Rroxscaffold_7G00216910

Protein phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
67549866 .. 67552095
2230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216910.1

Sequence Viewer

Length: 978 bp
ATGCATGAAATACTGCATAGTTCACAAAAGATGTCTGGTCTTTCGGGTAATAGAGGGAGTGCTATCAATAGTAAGTTGCGAATGAGGCCTGCGAAGCTGTTTGTGCCCGATTTTTGTCCAAGGCAGGAGTTCATTGAAATGGGATTAAAGAAGTTGAAAGAGGACAAAAAGGAATTTGAGGTGGAAGGGAGGGATTTCTGCTTGGCTAGTAAGAAAGGTGCTAGAAGGGAGTTCATGGAAGATGGGCACAGAGAAATGGTTGATATAATGGGAGATCCCAAGCAGGCATTTTTTGCTGTGATCGATGGGCACGGAGGTTGTGCAGCTGCTGATTATGTGGCTGAAAATTTAGGGGAGAACATTATGAAAGAGCTTGAACATGTTGGAGAGGATCAAGAACATGAATTGCAGCAGGCTATTCGCCAAGGCTACTCAGTCACAGACAAGGGCTTCCTTAGTCAGGGTGTGAGCAGTGGAGCATGTGCATCCAGTGTGGTGTTGAAGGATGGAGTGCTACATGTAGCGAATGTAGGAGATTGTAGAGTAGTTTTGAGTAACAAAGGAGTAGCAGATGTATTAACAAAAGACCACCGTTTGAGTAGTGAAGATGAGCGTCTCCGAATCGAAAACACTGGTGGCTTTGTGCAACATTTCCGCAATGGAGTTTGGAGACTTCAAGGCTCACTTGCAGTTTCTAGAGCCATTGGGGATCAACATTTGAAAGATTGGGTCATTTCTGAACCAGAAACTAAAACGATTCCTCTAACATCAGATTGCGAGTTCTTGATAATGGCTTCGGATGGCTTGTGGGACAAGGTAGATGATCAAGAGGCAGTGAATGTGGTTTTAAAAGAGAAGGATTCACTGAAGTCTTGCAAGAAGCTTGTGAATATGTCTTCAAGCAGAGGGAGCATGGATGACATAACTGTTATGGTGATCAACCTTCGAAGCTTTTTGGCAGCTGATCGTCTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

325

Amino Acids

36.04

Weight (kDa)

