Rh6DG040000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018682
Physical Location & Seq
Reverse (-)
4316539 .. 4316835
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG040000.1

Sequence Viewer

Length: 297 bp
ATGGCCAGGGCCTCAGTATTCATATACACAACCGTTCTCACAATCCCATCCCCTTCGACCCTCTCGTTGCCGACATCGAGCGTCGCCGCAAGGACCGCAAATGGGAGAACGATCACTTGGATCGAGATTCCGCCCCCACCGCCGAGTCTCCAAGAGAAGAAGATCAAGAATTTGAGTGATTGCTCGGGAGAAGATTCAAATCAAGAAGATCGACAACGCCACGGCGAGGCAGTGATGTATTCACTTGGGTGGACGGAGGATTGTGAACTTGGGATCTCCCAGATGGATTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.79

Weight (kDa)

4.78

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 87, 96, 131, 140
AclWI GGATC 2 cut(s) 128, 281
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 102, 226
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AleI CACNNNNGTG 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 128, 281
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 2 cut(s) 3, 9
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 9, 93
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 5
BccI CCATC 2 cut(s) 55, 277
BceAI ACGGC 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 9, 93
BmrFI CCNGG 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 6, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 226
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 6, 220
BseGI GGATG 1 cut(s) 47
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 2 cut(s) 102, 226
BseMII CTCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 5, 11
BsiHKCI CYCGRG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 102, 226
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 2 cut(s) 5, 11
BsoBI CYCGRG 1 cut(s) 184
Bsp143I GATC 5 cut(s) 111, 120, 162, 208, 273
BspACI CCGC 4 cut(s) 87, 96, 131, 140
BspANI GGCC 2 cut(s) 5, 11
BspCNI CTCAG 1 cut(s) 26
BspPI GGATC 2 cut(s) 128, 281
BssECI CCNNGG 2 cut(s) 6, 220
BssMI GATC 5 cut(s) 111, 120, 162, 208, 273
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 5 cut(s) 114, 123, 165, 211, 276
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 5 cut(s) 111, 120, 162, 208, 273
BstMWI GCNNNNNNNGC 2 cut(s) 95, 139
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 2 cut(s) 5, 11
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 9, 93
CseI GACGC 1 cut(s) 70
CviJI RGCY 2 cut(s) 5, 11
CviKI_1 RGCY 2 cut(s) 5, 11
DdeI CTNAG 1 cut(s) 13
DpnI GATC 5 cut(s) 113, 122, 164, 210, 275
DpnII GATC 5 cut(s) 111, 120, 162, 208, 273
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 5
FaiI YATR 2 cut(s) 23, 25
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 5, 11
HgaI GACGC 1 cut(s) 70
HinfI GANTC 3 cut(s) 127, 145, 194
Hpy166II GTNNAC 2 cut(s) 252, 266
Hpy188I TCNGA 1 cut(s) 296
Hpy188III TCNNGA 4 cut(s) 124, 166, 186, 203
Hpy8I GTNNAC 2 cut(s) 252, 266
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 139
HpyF3I CTNAG 1 cut(s) 13
Kzo9I GATC 5 cut(s) 111, 120, 162, 208, 273
LpnPI CCDG 2 cut(s) 19, 293
MalI GATC 5 cut(s) 113, 122, 164, 210, 275
MboI GATC 5 cut(s) 111, 120, 162, 208, 273
MboII GAAGA 4 cut(s) 169, 172, 203, 218
MflI RGATCY 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 4 cut(s) 22, 71, 220, 250
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 247
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 7
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 95, 139
NdeII GATC 5 cut(s) 111, 120, 162, 208, 273
NmeAIII GCCGAG 1 cut(s) 168
OliI CACNNNNGTG 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PfeI GAWTC 2 cut(s) 127, 194
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspPI GGNCC 2 cut(s) 9, 93
PsuI RGATCY 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 247
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 5 cut(s) 111, 120, 162, 208, 273
Sau96I GGNCC 2 cut(s) 9, 93
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 7
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 247
Sse9I AATT 1 cut(s) 169
SsiI CCGC 4 cut(s) 87, 96, 131, 140
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 4 cut(s) 56, 77, 123, 211
TasI AATT 1 cut(s) 169
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 127, 194
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.