Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018682

Physical Location & Seq

Genomic Coordinates Forward (+)

36317127 .. 36318150

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTATGTGCATCACTATCACATTCACGGGTCTTACTTACGTAACTGGTGTTTACTTGGTGATGCCATTTGCTGTTGCGGATGATGTTGACAGTAAGTACAAACCATTAGGAGTTCAGGGCCTCAGTATTCATATACACCACCGTTCTCACAATCCCATCCCCTTCGACCCTCTTGTCGCCGACATCGAGCGCCGCCGCAAGGACCGCAAATGGGAGAACGATCACTTGGATCGAGATTTCGCCCCACCGCCGAGTCTCCAAGAGAAGAAGATCAAGAATTTGAGTGATTGTTCGGGAGAAGATTCAAATCAAGAAGATCGACAACGCCACGGCGAGGCAGTGATGGATTCACTTGGGTGGACAGAGGATTGTGAACTTGGGATCTCCCAGATGGATTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0019538 GO:0031974 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0070013 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

135

Amino Acids

15.4

Weight (kDa)

5.1

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018682)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001428.1_g000025
rosa_roxburghii	Rroxscaffold_7G00177460 Rroxscaffold_7G00195080
rosa_samantha	Rh1BG146300 Rh1DG178300 Rh2AG286200 Rh2DG311700 Rh5CG235500 Rh6CG222600 Rh6DG040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AciI	CCGC	5 cut(s)	80, 196, 199, 208, 251
AclWI	GGATC	2 cut(s)	240, 392
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	202, 214, 337
AgsI	TTSAA	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AleI	CACNNNNGTG	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	240, 392
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	121, 205
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	205
BccI	CCATC	3 cut(s)	167, 340, 388
BceAI	ACGGC	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	196
BisI	GCNGC	2 cut(s)	196, 199
BlsI	GCNGC	2 cut(s)	197, 200
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	121, 205
BmsI	GCATC	2 cut(s)	21, 54
BsaAI	YACGTR	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 214, 337
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	88, 159
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	202, 214, 337
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	202, 214, 337
BsmAI	GTCTC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	223, 232, 273, 319, 384
BspACI	CCGC	5 cut(s)	80, 196, 199, 208, 251
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	240, 392
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	223, 232, 273, 319, 384
Bst4CI	ACNGT	2 cut(s)	95, 146
BstBAI	YACGTR	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	88, 159
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	5 cut(s)	226, 235, 276, 322, 387
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	5 cut(s)	223, 232, 273, 319, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstSNI	TACGTA	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	88, 159
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	121, 205
Csp6I	GTAC	1 cut(s)	100
CviJI	RGCY	2 cut(s)	5, 123
CviKI_1	RGCY	2 cut(s)	5, 123
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	5 cut(s)	225, 234, 275, 321, 386
DpnII	GATC	5 cut(s)	223, 232, 273, 319, 384
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eco105I	TACGTA	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	121
FaiI	YATR	3 cut(s)	8, 135, 137
Fnu4HI	GCNGC	2 cut(s)	196, 199
FokI	GGATG	2 cut(s)	95, 146
Fsp4HI	GCNGC	2 cut(s)	196, 199
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	2 cut(s)	196, 199
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	256, 305, 350
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	4 cut(s)	55, 91, 363, 377
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	4 cut(s)	236, 277, 297, 314
Hpy8I	GTNNAC	4 cut(s)	55, 91, 363, 377
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	95, 146
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	12
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	42
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	223, 232, 273, 319, 384
LpnPI	CCDG	3 cut(s)	33, 104, 404
LweI	GCATC	2 cut(s)	21, 54
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	5 cut(s)	225, 234, 275, 321, 386
MboI	GATC	5 cut(s)	223, 232, 273, 319, 384
MboII	GAAGA	4 cut(s)	280, 283, 314, 329
MflI	RGATCY	1 cut(s)	384
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	134, 183, 331, 361
MslI	CAYNNNNRTG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	5 cut(s)	223, 232, 273, 319, 384
NmeAIII	GCCGAG	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	305, 350
PkrI	GCNGC	2 cut(s)	197, 200
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	121, 205
PsuI	RGATCY	1 cut(s)	384
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	358
SatI	GCNGC	2 cut(s)	196, 199
Sau3AI	GATC	5 cut(s)	223, 232, 273, 319, 384
Sau96I	GGNCC	2 cut(s)	121, 205
SchI	GAGTC	1 cut(s)	265
SetI	ASST	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	21, 54
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	358
SnaBI	TACGTA	1 cut(s)	43
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	5 cut(s)	80, 196, 199, 208, 251
TaaI	ACNGT	2 cut(s)	95, 146
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	168, 189, 235, 322
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	2 cut(s)	198, 201
TfiI	GAWTC	2 cut(s)	305, 350
TscAI	CASTG	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.