5.74

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 70 - 308 2e-55 Protein phosphatase 2C
PP2C_2 PF13672 91 - 280 6.8e-06 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018206)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0251221
rosa_laevigata RLG00000015473
rosa_multiflora Rmu_sc0004077.1_g000002
rosa_roxburghii Rroxscaffold_7G00216910
rosa_rugosa Rorug05G0500800
rosa_samantha Rh6AG010200 Rh6BG001800 Rh6CG007200 Rh6DG007700
rosa_wichuraiana Rw6G001000 Rw6G001110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 655
AclWI GGATC 3 cut(s) 269, 399, 717
AcsI RAATTY 2 cut(s) 173, 346
AcuI CTGAAG 1 cut(s) 887
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 2 cut(s) 379, 517
AgsI TTSAA 7 cut(s) 137, 157, 377, 502, 677, 721, 900
AluBI AGCT 6 cut(s) 97, 326, 373, 883, 951, 962
AluI AGCT 6 cut(s) 97, 326, 373, 883, 951, 962
Alw26I GTCTC 2 cut(s) 620, 664
AlwI GGATC 3 cut(s) 269, 399, 717
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 4 cut(s) 323, 326, 409, 959
ApoI RAATTY 2 cut(s) 173, 346
AsuHPI GGTGA 1 cut(s) 946
AsuII TTCGAA 1 cut(s) 946
BaeGI GKGCMC 3 cut(s) 108, 249, 312
BbsI GAAGAC 2 cut(s) 888, 962
BbvI GCAGC 4 cut(s) 313, 335, 421, 971
BccI CCATC 4 cut(s) 236, 299, 500, 794
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BclI TGATCA 2 cut(s) 823, 936
BcoDI GTCTC 2 cut(s) 620, 664
BfaI CTAG 3 cut(s) 207, 222, 696
BisI GCNGC 4 cut(s) 324, 327, 410, 960
BlsI GCNGC 4 cut(s) 325, 328, 411, 961
BmsI GCATC 1 cut(s) 494
BpiI GAAGAC 2 cut(s) 888, 962
Bpu14I TTCGAA 1 cut(s) 946
Bsa29I ATCGAT 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 119, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse1I ACTGG 2 cut(s) 489, 637
Bse3DI GCAATG 1 cut(s) 664
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 119, 424
BseGI GGATG 4 cut(s) 485, 511, 805, 922
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 489, 637
BseSI GKGCMC 3 cut(s) 108, 249, 312
BseXI GCAGC 4 cut(s) 313, 335, 421, 971
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 303
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 2 cut(s) 620, 664
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 946
Bsp1286I GDGCHC 3 cut(s) 108, 249, 312
Bsp143I GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
BspACI CCGC 1 cut(s) 655
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 446
BspDI ATCGAT 1 cut(s) 303
BspPI GGATC 3 cut(s) 269, 399, 717
BspT104I TTCGAA 1 cut(s) 946
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 489, 637
BssECI CCNNGG 2 cut(s) 119, 424
BssMI GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
BssT1I CCWWGG 2 cut(s) 119, 424
Bst4CI ACNGT 2 cut(s) 593, 928
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 946
BstC8I GCNNGC 3 cut(s) 90, 285, 414
BstDEI CTNAG 2 cut(s) 433, 455
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 4 cut(s) 485, 511, 805, 922
BstKTI GATC 7 cut(s) 277, 303, 394, 712, 826, 939, 967
BstMAI GTCTC 2 cut(s) 620, 664
BstMBI GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
BstMWI GCNNNNNNNGC 5 cut(s) 85, 94, 103, 293, 909
BstNSI RCATGY 3 cut(s) 383, 483, 521
BstSLI GKGCMC 3 cut(s) 108, 249, 312
BstV1I GCAGC 4 cut(s) 313, 335, 421, 971
BstV2I GAAGAC 2 cut(s) 888, 962
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 1 cut(s) 88
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 4 cut(s) 485, 511, 805, 922
BtsI GCAGTG 2 cut(s) 478, 840
BtsIMutI CAGTG 5 cut(s) 478, 496, 630, 840, 863
Cac8I GCNNGC 3 cut(s) 90, 285, 414
CaiI CAGNNNCTG 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 602
CviAII CATG 7 cut(s) 5, 235, 380, 401, 480, 518, 913
DdeI CTNAG 2 cut(s) 433, 455
DpnI GATC 7 cut(s) 276, 302, 393, 711, 825, 938, 966
DpnII GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
DraI TTTAAA 1 cut(s) 849
