, 641, 1310
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 4 cut(s) 195, 317, 396, 902
ArsI GACNNNNNNTTYG 4 cut(s) 16, 48, 509, 541
AseI ATTAAT 1 cut(s) 507
AsiGI ACCGGT 1 cut(s) 977
AsiSI GCGATCGC 1 cut(s) 1012
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 3 cut(s) 134, 885, 1016
AspS9I GGNCC 2 cut(s) 415, 642
AsuC2I CCSGG 1 cut(s) 963
AsuHPI GGTGA 7 cut(s) 26, 229, 244, 315, 456, 665, 710
AsuII TTCGAA 2 cut(s) 162, 201
AvaI CYCGRG 2 cut(s) 125, 269
BaeGI GKGCMC 1 cut(s) 899
BalI TGGCCA 1 cut(s) 1312
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 1049
BauI CACGAG 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 739
BbvI GCAGC 1 cut(s) 250
BccI CCATC 6 cut(s) 406, 700, 724, 886, 1095, 1153
BceAI ACGGC 2 cut(s) 109, 277
BciT130I CCWGG 1 cut(s) 366
BcnI CCSGG 1 cut(s) 963
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 969
BfmI CTRYAG 1 cut(s) 1128
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 2 cut(s) 239, 242
BlsI GCNGC 2 cut(s) 240, 243
Bme1390I CCNGG 2 cut(s) 366, 963
BmeT110I CYCGRG 2 cut(s) 125, 269
BmgT120I GGNCC 2 cut(s) 415, 642
BmiI GGNNCC 2 cut(s) 6, 1051
BmrFI CCNGG 2 cut(s) 366, 963
BmsI GCATC 1 cut(s) 757
Bpu10I CCTNAGC 1 cut(s) 470
Bpu14I TTCGAA 2 cut(s) 162, 201
BpuMI CCSGG 1 cut(s) 963
Bsa29I ATCGAT 2 cut(s) 156, 295
BsaAI YACGTR 1 cut(s) 739
BsaHI GRCGYC 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 126, 242
BsaWI WCCGGW 2 cut(s) 675, 977
BsaXI ACNNNNNCTCC 2 cut(s) 922, 952
Bsc4I CCNNNNNNNGG 2 cut(s) 875, 1076
Bse118I RCCGGY 1 cut(s) 977
Bse1I ACTGG 3 cut(s) 595, 919, 1053
Bse3DI GCAATG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 366
BseCI ATCGAT 2 cut(s) 156, 295
BseDI CCNNGG 2 cut(s) 126, 242
BseGI GGATG 4 cut(s) 544, 994, 1066, 1087
BseLI CCNNNNNNNGG 2 cut(s) 875, 1076
BseMI GCAATG 1 cut(s) 569
BseNI ACTGG 3 cut(s) 595, 919, 1053
BseRI GAGGAG 4 cut(s) 927, 930, 981, 1053
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 2 cut(s) 413, 1152
Bsh1236I CGCG 4 cut(s) 134, 244, 1008, 1014
Bsh1285I CGRYCG 1 cut(s) 1012
BshFI GGCC 3 cut(s) 417, 643, 1312
BshNI GGYRCC 1 cut(s) 1049
BshTI ACCGGT 1 cut(s) 977
BshVI ATCGAT 2 cut(s) 156, 295
BsiEI CGRYCG 1 cut(s) 1012
BsiHKCI CYCGRG 2 cut(s) 125, 269
BsiSI CCGG 3 cut(s) 676, 963, 978
BslI CCNNNNNNNGG 2 cut(s) 875, 1076
BsmAI GTCTC 1 cut(s) 450
BsnI GGCC 3 cut(s) 417, 643, 1312
BsoBI CYCGRG 2 cut(s) 125, 269
Bsp119I TTCGAA 2 cut(s) 162, 201
Bsp1286I GDGCHC 1 cut(s) 899
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
Bsp68I TCGCGA 1 cut(s) 1008
BspACI CCGC 3 cut(s) 134, 242, 244
BspANI GGCC 3 cut(s) 417, 643, 1312
BspDI ATCGAT 2 cut(s) 156, 295
BspFNI CGCG 4 cut(s) 134, 244, 1008, 1014
BspHI TCATGA 3 cut(s) 223, 1207, 1333
BspLI GGNNCC 2 cut(s) 6, 1051
BspMAI CTGCAG 1 cut(s) 1132
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 3 cut(s) 12, 858, 973
BspT104I TTCGAA 2 cut(s) 162, 201
BspT107I GGYRCC 1 cut(s) 1049
BsrDI GCAATG 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 977
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 3 cut(s) 595, 919, 1053
BssAI RCCGGY 1 cut(s) 977
BssECI CCNNGG 2 cut(s) 126, 242
BssMI GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
BssNI GRCGYC 1 cut(s) 574
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 1026
BstACI GRCGYC 1 cut(s) 574
