Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018206

Physical Location & Seq

Genomic Coordinates Forward (+)

365567 .. 368040

Gene Structure 2474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGTAGACTTATTATTACAAGTTCTTCTATGGAGTTTCTATCTCCTCTCTCTTGTTCTACACCTTTTTGAAGACCTGAAAAAATTAGCCTTTTCCATAGCTCTAACTCTCAACTCTTCTCCTTCAGCATCTCCTTTGTCACGGTATCTCTCTTGGGTTGGGTCTCTTTTTGCGACAATTCAGAGCATTTACCATCACACCCAAGGCCAGATCAGGTCGAATGTAAAAAGGCGGGTTTTTGAGCAGCATGGTGAAGAAAACTATGAAGCAAAGAATTTGGCACATACCATAAGCTGCCAAGACAGTAACAGTAAGATGAAAGAAAAGAATGAAGATAAAAAAGGTATGCATGGAATATTGCATAGTTCACAAAAGAAGTCTGGTCTTTCGGGTAATAGAGGGAGTGCTATCAATAGTAAGTTGCGAGTGAGGCCTGCGAAGCTGTTTGTGCCGGATTTTTGTCCAAGGCAGGAGTTCATTGAAATGGGACTAAAGAAGTTGAAAGAGGACAAAAAGGAATTTGAGGTGGAAGGGAGGGATTTCTGCTTGGCAAGTAAGAAAGGCGCTAGAAGGGAGTTCATGGAAGATGGGCACAGAGAAATGGTTGATATAATGGGAGATCCCAAGCAGGCATTTTTTGCTGTGATCGATGGGCACGGAGGTTGTGCAGCTGCTGATTATGCAGCTGAAAATTTAGGGAAGAACATTATGAAAGAGCTTGAACATGTTGGAGAGGATCAAGAACATGAATTGCAGCAGGCTATTCGCCAAGGCTACTCAGTCACAGACAAGGGCTTCCTCAGTCAGGGTGTGAGCAGTGGAGCATGTGCAGCCAGTGTGGTGTTGAAGGATGGAGTGCTACATGTAGCAAATTTAGGAGATTGCAGAGTAGTTTTGAGTAACAAAGGAGTAGCACATGTATTAACAAAAGACCACCGTTTGAGTAGTGAAGATGAGCGTCTCCGAATCGAAAACACCGGTGGCTTTGTGCAACATTGCCGCAACGGAGTTTGGAGACTTCAAGGCTCACTTGCAGTTTCTAGAGCAATTGGGGATCAACATTTGAAAGATTGGGTCATTTCCGAACCAGAAACTAAAACGATTCCTCTAACTTCAGATTGCGAGTTCTTGCTAATGGCTTCGGATGGCTTGTGGGACAAGGTAAGCAATGCAATAACGAGCATGAATCCTCATGTTTATATTTCTGTGCTAATGTTCGATCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032543 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140053 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon Lyase_aromatic tRNA-synt_His

Protein Analysis

409

Amino Acids

45.64

Weight (kDa)