Eco130I CCWWGG 2 cut(s) 119, 424
Eco147I AGGCCT 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 887
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoT14I CCWWGG 2 cut(s) 119, 424
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 119, 424
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 7 cut(s) 8, 238, 383, 404, 483, 521, 916
FalI AAGNNNNNCTT 2 cut(s) 669, 701
FaqI GGGAC 1 cut(s) 824
FatI CATG 7 cut(s) 4, 234, 379, 400, 479, 517, 912
FbaI TGATCA 2 cut(s) 823, 936
Fnu4HI GCNGC 4 cut(s) 324, 327, 410, 960
FokI GGATG 4 cut(s) 472, 518, 812, 929
Fsp4HI GCNGC 4 cut(s) 324, 327, 410, 960
FspBI CTAG 3 cut(s) 207, 222, 696
GluI GCNGC 4 cut(s) 324, 327, 410, 960
HaeIII GGCC 1 cut(s) 88
HgaI GACGC 1 cut(s) 602
Hin1II CATG 7 cut(s) 8, 238, 383, 404, 483, 521, 916
HindIII AAGCTT 2 cut(s) 881, 949
HinfI GANTC 3 cut(s) 621, 757, 860
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 620, 739, 772, 799
Hpy188III TCNNGA 4 cut(s) 395, 696, 784, 827
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 5 cut(s) 179, 219, 496, 850, 953
HpyCH4III ACNGT 2 cut(s) 593, 928
HpyCH4V TGCA 8 cut(s) 4, 16, 323, 409, 485, 646, 689, 876
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 94, 103, 293, 909
HpyF3I CTNAG 2 cut(s) 433, 455
Hsp92II CATG 7 cut(s) 8, 238, 383, 404, 483, 521, 916
Ksp22I TGATCA 2 cut(s) 823, 936
Kzo9I GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
LmnI GCTCC 2 cut(s) 476, 909
LpnPI CCDG 9 cut(s) 21, 102, 110, 269, 398, 446, 502, 618, 756
Lsp1109I GCAGC 4 cut(s) 313, 335, 421, 971
LweI GCATC 1 cut(s) 494
MaeI CTAG 3 cut(s) 207, 222, 696
MaeIII GTNAC 2 cut(s) 436, 554
MalI GATC 7 cut(s) 276, 302, 393, 711, 825, 938, 966
MboI GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
MboII GAAGA 4 cut(s) 251, 617, 888, 962
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 3 cut(s) 108, 249, 312
MluCI AATT 3 cut(s) 173, 346, 404
MmeI TCCRAC 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 146, 578, 848
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 326, 962
MwoI GCNNNNNNNGC 5 cut(s) 85, 94, 103, 293, 909
NdeII GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
NlaIII CATG 7 cut(s) 8, 238, 383, 404, 483, 521, 916
NmuCI GTSAC 1 cut(s) 436
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 383, 483, 521
NspV TTCGAA 1 cut(s) 946
PceI AGGCCT 1 cut(s) 88
PciI ACATGT 2 cut(s) 379, 517
PfeI GAWTC 3 cut(s) 621, 757, 860
PkrI GCNGC 4 cut(s) 325, 328, 411, 961
PscI ACATGT 2 cut(s) 379, 517
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 274
PvuII CAGCTG 2 cut(s) 326, 962
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 3 cut(s) 146, 578, 848
SatI GCNGC 4 cut(s) 324, 327, 410, 960
Sau3AI GATC 7 cut(s) 274, 300, 391, 709, 823, 936, 964
SduI GDGCHC 3 cut(s) 108, 249, 312
SfaNI GCATC 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 946
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 3 cut(s) 173, 346, 404
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 655
SspMI CTAG 3 cut(s) 207, 222, 696
StuI AGGCCT 1 cut(s) 88
StyI CCWWGG 2 cut(s) 119, 424
TaaI ACNGT 2 cut(s) 593, 928
TaqI TCGA 3 cut(s) 303, 624, 946
TasI AATT 3 cut(s) 173, 346, 404
TfiI GAWTC 3 cut(s) 621, 757, 860
Tru1I TTAA 3 cut(s) 146, 578, 848
Tru9I TTAA 3 cut(s) 146, 578, 848
TscAI CASTG 5 cut(s) 478, 496, 637, 840, 870
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 4 cut(s) 323, 326, 409, 959
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 5 cut(s) 21, 121, 223, 380, 417
TspGWI ACGGA 2 cut(s) 327, 963
TspRI CASTG 5 cut(s) 478, 496, 637, 840, 870
XagI CCTNNNNNAGG 1 cut(s) 458
XapI RAATTY 2 cut(s) 173, 346
XbaI TCTAGA 1 cut(s) 695
XceI RCATGY 3 cut(s) 383, 483, 521
XspI CTAG 3 cut(s) 207, 222, 696
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.