BstAPI GCANNNNNTGC 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 711
BstBAI YACGTR 1 cut(s) 739
BstBI TTCGAA 2 cut(s) 162, 201
BstC8I GCNNGC 2 cut(s) 762, 1132
BstDSI CCRYGG 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 1074
BstF5I GGATG 4 cut(s) 544, 994, 1066, 1087
BstFNI CGCG 4 cut(s) 134, 244, 1008, 1014
BstHHI GCGC 3 cut(s) 134, 885, 1016
BstKTI GATC 8 cut(s) 7, 229, 295, 629, 817, 853, 968, 1012
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
BstMCI CGRYCG 1 cut(s) 1012
BstMWI GCNNNNNNNGC 1 cut(s) 776
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 2 cut(s) 364, 961
BstSFI CTRYAG 1 cut(s) 1128
BstSLI GKGCMC 1 cut(s) 899
BstUI CGCG 4 cut(s) 134, 244, 1008, 1014
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 4, 965
BstXI CCANNNNNNTGG 2 cut(s) 953, 1152
BstYI RGATCY 2 cut(s) 4, 965
Bsu15I ATCGAT 2 cut(s) 156, 295
BsuRI GGCC 3 cut(s) 417, 643, 1312
BsuTUI ATCGAT 2 cut(s) 156, 295
BtgI CCRYGG 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 4 cut(s) 544, 994, 1066, 1087
BtsIMutI CAGTG 2 cut(s) 343, 1060
BtuMI TCGCGA 1 cut(s) 1008
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 762, 1132
CciI TCATGA 3 cut(s) 223, 1207, 1333
CfoI GCGC 3 cut(s) 134, 885, 1016
Cfr10I RCCGGY 1 cut(s) 977
Cfr13I GGNCC 2 cut(s) 415, 642
Cfr42I CCGCGG 1 cut(s) 245
ClaI ATCGAT 2 cut(s) 156, 295
CseI GACGC 1 cut(s) 563
Csp6I GTAC 4 cut(s) 117, 697, 712, 859
CspAI ACCGGT 1 cut(s) 977
CviAII CATG 6 cut(s) 224, 552, 776, 1152, 1208, 1334
CviQI GTAC 4 cut(s) 117, 697, 712, 859
DpnI GATC 8 cut(s) 6, 228, 294, 628, 816, 852, 967, 1011
DpnII GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
DraI TTTAAA 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 1310
Eam1104I CTCTTC 1 cut(s) 1026
EarI CTCTTC 1 cut(s) 1026
Eco72I CACGTG 1 cut(s) 739
Eco88I CYCGRG 2 cut(s) 125, 269
EcoNI CCTNNNNNAGG 1 cut(s) 1074
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 6 cut(s) 227, 555, 779, 1155, 1211, 1337
FalI AAGNNNNNCTT 6 cut(s) 89, 121, 515, 547, 640, 672
FatI CATG 6 cut(s) 223, 551, 775, 1151, 1207, 1333
FauNDI CATATG 1 cut(s) 1269
Fnu4HI GCNGC 2 cut(s) 239, 242
FokI GGATG 4 cut(s) 551, 981, 1053, 1074
Fsp4HI GCNGC 2 cut(s) 239, 242
FspBI CTAG 1 cut(s) 969
GlaI GCGC 3 cut(s) 133, 884, 1015
GluI GCNGC 2 cut(s) 239, 242
HaeIII GGCC 3 cut(s) 417, 643, 1312
HapII CCGG 3 cut(s) 676, 963, 978
HgaI GACGC 1 cut(s) 563
HhaI GCGC 3 cut(s) 134, 885, 1016
Hin1I GRCGYC 1 cut(s) 574
Hin1II CATG 6 cut(s) 227, 555, 779, 1155, 1211, 1337
Hin6I GCGC 3 cut(s) 132, 883, 1014
HinP1I GCGC 3 cut(s) 132, 883, 1014
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 8 cut(s) 53, 59, 220, 518, 609, 653, 810, 1330
HpaII CCGG 3 cut(s) 676, 963, 978
HphI GGTGA 7 cut(s) 26, 229, 244, 315, 456, 665, 710
Hpy166II GTNNAC 4 cut(s) 171, 341, 712, 714
Hpy188I TCNGA 7 cut(s) 58, 631, 663, 1219, 1229, 1238, 1301
Hpy8I GTNNAC 4 cut(s) 171, 341, 712, 714
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 208, 268, 736
HpyCH4IV ACGT 3 cut(s) 12, 144, 738
HpyCH4V TGCA 8 cut(s) 238, 430, 754, 764, 770, 1130, 1151, 1169
HpyF10VI GCNNNNNNNGC 1 cut(s) 776
HpySE526I ACGT 3 cut(s) 12, 144, 738
Hsp92I GRCGYC 1 cut(s) 574
Hsp92II CATG 6 cut(s) 227, 555, 779, 1155, 1211, 1337
HspAI GCGC 3 cut(s) 132, 883, 1014
KspI CCGCGG 1 cut(s) 245
Kzo9I GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 757
