Rh6AG066300

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017845
Physical Location & Seq
Forward (+)
9705569 .. 9708151
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG066300.1

Sequence Viewer

Length: 618 bp
ATGGAGATGCCCGAGAAGATTTTAGTGCTCACTTACAGGTCACCTCCTCAAAAGATTTTTAAAATCAACAAAAGTGTAGCTGGAAGGAAAATAGGGTATTGGACCAGTTATAGAAAGAAGGGGTATGACAAAATGCCACTTCTTCTGTTTATGGATCTCCGTTTTTTTAGCAGCAGCAGTCTTCTTAATTTGTTGTTCTTTGAAGAACCAGATTCAAGAACTCAGTTCCAGCGACAAGATCTATCTGCAACTTCAATAATAAAACACTCTCCTAAAGCAGAAGAGTTGATGCAATCTGCAGTTTCAAGAAATGAATTCAAGAACTTGCTTGTGTTTGATGTTGATGCATACAATAAGAATGCCGTGTCACACACTGAAACGCCGCCAGAGACTCCCAAGTTCGGATATTATTGGCTGTCGGCTCCACCAAAGCCGAAGGAGCTGACCGACTATGAAGAAGAGGCCTGGAAGCTTGACTCTCTCACCACTCTCAAGACGATAGTTTGTCTTAGAATGATGGAGAAGCCTAACAAAGAAGCGTTCTACAAATCCCTCTTGTGGGTCCACAAAAACCACCCAAAAACCCTAGCTCTAATGTCATGGTTTTCGGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

205

Amino Acids

24.0

Weight (kDa)

9.32

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 144 - 198 9.6e-12 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 383
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 401, 558, 559
AgsI TTSAA 5 cut(s) 203, 216, 255, 306, 319
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 4 cut(s) 80, 442, 472, 590
AluI AGCT 4 cut(s) 80, 442, 472, 590
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 1 cut(s) 462
ApeKI GCWGC 2 cut(s) 171, 174
ApoI RAATTY 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 102, 562
AsuHPI GGTGA 2 cut(s) 33, 475
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 2 cut(s) 102, 562
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 183, 186
BccI CCATC 1 cut(s) 511
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 587
BfmI CTRYAG 1 cut(s) 297
BglII AGATCT 1 cut(s) 238
BisI GCNGC 3 cut(s) 172, 175, 383
BlsI GCNGC 3 cut(s) 173, 176, 384
Bme1390I CCNGG 1 cut(s) 466
Bme18I GGWCC 2 cut(s) 102, 562
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 102, 562
BmiI GGNNCC 2 cut(s) 423, 563
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 279, 334
BpiI GAAGAC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 476
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 558, 559
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 401, 558, 559
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 183, 186
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 11
BslI CCNNNNNNNGG 3 cut(s) 401, 558, 559
BsmAI GTCTC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 154, 238
BspACI CCGC 1 cut(s) 383
BspANI GGCC 1 cut(s) 464
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 423, 563
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 105
BssMI GATC 2 cut(s) 154, 238
Bst2UI CCWGG 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 276, 453
BstDEI CTNAG 2 cut(s) 222, 509
BstEII GGTNACC 1 cut(s) 39
BstKTI GATC 2 cut(s) 157, 241
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 154, 238
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 466
BstPI GGTNACC 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 183, 186
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 2 cut(s) 154, 238
BstYI RGATCY 2 cut(s) 154, 238
BsuRI GGCC 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 372
Cfr13I GGNCC 2 cut(s) 102, 562
CviAII CATG 1 cut(s) 600
DdeI CTNAG 2 cut(s) 222, 509
DpnI GATC 2 cut(s) 156, 240
DpnII GATC 2 cut(s) 154, 238
DraI TTTAAA 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 276, 453
EarI CTCTTC 2 cut(s) 276, 453
Eco147I AGGCCT 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 102, 562
Eco88I CYCGRG 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 349
FaeI CATG 1 cut(s) 603
FaiI YATR 6 cut(s) 111, 126, 152, 349, 453, 601
FatI CATG 1 cut(s) 599
Fnu4HI GCNGC 3 cut(s) 172, 175, 383
Fsp4HI GCNGC 3 cut(s) 172, 175, 383
FspBI CTAG 1 cut(s) 587
GluI GCNGC 3 cut(s) 172, 175, 383
HaeIII GGCC 1 cut(s) 464
Hin1II CATG 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 212, 391, 476
HphI GGTGA 2 cut(s) 33, 475
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 1 cut(s) 404
Hpy188III TCNNGA 4 cut(s) 216, 306, 319, 493
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 3 cut(s) 78, 112, 430
HpyCH4V TGCA 4 cut(s) 248, 292, 299, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 2 cut(s) 222, 509
Hsp92II CATG 1 cut(s) 603
Kzo9I GATC 2 cut(s) 154, 238
LmnI GCTCC 2 cut(s) 427, 439
LpnPI CCDG 8 cut(s) 22, 66, 118, 222, 242, 399, 451, 478
Lsp1109I GCAGC 2 cut(s) 183, 186
LweI GCATC 2 cut(s) 279, 334
MaeI CTAG 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 39, 366
MalI GATC 2 cut(s) 156, 240
MboI GATC 2 cut(s) 154, 238
MboII GAAGA 7 cut(s) 28, 134, 173, 215, 293, 467, 470
MflI RGATCY 2 cut(s) 154, 238
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 187, 314
MlyI GAGTC 2 cut(s) 385, 470
MnlI CCTC 4 cut(s) 54, 57, 454, 563
Mph1103I ATGCAT 1 cut(s) 349
MseI TTAA 2 cut(s) 60, 186
MspR9I CCNGG 1 cut(s) 466
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 2 cut(s) 154, 238
NlaIII CATG 1 cut(s) 603
NlaIV GGNNCC 2 cut(s) 423, 563
NmuCI GTSAC 2 cut(s) 39, 366
NsiI ATGCAT 1 cut(s) 349
PceI AGGCCT 1 cut(s) 464
PctI GAATGC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 173, 176, 384
PleI GAGTC 2 cut(s) 385, 470
PpsI GAGTC 2 cut(s) 385, 470
Psp6I CCWGG 1 cut(s) 464
PspEI GGTNACC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 2 cut(s) 423, 563
PspPI GGNCC 2 cut(s) 102, 562
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 2 cut(s) 154, 238
SaqAI TTAA 2 cut(s) 60, 186
SatI GCNGC 3 cut(s) 172, 175, 383
Sau3AI GATC 2 cut(s) 154, 238
Sau96I GGNCC 2 cut(s) 102, 562
SchI GAGTC 2 cut(s) 385, 470
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 41, 46, 82, 444, 474, 592
SfaNI GCATC 2 cut(s) 279, 334
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 102, 562
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 2 cut(s) 187, 314
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 1 cut(s) 383
SspMI CTAG 1 cut(s) 587
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 464
TaqII GACCGA 1 cut(s) 461
TasI AATT 2 cut(s) 187, 314
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 60, 186
Tru9I TTAA 2 cut(s) 60, 186
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 2 cut(s) 39, 366
TseI GCWGC 2 cut(s) 171, 174
Tsp45I GTSAC 2 cut(s) 39, 366
TspDTI ATGAA 2 cut(s) 327, 468
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 102, 562
XapI RAATTY 1 cut(s) 314
XspI CTAG 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.