Rorug05G0549200

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017845
Physical Location & Seq
Reverse (-)
73787276 .. 73787548
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0549200.1

Sequence Viewer

Length: 273 bp
ATGGGTTCAACACTGACACGATTGAAGCTGTGGGAGGAGAAACTCTACAAGGATTTGAAGTACGAAAAGGAAGCCATGAAATCAGATAAGAGCAATCCCCATGCAGAAACCAAGAAAGAGGAGGATCAGATCATAATGGTGAACGCCAAAATTAAGGTTTTCCAAGAGAGTGCTGAAAACAACTCTAAGAAAATTACTGAATTGAGAGACAAACAGTTGCTTCCCAAACTAGTTGAGCAGCTAGATGGGATGATGGAAAACTGGAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

90

Amino Acids

10.66

Weight (kDa)

7.88

Isoelectric Point (pI)

23.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 3 - 89 2.5e-10 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 132
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 3 cut(s) 9, 25, 58
AhlI ACTAGT 1 cut(s) 229
AluBI AGCT 2 cut(s) 28, 241
AluI AGCT 2 cut(s) 28, 241
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 151
BbvI GCAGC 1 cut(s) 250
BccI CCATC 2 cut(s) 239, 247
BcoDI GTCTC 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 2 cut(s) 230, 242
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 2 cut(s) 50, 134
BseXI GCAGC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 201
Bsp143I GATC 2 cut(s) 124, 129
BspPI GGATC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 266
BssMI GATC 2 cut(s) 124, 129
Bst4CI ACNGT 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 2 cut(s) 127, 132
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 124, 129
BstV1I GCAGC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 11
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 76, 101
CviJI RGCY 3 cut(s) 28, 74, 241
CviKI_1 RGCY 3 cut(s) 28, 74, 241
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 126, 131
DpnII GATC 2 cut(s) 124, 129
FaeI CATG 2 cut(s) 79, 104
FaiI YATR 3 cut(s) 77, 102, 134
FatI CATG 2 cut(s) 75, 100
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 2 cut(s) 230, 242
GluI GCNGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 79, 104
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 85, 129, 272
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 2 cut(s) 79, 104
Kzo9I GATC 2 cut(s) 124, 129
LpnPI CCDG 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 2 cut(s) 230, 242
MalI GATC 2 cut(s) 126, 131
MboI GATC 2 cut(s) 124, 129
MluCI AATT 3 cut(s) 150, 192, 200
MnlI CCTC 3 cut(s) 28, 112, 115
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 137
NdeII GATC 2 cut(s) 124, 129
NlaIII CATG 2 cut(s) 79, 104
PkrI GCNGC 1 cut(s) 240
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 2 cut(s) 124, 129
SetI ASST 3 cut(s) 30, 159, 243
SgeI CNNG 8 cut(s) 30, 61, 88, 113, 124, 176, 242, 254
SmiMI CAYNNNNRTG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 3 cut(s) 150, 192, 200
SspMI CTAG 2 cut(s) 230, 242
TaaI ACNGT 1 cut(s) 216
TasI AATT 3 cut(s) 150, 192, 200
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 18
XspI CTAG 2 cut(s) 230, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.