Rroxscaffold_7G00211200

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017845
Physical Location & Seq
Reverse (-)
61659015 .. 61660214
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211200.1

Sequence Viewer

Length: 612 bp
ATGGCTCAGGCTGTGCTGCACGCCTGCACTCTGCTTCTTTGGTCGGAACCCGTTGCTTCACTCCCTCTACAGAGTCCGCATTACGCTTACAGGGTCCGTGATCGTTTACGGAAGCAAGTATTTGTTCCTCTACGTAAAGTGTTCAAGTTAACATCAGTGCAGAAGAAGAAGCCATCATTCCGAAAGCATAAGGCCTTGGTTGCTTTGAAAATTTACCAGAAGATCTTCAGGCCTCAGGGTTTCGAAAGTGAGCTTTTATACCCCTATTGTTTGAAGATTGTGGACTTGTTGAGGAATGCAAGCATTGGGACAATGACGGAGGTGGCTTGCATTTCAATGGGGTTACTGATTTCAGAACTGAGTGCAAATCCGTGGAAAGGAAAAGTATTCTCCTCGGCAGGAAGGATGTTCAAGATGCACAATGTTGAAGGAGACAGTCTCAGATCAAAATGTGAGTTCATGAGGCAGCACAGAGTGTGTAGAGATGGTGGATATCCACAATATTTAGAACCAAGTTCTGCAGATTGCCACACAAGAAAAGCTAAGCAACACGGAGATGCCCGAGAAGATTTTAGTGCTCACTTACAGGTCACCTCCTCAAATGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

203

Amino Acids

23.22

Weight (kDa)

