Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018682

Physical Location & Seq

Genomic Coordinates Forward (+)

37151472 .. 37152936

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG222600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTGCTCAGCGTCAGCAATTGGCCTCTGTATCCATATACACCACCGTTCTCACAATCCCATCGCCTTCGAACCCATCGTCGCCGACACCAAGTGCCGCCGCGAGGACCGCAAATGGGAGAATTTGCACTTGGATCGAGACTCCACCCCCACCGCTGAGTTCCAACATGAGTGGAAGGATTTCATGGAGACGTTCAATGTCACCAAATGGCCGTTGGTCTTGTTGTTCCCCAAGATTGATGTCGACCCCGTCGATGGCTTTATCAGCGAGTACGAGTTAACTCAGTGGATCTTGGTAGGAAAACAACCATCCCAACGCAAGCCTAGCATATCAAATCCCAACCAGAGAAGCAAGAGATTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

121

Amino Acids

14.16

Weight (kDa)

7.01

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018682)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001428.1_g000025
rosa_roxburghii	Rroxscaffold_7G00177460 Rroxscaffold_7G00195080
rosa_samantha	Rh1BG146300 Rh1DG178300 Rh2AG286200 Rh2DG311700 Rh5CG235500 Rh6CG222600 Rh6DG040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	97, 100, 109, 153
AclWI	GGATC	2 cut(s)	141, 296
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	121
AdeI	CACNNNGTG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	103, 115, 254
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	132, 182
AlwI	GGATC	2 cut(s)	141, 296
AoxI	GGCC	2 cut(s)	22, 209
ApoI	RAATTY	1 cut(s)	121
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	193
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	4 cut(s)	68, 83, 248, 316
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	132, 182
BfaI	CTAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	97, 100
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	2 cut(s)	98, 101
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	7
Bpu14I	TTCGAA	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 115, 254
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	3 cut(s)	103, 115, 254
BseMII	CTCAG	3 cut(s)	21, 147, 296
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	24, 211
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	103, 115, 254
BsmAI	GTCTC	2 cut(s)	132, 182
BsmBI	CGTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	24, 211
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	133, 288
Bsp1720I	GCTNAGC	1 cut(s)	7
BspACI	CCGC	4 cut(s)	97, 100, 109, 153
BspANI	GGCC	2 cut(s)	24, 211
BspCNI	CTCAG	3 cut(s)	20, 148, 295
BspFNI	CGCG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	141, 296
BspT104I	TTCGAA	1 cut(s)	69
BssMI	GATC	2 cut(s)	133, 288
Bst4CI	ACNGT	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	3 cut(s)	7, 156, 282
BstF5I	GGATG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	136, 291
BstMAI	GTCTC	2 cut(s)	132, 182
BstMBI	GATC	2 cut(s)	133, 288
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 264, 324
BstUI	CGCG	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	24, 211
BtgZI	GCGATG	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	271
CspCI	CAANNNNNGTGG	2 cut(s)	152, 187
CviAII	CATG	2 cut(s)	167, 184
CviJI	RGCY	4 cut(s)	24, 211, 258, 322
CviKI_1	RGCY	4 cut(s)	24, 211, 258, 322
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	7, 156, 282
DpnI	GATC	2 cut(s)	135, 290
DpnII	GATC	2 cut(s)	133, 288
DraIII	CACNNNGTG	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	2 cut(s)	170, 187
FaiI	YATR	5 cut(s)	36, 38, 168, 185, 329
FatI	CATG	2 cut(s)	166, 183
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	97, 100
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	97, 100
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	97, 100
HaeIII	GGCC	2 cut(s)	24, 211
Hin1II	CATG	2 cut(s)	170, 187
HincII	GTYRAC	2 cut(s)	244, 279
HindII	GTYRAC	2 cut(s)	244, 279
HinfI	GANTC	1 cut(s)	140
HpaI	GTTAAC	1 cut(s)	279
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	244, 279
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	244, 279
Hpy99I	CGWCG	2 cut(s)	83, 254
HpyAV	CCTTC	2 cut(s)	76, 169
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 264, 324
HpyF3I	CTNAG	3 cut(s)	7, 156, 282
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	170, 187
KspAI	GTTAAC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	133, 288
LpnPI	CCDG	1 cut(s)	356
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	135, 290
MboI	GATC	2 cut(s)	133, 288
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	18, 121
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	35, 97
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	108, 264, 324
NdeII	GATC	2 cut(s)	133, 288
NlaIII	CATG	2 cut(s)	170, 187
NmuCI	GTSAC	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 249
PdmI	GAANNNNTTC	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	98, 101
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	288
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	97, 100
Sau3AI	GATC	2 cut(s)	133, 288
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	194
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	18, 121
SsiI	CCGC	4 cut(s)	97, 100, 109, 153
SspMI	CTAG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	47
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	69, 136, 243, 252
TasI	AATT	2 cut(s)	18, 121
TauI	GCSGC	2 cut(s)	99, 102
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	290
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	243
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.