Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018682

Physical Location & Seq

Genomic Coordinates Forward (+)

37277925 .. 37279579

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGCACAGAGGAGGTATATTTATCCTTCTAGATTTCTTGCCTCTAATAGTGATCGGAGGAATCCTATTTCCGCCTAAAAGAGTGATATCCGCTGGGGCTCCATACATCGCTGGCCACATTATCCATATACACCACCGTTCCCACAATCCCCTCCCCTTCGAACCCATCGTCGCGTACACCGAGTGGCACCTCAAGGACAGCGCGCAAATGGGAGAATTTGCACTTGGATCGAGACACGCCGAGTTCCAACATGAGTGGAAGGATTTCATGGAGACGTTCAACGTCACCAAATGGTCGTTGGTCTTGTTGGTCCCCAAGATTGATGTCGACCCCGTCGATGGCTTTATCGGCGAGCACGAGTTGACTCGGTGGATCTTGGTAGGGAAACAACCAAATCAGCCCAACGCAAGCATAGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

141

Amino Acids

16.04

Weight (kDa)

6.17

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018682)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001428.1_g000025
rosa_roxburghii	Rroxscaffold_7G00177460 Rroxscaffold_7G00195080
rosa_samantha	Rh1BG146300 Rh1DG178300 Rh2AG286200 Rh2DG311700 Rh5CG235500 Rh6CG222600 Rh6DG040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	2 cut(s)	176, 206
AciI	CCGC	2 cut(s)	74, 93
AclWI	GGATC	2 cut(s)	238, 383
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
Alw21I	GWGCWC	2 cut(s)	9, 360
Alw26I	GTCTC	2 cut(s)	229, 269
AlwI	GGATC	2 cut(s)	238, 383
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	206, 208
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	359
Bbv12I	GWGCWC	2 cut(s)	9, 360
BccI	CCATC	2 cut(s)	176, 335
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BcoDI	GTCTC	2 cut(s)	229, 269
BfaI	CTAG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	102, 191, 315
Bpu14I	TTCGAA	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	341
BsePI	GCGCGC	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	176, 206
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	9, 360
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	2 cut(s)	229, 269
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	162
Bsp1286I	GDGCHC	3 cut(s)	9, 103, 360
Bsp143I	GATC	3 cut(s)	54, 230, 375
BspACI	CCGC	2 cut(s)	74, 93
BspANI	GGCC	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	176, 206
BspLI	GGNNCC	3 cut(s)	102, 191, 315
BspPI	GGATC	2 cut(s)	238, 383
BspT104I	TTCGAA	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	189
BssHII	GCGCGC	1 cut(s)	204
BssMI	GATC	3 cut(s)	54, 230, 375
BssSI	CACGAG	1 cut(s)	359
Bst2BI	CACGAG	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	162
BstC8I	GCNNGC	4 cut(s)	115, 206, 356, 412
BstFNI	CGCG	2 cut(s)	176, 206
BstHHI	GCGC	2 cut(s)	206, 208
BstKTI	GATC	3 cut(s)	57, 233, 378
BstMAI	GTCTC	2 cut(s)	229, 269
BstMBI	GATC	3 cut(s)	54, 230, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 416
BstUI	CGCG	2 cut(s)	176, 206
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	94
Cac8I	GCNNGC	4 cut(s)	115, 206, 356, 412
CfoI	GCGC	2 cut(s)	206, 208
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	239, 274
CviAII	CATG	2 cut(s)	254, 271
CviJI	RGCY	4 cut(s)	101, 117, 345, 403
CviKI_1	RGCY	4 cut(s)	101, 117, 345, 403
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	3 cut(s)	56, 232, 377
DpnII	GATC	3 cut(s)	54, 230, 375
DraIII	CACNNNGTG	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	2 cut(s)	257, 274
FaiI	YATR	8 cut(s)	20, 106, 129, 131, 255, 272, 416, 421
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	253, 270
FblI	GTMKAC	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	205, 207
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	206, 208
Hin1II	CATG	2 cut(s)	257, 274
Hin6I	GCGC	2 cut(s)	204, 206
HinP1I	GCGC	2 cut(s)	204, 206
HincII	GTYRAC	2 cut(s)	331, 366
HindII	GTYRAC	2 cut(s)	331, 366
HinfI	GANTC	2 cut(s)	63, 367
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	3 cut(s)	180, 331, 366
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	2 cut(s)	32, 234
Hpy8I	GTNNAC	3 cut(s)	180, 331, 366
Hpy99I	CGWCG	2 cut(s)	176, 341
HpyAV	CCTTC	3 cut(s)	38, 169, 256
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	2 cut(s)	278, 285
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 416
HpySE526I	ACGT	2 cut(s)	278, 285
Hsp92II	CATG	2 cut(s)	257, 274
HspAI	GCGC	2 cut(s)	204, 206
Kzo9I	GATC	3 cut(s)	54, 230, 375
LmnI	GCTCC	2 cut(s)	4, 106
LpnPI	CCDG	2 cut(s)	81, 99
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	278, 285
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	56, 232, 377
MboI	GATC	3 cut(s)	54, 230, 375
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	9, 103, 360
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	1 cut(s)	218
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	5, 8, 53, 54, 164, 203
Mox20I	TGGCCA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	95
MvnI	CGCG	2 cut(s)	176, 206
MwoI	GCNNNNNNNGC	2 cut(s)	351, 416
NdeII	GATC	3 cut(s)	54, 230, 375
NlaIII	CATG	2 cut(s)	257, 274
NlaIV	GGNNCC	3 cut(s)	102, 191, 315
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	286
NspV	TTCGAA	1 cut(s)	162
PauI	GCGCGC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	4 cut(s)	168, 180, 336, 357
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	102, 191, 315
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	335
PteI	GCGCGC	1 cut(s)	204
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	54, 230, 375
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	361
SduI	GDGCHC	3 cut(s)	9, 103, 360
SetI	ASST	4 cut(s)	19, 195, 281, 288
SfuI	TTCGAA	1 cut(s)	162
SinI	GGWCC	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	74, 93
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	2 cut(s)	281, 288
TaqI	TCGA	4 cut(s)	162, 233, 330, 339
TasI	AATT	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	218
XbaI	TCTAGA	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.