9.76

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 107 - 158 3.1e-06 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 6 cut(s) 145, 208, 274, 336, 412, 428
AluBI AGCT 2 cut(s) 253, 542
AluI AGCT 2 cut(s) 253, 542
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 2 cut(s) 426, 443
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 2 cut(s) 192, 230
ApeKI GCWGC 2 cut(s) 16, 466
ApoI RAATTY 1 cut(s) 210
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 583
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 1 cut(s) 94
AxyI CCTNAGG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 2 cut(s) 3, 478
BccI CCATC 2 cut(s) 181, 479
BcoDI GTCTC 2 cut(s) 426, 443
BfmI CTRYAG 2 cut(s) 68, 519
BglII AGATCT 1 cut(s) 222
BisI GCNGC 2 cut(s) 17, 467
BlpI GCTNAGC 1 cut(s) 543
BlsI GCNGC 2 cut(s) 18, 468
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 48, 95
BmsI GCATC 2 cut(s) 405, 547
BplI GAGNNNNNCTC 2 cut(s) 423, 455
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 195, 371, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse21I CCTNAGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 195, 371, 393
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 4 cut(s) 20, 248, 350, 454
BseRI GAGGAG 2 cut(s) 382, 586
BseXI GCAGC 2 cut(s) 3, 478
BsgI GTGCAG 2 cut(s) 10, 179
BshFI GGCC 2 cut(s) 194, 232
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 561
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 2 cut(s) 426, 443
BsmFI GGGAC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 2 cut(s) 194, 232
BsoBI CYCGRG 1 cut(s) 561
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 3 cut(s) 100, 222, 443
Bsp1720I GCTNAGC 1 cut(s) 543
BspACI CCGC 1 cut(s) 77
BspANI GGCC 2 cut(s) 194, 232
BspCNI CTCAG 4 cut(s) 19, 247, 351, 453
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 48, 95
BspMAI CTGCAG 1 cut(s) 523
BspT104I TTCGAA 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 195, 371, 393
BssMI GATC 3 cut(s) 100, 222, 443
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 21, 25, 301, 328
BstDEI CTNAG 5 cut(s) 6, 234, 359, 440, 543
BstDSI CCRYGG 1 cut(s) 371
BstEII GGTNACC 1 cut(s) 589
BstF5I GGATG 1 cut(s) 411
BstKTI GATC 3 cut(s) 103, 225, 446
BstMAI GTCTC 2 cut(s) 426, 443
BstMBI GATC 3 cut(s) 100, 222, 443
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 589
BstSFI CTRYAG 2 cut(s) 68, 519
BstSNI TACGTA 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 3, 478
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 2 cut(s) 194, 232
BtgI CCRYGG 1 cut(s) 371
BtsCI GGATG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 4 cut(s) 21, 25, 301, 328
CciI TCATGA 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 94
CviAII CATG 1 cut(s) 460
CviJI RGCY 8 cut(s) 5, 11, 172, 194, 232, 253, 326, 542
CviKI_1 RGCY 8 cut(s) 5, 11, 172, 194, 232, 253, 326, 542
DdeI CTNAG 5 cut(s) 6, 234, 359, 440, 543
DpnI GATC 3 cut(s) 102, 224, 445
DpnII GATC 3 cut(s) 100, 222, 443
DraIII CACNNNGTG 1 cut(s) 475
Eco105I TACGTA 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 195
Eco147I AGGCCT 2 cut(s) 194, 232
Eco32I GATATC 1 cut(s) 494
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 561
Eco91I GGTNACC 1 cut(s) 589
EcoO65I GGTNACC 1 cut(s) 589
EcoRV GATATC 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 463
FaiI YATR 3 cut(s) 189, 259, 461
FaqI GGGAC 1 cut(s) 322
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 17, 467
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 17, 467
GluI GCNGC 2 cut(s) 17, 467
HaeIII GGCC 2 cut(s) 194, 232
Hin1II CATG 1 cut(s) 463
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 1 cut(s) 73
HpaI GTTAAC 1 cut(s) 150
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 3 cut(s) 107, 150, 283
Hpy188I TCNGA 4 cut(s) 46, 182, 355, 443
Hpy188III TCNNGA 2 cut(s) 412, 460
Hpy8I GTNNAC 3 cut(s) 107, 150, 283
HpyAV CCTTC 2 cut(s) 396, 422
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 8 cut(s) 19, 27, 160, 299, 330, 365, 418, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 5 cut(s) 6, 234, 359, 440, 543
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 150
Kzo9I GATC 3 cut(s) 100, 222, 443
LpnPI CCDG 7 cut(s) 37, 76, 214, 221, 230, 384, 572
Lsp1109I GCAGC 2 cut(s) 3, 478
LweI GCATC 2 cut(s) 405, 547
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 2 cut(s) 342, 589
MalI GATC 3 cut(s) 102, 224, 445
MboI GATC 3 cut(s) 100, 222, 443
MboII GAAGA 6 cut(s) 175, 178, 217, 232, 286, 578
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 1 cut(s) 210
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 9 cut(s) 75, 138, 243, 285, 313, 403, 456, 604, 607
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 2 cut(s) 149, 610
MslI CAYNNNNRTG 2 cut(s) 335, 555
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 3 cut(s) 100, 222, 443
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 2 cut(s) 48, 95
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 589
NspV TTCGAA 1 cut(s) 243
PagI TCATGA 1 cut(s) 459
PceI AGGCCT 2 cut(s) 194, 232
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 224
PkrI GCNGC 2 cut(s) 18, 468
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 589
PspN4I GGNNCC 2 cut(s) 48, 95
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 335, 555
SaqAI TTAA 2 cut(s) 149, 610
SatI GCNGC 2 cut(s) 17, 467
Sau3AI GATC 3 cut(s) 100, 222, 443
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 82
SduI GDGCHC 1 cut(s) 580
SetI ASST 6 cut(s) 136, 255, 324, 544, 591, 596
SfaNI GCATC 2 cut(s) 405, 547
SfcI CTRYAG 2 cut(s) 68, 519
SfuI TTCGAA 1 cut(s) 243
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 2 cut(s) 335, 555
SnaBI TACGTA 1 cut(s) 134
Sse9I AATT 1 cut(s) 210
SseBI AGGCCT 2 cut(s) 194, 232
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 503
StuI AGGCCT 2 cut(s) 194, 232
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 210
Tru1I TTAA 2 cut(s) 149, 610
Tru9I TTAA 2 cut(s) 149, 610
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 16, 466
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 1 cut(s) 448
TspGWI ACGGA 5 cut(s) 86, 124, 332, 360, 567
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.