Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017845

Physical Location & Seq

Genomic Coordinates Forward (+)

9635947 .. 9636426

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG065900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAAGCATTGGTGAGGGGGCTAAAACTTCCTAATCAAATAGTAGCTTGCTTGATGAACAAGCAAATAAGTGACGAAACTGCAGATCTAGAATGGGAGAAACTAGTACGAGAGTTGTCAAACAAAGGCATGTTTAAGAATTGTGTTGTTGTGTGTGACATGCCGAGCATGAAAGGGACAAAGACGGAGGTGGCTTGCATTTCAATGGGGTTACTGATTTCAGAACTGAGTGCAAAATCCTTGGAAGGGAAAAGTATTCTCCTCGGCAGGAAGGATGTTCAAGATGCCAATGTTGAAGGAGACAGTCTCAGATCAAAATGTGAGTTCATGAGGCAGCACAGGGTGTTTAGAGATGGTGGATATCCACAATATTTAGAACCAAGTTCTGCAGATTGGCACACAAGAAAAGCTAAGCAACATGGAGATGCCCGAGAAGATTTTAGTGCTCACTTACAGGTCACCTCCTCAAAAGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2828

Protein Analysis

159

Amino Acids

17.87

Weight (kDa)

7.64

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017845)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014942
rosa_multiflora	Rmu_sc0001716.1_g000034
rosa_roxburghii	Rroxscaffold_7G00211160 Rroxscaffold_7G00211170 Rroxscaffold_7G00211200
rosa_rugosa	Rorug05G0549200 Rorug05G0549300 Rorug05G0549700 Rorug05G0549900
rosa_samantha	Rh6AG065900 Rh6AG066200 Rh6AG066300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	204, 281, 296
AhlI	ACTAGT	1 cut(s)	103
AluBI	AGCT	2 cut(s)	47, 410
AluI	AGCT	2 cut(s)	47, 410
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	294, 311
Ama87I	CYCGRG	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	25, 451
AvaI	CYCGRG	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	294, 311
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	2 cut(s)	89, 104
BfmI	CTRYAG	2 cut(s)	81, 387
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	335
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	274, 415
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu1102I	GCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	240, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	240, 262
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	218, 322
BseRI	GAGGAG	2 cut(s)	251, 454
BseXI	GCAGC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	294, 311
BsmFI	GGGAC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	2 cut(s)	85, 311
Bsp1720I	GCTNAGC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	219, 321
BspHI	TCATGA	1 cut(s)	327
BspMAI	CTGCAG	2 cut(s)	85, 391
BssECI	CCNNGG	2 cut(s)	240, 262
BssMI	GATC	2 cut(s)	85, 311
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	6, 49, 196
BstDEI	CTNAG	3 cut(s)	227, 308, 411
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	88, 314
BstMAI	GTCTC	2 cut(s)	294, 311
BstMBI	GATC	2 cut(s)	85, 311
BstNSI	RCATGY	2 cut(s)	133, 163
BstPI	GGTNACC	1 cut(s)	457
BstSFI	CTRYAG	2 cut(s)	81, 387
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	6, 49, 196
CciI	TCATGA	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	5 cut(s)	130, 160, 169, 328, 419
CviJI	RGCY	4 cut(s)	22, 47, 194, 410
CviKI_1	RGCY	4 cut(s)	22, 47, 194, 410
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	227, 308, 411
DpnI	GATC	2 cut(s)	87, 313
DpnII	GATC	2 cut(s)	85, 311
DraIII	CACNNNGTG	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	429
Eco91I	GGTNACC	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	5 cut(s)	133, 163, 172, 331, 422
FaiI	YATR	5 cut(s)	131, 161, 170, 329, 420
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	129, 159, 168, 327, 418
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	2 cut(s)	89, 104
GluI	GCNGC	1 cut(s)	335
Hin1II	CATG	5 cut(s)	133, 163, 172, 331, 422
HphI	GGTGA	2 cut(s)	25, 451
Hpy188I	TCNGA	2 cut(s)	223, 311
Hpy188III	TCNNGA	3 cut(s)	89, 281, 328
HpyAV	CCTTC	3 cut(s)	239, 265, 290
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	5 cut(s)	4, 83, 198, 233, 389
HpyF3I	CTNAG	3 cut(s)	227, 308, 411
Hsp92II	CATG	5 cut(s)	133, 163, 172, 331, 422
Kzo9I	GATC	2 cut(s)	85, 311
LpnPI	CCDG	3 cut(s)	253, 325, 440
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	274, 415
MaeI	CTAG	2 cut(s)	89, 104
MaeIII	GTNAC	4 cut(s)	71, 155, 210, 457
MalI	GATC	2 cut(s)	87, 313
MboI	GATC	2 cut(s)	85, 311
MboII	GAAGA	1 cut(s)	446
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	6 cut(s)	9, 181, 272, 324, 472, 475
MseI	TTAA	2 cut(s)	135, 478
MslI	CAYNNNNRTG	2 cut(s)	203, 423
NdeII	GATC	2 cut(s)	85, 311
NlaIII	CATG	5 cut(s)	133, 163, 172, 331, 422
NmeAIII	GCCGAG	2 cut(s)	189, 243
NmuCI	GTSAC	3 cut(s)	71, 155, 457
NspI	RCATGY	2 cut(s)	133, 163
PagI	TCATGA	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	457
PstI	CTGCAG	2 cut(s)	85, 391
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	203, 423
SaqAI	TTAA	2 cut(s)	135, 478
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	2 cut(s)	85, 311
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	5 cut(s)	49, 192, 412, 459, 464
SfaNI	GCATC	2 cut(s)	274, 415
SfcI	CTRYAG	2 cut(s)	81, 387
SmiMI	CAYNNNNRTG	2 cut(s)	203, 423
SpeI	ACTAGT	1 cut(s)	103
Sse9I	AATT	1 cut(s)	139
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	2 cut(s)	89, 104
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	305
TasI	AATT	1 cut(s)	139
Tru1I	TTAA	2 cut(s)	135, 478
Tru9I	TTAA	2 cut(s)	135, 478
TseFI	GTSAC	3 cut(s)	71, 155, 457
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	3 cut(s)	71, 155, 457
TspDTI	ATGAA	3 cut(s)	71, 185, 316
TspGWI	ACGGA	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	2 cut(s)	133, 163
XspI	CTAG	2 cut(s)	89, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.