MaeI CTAG 1 cut(s) 969
MaeII ACGT 3 cut(s) 12, 144, 738
MaeIII GTNAC 2 cut(s) 13, 32
MalI GATC 8 cut(s) 6, 228, 294, 628, 816, 852, 967, 1011
MboI GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
MboII GAAGA 2 cut(s) 97, 1013
MflI RGATCY 2 cut(s) 4, 965
MhlI GDGCHC 1 cut(s) 899
MlsI TGGCCA 1 cut(s) 1312
MluNI TGGCCA 1 cut(s) 1312
MlyI GAGTC 3 cut(s) 229, 512, 603
MmeI TCCRAC 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 1312
MroXI GAANNNNTTC 1 cut(s) 345
MscI TGGCCA 1 cut(s) 1312
MseI TTAA 6 cut(s) 78, 459, 498, 507, 701, 834
MslI CAYNNNNRTG 4 cut(s) 435, 678, 1150, 1257
Msp20I TGGCCA 1 cut(s) 1312
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 3 cut(s) 676, 963, 978
MspR9I CCNGG 2 cut(s) 366, 963
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 4 cut(s) 134, 244, 1008, 1014
MwoI GCNNNNNNNGC 1 cut(s) 776
NciI CCSGG 1 cut(s) 963
NdeI CATATG 1 cut(s) 1269
NdeII GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
NlaIII CATG 6 cut(s) 227, 555, 779, 1155, 1211, 1337
NlaIV GGNNCC 2 cut(s) 6, 1051
NmuCI GTSAC 1 cut(s) 32
NruI TCGCGA 1 cut(s) 1008
NspV TTCGAA 2 cut(s) 162, 201
OliI CACNNNNGTG 1 cut(s) 678
PagI TCATGA 3 cut(s) 223, 1207, 1333
PaqCI CACCTGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 5 cut(s) 53, 59, 653, 810, 1330
PfoI TCCNGGA 2 cut(s) 364, 961
PinAI ACCGGT 1 cut(s) 977
PkrI GCNGC 2 cut(s) 240, 243
Ple19I CGATCG 1 cut(s) 1012
PleI GAGTC 3 cut(s) 228, 512, 603
PmaCI CACGTG 1 cut(s) 739
PmlI CACGTG 1 cut(s) 739
PpsI GAGTC 3 cut(s) 228, 512, 603
Ppu21I YACGTR 1 cut(s) 739
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 1290
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 364
PspCI CACGTG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 6, 1051
PspPI GGNCC 2 cut(s) 415, 642
PstI CTGCAG 1 cut(s) 1132
PsuI RGATCY 2 cut(s) 4, 965
PvuI CGATCG 1 cut(s) 1012
RgaI GCGATCGC 1 cut(s) 1012
RruI TCGCGA 1 cut(s) 1008
RsaI GTAC 4 cut(s) 118, 698, 713, 860
RsaNI GTAC 4 cut(s) 117, 697, 712, 859
RseI CAYNNNNRTG 4 cut(s) 435, 678, 1150, 1257
SacII CCGCGG 1 cut(s) 245
SaqAI TTAA 6 cut(s) 78, 459, 498, 507, 701, 834
SatI GCNGC 2 cut(s) 239, 242
Sau3AI GATC 8 cut(s) 4, 226, 292, 626, 814, 850, 965, 1009
Sau96I GGNCC 2 cut(s) 415, 642
SchI GAGTC 3 cut(s) 229, 512, 603
ScrFI CCNGG 2 cut(s) 366, 963
SduI GDGCHC 1 cut(s) 899
SfaAI GCGATCGC 1 cut(s) 1012
SfaNI GCATC 1 cut(s) 757
SfcI CTRYAG 1 cut(s) 1128
Sfr303I CCGCGG 1 cut(s) 245
SfuI TTCGAA 2 cut(s) 162, 201
SgfI GCGATCGC 1 cut(s) 1012
SgrAI CRCCGGYG 1 cut(s) 977
SgrBI CCGCGG 1 cut(s) 245
SmiMI CAYNNNNRTG 4 cut(s) 435, 678, 1150, 1257
SsiI CCGC 3 cut(s) 134, 242, 244
SspMI CTAG 1 cut(s) 969
StyD4I CCNGG 2 cut(s) 364, 961
TaiI ACGT 3 cut(s) 15, 147, 741
TaqI TCGA 7 cut(s) 156, 162, 201, 229, 295, 528, 813
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 244
TfiI GAWTC 5 cut(s) 53, 59, 653, 810, 1330
Tru1I TTAA 6 cut(s) 78, 459, 498, 507, 701, 834
Tru9I TTAA 6 cut(s) 78, 459, 498, 507, 701, 834
TscAI CASTG 2 cut(s) 343, 1060
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 1196, 1322
TspRI CASTG 2 cut(s) 343, 1060
VspI ATTAAT 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 1074
XapI RAATTY 4 cut(s) 195, 317, 396, 902
XbaI TCTAGA 1 cut(s) 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.