Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018682

Physical Location & Seq

Genomic Coordinates Forward (+)

38253615 .. 38253926

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG311700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTATGCAATTCTGATTCAATGCACAATGGATCGAGACTCCGCCCCCACCGCCGAGTTCCAACATGAGTGGAAGGATTTCATGGAGACGTTCAATGTCACCAAATGGCCGTTGGTCTTGTTGTTCCCCAAGATTGATGTCGACCCCGTCGATGGCTTTATCAGCGAGCACGAGTTAACTCAATGGATCTTGGTAGGAAAACAACCAGCCCAACGCAAGCATAACATATCAGATCCCAACCAGAGAAGCAAGAGATTGCCCCAAACCAAATTTCAGAACCAACAGACCACCACGCAAGAACTTGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

103

Amino Acids

12.14

Weight (kDa)

6.27

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018682)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001428.1_g000025
rosa_roxburghii	Rroxscaffold_7G00177460 Rroxscaffold_7G00195080
rosa_samantha	Rh1BG146300 Rh1DG178300 Rh2AG286200 Rh2DG311700 Rh5CG235500 Rh6CG222600 Rh6DG040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	2 cut(s)	42, 51
AclWI	GGATC	3 cut(s)	39, 194, 227
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	20, 94
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	30, 80
AlwI	GGATC	3 cut(s)	39, 194, 227
AoxI	GGCC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	91
BauI	CACGAG	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	30, 80
Bme1390I	CCNGG	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	30, 80
BsmBI	CGTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	31, 186, 232
BspACI	CCGC	2 cut(s)	42, 51
BspANI	GGCC	1 cut(s)	109
BspPI	GGATC	3 cut(s)	39, 194, 227
BssMI	GATC	3 cut(s)	31, 186, 232
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	167, 218
BstKTI	GATC	3 cut(s)	34, 189, 235
BstMAI	GTCTC	2 cut(s)	30, 80
BstMBI	GATC	3 cut(s)	31, 186, 232
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 162
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	186, 232
BstYI	RGATCY	2 cut(s)	186, 232
BsuRI	GGCC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	167, 218
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
CviAII	CATG	2 cut(s)	65, 82
CviJI	RGCY	3 cut(s)	109, 156, 209
CviKI_1	RGCY	3 cut(s)	109, 156, 209
DpnI	GATC	3 cut(s)	33, 188, 234
DpnII	GATC	3 cut(s)	31, 186, 232
EaeI	YGGCCR	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	68, 85
FaiI	YATR	5 cut(s)	6, 66, 83, 222, 227
FatI	CATG	2 cut(s)	64, 81
FblI	GTMKAC	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	68, 85
HincII	GTYRAC	2 cut(s)	142, 177
HindII	GTYRAC	2 cut(s)	142, 177
HinfI	GANTC	2 cut(s)	16, 38
HpaI	GTTAAC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	142, 177
Hpy188I	TCNGA	3 cut(s)	15, 232, 276
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	142, 177
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	8, 24
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 162
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	68, 85
KspAI	GTTAAC	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	31, 186, 232
LpnPI	CCDG	3 cut(s)	219, 254, 292
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	33, 188, 234
MboI	GATC	3 cut(s)	31, 186, 232
MflI	RGATCY	2 cut(s)	186, 232
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	9, 269
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	2 cut(s)	50, 162
NdeII	GATC	3 cut(s)	31, 186, 232
NlaIII	CATG	2 cut(s)	68, 85
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	16
PflFI	GACNNNGTC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	186, 232
PsyI	GACNNNGTC	1 cut(s)	146
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	176
Sau3AI	GATC	3 cut(s)	31, 186, 232
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	2 cut(s)	92, 311
Sse9I	AATT	2 cut(s)	9, 269
SsiI	CCGC	2 cut(s)	42, 51
StyD4I	CCNGG	1 cut(s)	305
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	34, 141, 150
TasI	AATT	2 cut(s)	9, 269
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	70
Tth111I	GACNNNGTC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.