Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017845

Physical Location & Seq

Genomic Coordinates Reverse (-)

73787842 .. 73789270

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0549300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTTGACTGCTGCAACTGCAAATACAATTGCTAACTCACCACCATTGCCAATAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTACGGGGTTCATTTACAGGTTCAGCAGGTCAAAGACAGAGACAAGCTGGGCTTTATGGGTCTGGTTCAAGAAGAGCTTGTGTTGATAGAAGCGTGGTACATTTTCAGATGAGACCGGTGGGGATTGGTGGAGGGTTGTCACTTGAGACAAGAAAACCAATCACACCAATCGTGGGGTCTAGTCGAATGCAGTCTGCTTCTGTAATATGTGCTTCTGCTTTGAATGCCAGATGTGCTACAGGACTACAAACCAAACCTGTTACACACCAGGCTCCAACAATCACAAGTCTTCCCCAGAAGAGGAATTCCCTGCAGCATAAGCTTGATGATAGTGGTAAACCGCCTCGTAACAAGGGAAATGATGACGGTGGTGGTAATAATGGGAGGGGTCGACCTCCAAACAACGGAGGATCAGAAGGCTTCATTTTTTTCGGCTTTCTTCTTTTCCTGAGCTACTTGAAGGATTTAGAAAACGAGGGTTCTTATCGAGAAAACCTGAGCTACTTGAAGGATTTAGAAAACGAGGGTTCCTATCGAGAAAACCTGAGCTACTTGAAGGATTTAGAAAACGAGGGTTCTTATCGAGAAAAAAGGACAGGAGATCATGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

236

Amino Acids

25.52

Weight (kDa)

9.45

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017845)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014942
rosa_multiflora	Rmu_sc0001716.1_g000034
rosa_roxburghii	Rroxscaffold_7G00211160 Rroxscaffold_7G00211170 Rroxscaffold_7G00211200
rosa_rugosa	Rorug05G0549200 Rorug05G0549300 Rorug05G0549700 Rorug05G0549900
rosa_samantha	Rh6AG065900 Rh6AG066200 Rh6AG066300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	487
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	514
AcsI	RAATTY	1 cut(s)	400
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	269, 396, 500
AgeI	ACCGGT	1 cut(s)	211
AgsI	TTSAA	5 cut(s)	165, 319, 556, 604, 652
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	6 cut(s)	143, 173, 418, 549, 597, 645
AluI	AGCT	6 cut(s)	143, 173, 418, 549, 597, 645
Alw26I	GTCTC	3 cut(s)	130, 202, 236
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	11, 409
ApoI	RAATTY	1 cut(s)	400
AsiGI	ACCGGT	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	365
BcoDI	GTCTC	3 cut(s)	130, 202, 236
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	333, 407
BfuAI	ACCTGC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	12, 410
BlsI	GCNGC	2 cut(s)	13, 411
Bme1390I	CCNGG	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	369, 625
BmrFI	CCNGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	377
Bpu10I	CCTNAGC	3 cut(s)	545, 593, 641
BpuEI	CTTGAG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 396, 500
Bse118I	RCCGGY	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	365
BseLI	CCNNNNNNNGG	3 cut(s)	269, 396, 500
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	3 cut(s)	536, 584, 632
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	1 cut(s)	66
BshTI	ACCGGT	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	269, 396, 500
BsmAI	GTCTC	3 cut(s)	130, 202, 236
BsmI	GAATGC	2 cut(s)	288, 325
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	506, 697
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	3 cut(s)	537, 585, 633
BspLI	GGNNCC	2 cut(s)	369, 625
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	211
BssMI	GATC	2 cut(s)	506, 697
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	2 cut(s)	163, 389
BstDEI	CTNAG	3 cut(s)	545, 593, 641
BstKTI	GATC	2 cut(s)	509, 700
BstMAI	GTCTC	3 cut(s)	130, 202, 236
BstMBI	GATC	2 cut(s)	506, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 92, 320, 329, 415
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstSFI	CTRYAG	2 cut(s)	333, 407
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	1 cut(s)	377
BstXI	CCANNNNNNTGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	66
BveI	ACCTGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	194
CspAI	ACCGGT	1 cut(s)	211
CviAII	CATG	1 cut(s)	701
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	545, 593, 641
DpnI	GATC	2 cut(s)	508, 699
DpnII	GATC	2 cut(s)	506, 697
Eam1104I	CTCTTC	2 cut(s)	163, 389
EarI	CTCTTC	2 cut(s)	163, 389
Eco31I	GGTCTC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	704
FaiI	YATR	4 cut(s)	153, 304, 414, 702
FalI	AAGNNNNNCTT	4 cut(s)	132, 164, 157, 189
FatI	CATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	12, 410
Fsp4HI	GCNGC	2 cut(s)	12, 410
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	2 cut(s)	12, 410
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	1 cut(s)	704
HincII	GTYRAC	2 cut(s)	6, 488
HindII	GTYRAC	2 cut(s)	6, 488
HindIII	AAGCTT	1 cut(s)	416
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	6, 434, 488
Hpy188I	TCNGA	2 cut(s)	204, 511
Hpy188III	TCNNGA	5 cut(s)	165, 544, 584, 632, 680
Hpy8I	GTNNAC	3 cut(s)	6, 434, 488
HpyAV	CCTTC	4 cut(s)	506, 550, 598, 646
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	4 cut(s)	14, 20, 286, 409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 92, 320, 329, 415
HpyF3I	CTNAG	3 cut(s)	545, 593, 641
Hsp92II	CATG	1 cut(s)	704
Kzo9I	GATC	2 cut(s)	506, 697
LguI	GCTCTTC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	234, 355, 443
MalI	GATC	2 cut(s)	508, 699
MboI	GATC	2 cut(s)	506, 697
MboII	GAAGA	4 cut(s)	180, 377, 406, 527
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	2 cut(s)	27, 400
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	9 cut(s)	221, 390, 450, 474, 497, 501, 565, 613, 661
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	365
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	2 cut(s)	288, 325
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	5 cut(s)	17, 92, 320, 329, 415
NdeII	GATC	2 cut(s)	506, 697
NlaIII	CATG	1 cut(s)	704
NlaIV	GGNNCC	2 cut(s)	369, 625
NmuCI	GTSAC	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	163
PctI	GAATGC	2 cut(s)	288, 325
PinAI	ACCGGT	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	13, 411
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	369, 625
PstI	CTGCAG	1 cut(s)	411
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	12, 410
Sau3AI	GATC	2 cut(s)	506, 697
ScrFI	CCNGG	1 cut(s)	365
SfcI	CTRYAG	2 cut(s)	333, 407
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	27, 400
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	5 cut(s)	280, 487, 583, 631, 679
TasI	AATT	2 cut(s)	27, 400
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	2 cut(s)	11, 409
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	96, 508
TspGWI	ACGGA	1 cut(s)	516
XapI	RAATTY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	487
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.