6.79

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	185 - 390	2.1e-49	Protein phosphatase 2C
PP2C_2	PF13672	207 - 390	4.1e-06	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018206)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251221
rosa_laevigata	RLG00000015473
rosa_multiflora	Rmu_sc0004077.1_g000002
rosa_roxburghii	Rroxscaffold_7G00216910
rosa_rugosa	Rorug05G0500800
rosa_samantha	Rh6AG010200 Rh6BG001800 Rh6CG007200 Rh6DG007700
rosa_wichuraiana	Rw6G001000 Rw6G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	232, 1000
AclWI	GGATC	3 cut(s)	614, 744, 1062
AcsI	RAATTY	4 cut(s)	274, 518, 691, 871
AcuI	CTGAAG	2 cut(s)	108, 1098
AfiI	CCNNNNNNNGG	1 cut(s)	805
AflIII	ACRYGT	3 cut(s)	724, 862, 916
AgeI	ACCGGT	1 cut(s)	977
AgsI	TTSAA	7 cut(s)	71, 482, 502, 722, 847, 1022, 1066
AluBI	AGCT	6 cut(s)	101, 294, 442, 671, 686, 718
AluI	AGCT	6 cut(s)	101, 294, 442, 671, 686, 718
Alw26I	GTCTC	3 cut(s)	168, 965, 1009
AlwI	GGATC	3 cut(s)	614, 744, 1062
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	2 cut(s)	205, 431
ApeKI	GCWGC	7 cut(s)	244, 294, 668, 671, 683, 754, 830
ApoI	RAATTY	4 cut(s)	274, 518, 691, 871
AsiGI	ACCGGT	1 cut(s)	977
AspLEI	GCGC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	263
BaeGI	GKGCMC	2 cut(s)	594, 657
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	7 cut(s)	256, 281, 658, 680, 695, 766, 842
BccI	CCATC	5 cut(s)	201, 581, 644, 845, 1139
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BcoDI	GTCTC	3 cut(s)	168, 965, 1009
BfaI	CTAG	2 cut(s)	567, 1041
BfoI	RGCGCY	1 cut(s)	567
BisI	GCNGC	8 cut(s)	245, 295, 669, 672, 684, 755, 831, 1000
BlsI	GCNGC	8 cut(s)	246, 296, 670, 673, 685, 756, 832, 1001
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	78
Bsa29I	ATCGAT	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	202, 464, 769
BsaWI	WCCGGW	1 cut(s)	977
Bsc4I	CCNNNNNNNGG	1 cut(s)	805
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	1 cut(s)	834
Bse3DI	GCAATG	2 cut(s)	994, 1174
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	202, 464, 769
BseGI	GGATG	2 cut(s)	856, 1150
BseLI	CCNNNNNNNGG	1 cut(s)	805
BseMI	GCAATG	2 cut(s)	994, 1174
BseMII	CTCAG	2 cut(s)	792, 814
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	2 cut(s)	594, 657
BseXI	GCAGC	7 cut(s)	256, 281, 658, 680, 695, 766, 842
BsgI	GTGCAG	2 cut(s)	687, 849
BshFI	GGCC	2 cut(s)	207, 433
BshTI	ACCGGT	1 cut(s)	977
BshVI	ATCGAT	1 cut(s)	648
BsiSI	CCGG	2 cut(s)	452, 978
BslFI	GGGAC	2 cut(s)	501, 1169
BslI	CCNNNNNNNGG	1 cut(s)	805
BsmAI	GTCTC	3 cut(s)	168, 965, 1009
BsmBI	CGTCTC	1 cut(s)	965
BsmFI	GGGAC	2 cut(s)	501, 1169
BsnI	GGCC	2 cut(s)	207, 433
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	594, 657
Bsp143I	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
BspACI	CCGC	2 cut(s)	232, 1000
BspANI	GGCC	2 cut(s)	207, 433
BspCNI	CTCAG	2 cut(s)	791, 813
BspDI	ATCGAT	1 cut(s)	648
BspPI	GGATC	3 cut(s)	614, 744, 1062
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	994, 1174
BsrFI	RCCGGY	1 cut(s)	977
BsrI	ACTGG	1 cut(s)	834
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	3 cut(s)	202, 464, 769
BssMI	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
BssT1I	CCWWGG	3 cut(s)	202, 464, 769
Bst4CI	ACNGT	4 cut(s)	144, 305, 311, 938
Bst6I	CTCTTC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	3 cut(s)	435, 630, 759
BstDEI	CTNAG	2 cut(s)	778, 800
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstF5I	GGATG	2 cut(s)	856, 1150
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	566
BstKTI	GATC	6 cut(s)	213, 622, 648, 739, 1057, 1222
BstMAI	GTCTC	3 cut(s)	168, 965, 1009
BstMBI	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
BstMWI	GCNNNNNNNGC	6 cut(s)	430, 439, 448, 638, 680, 830
BstNSI	RCATGY	4 cut(s)	728, 828, 866, 920
BstSLI	GKGCMC	2 cut(s)	594, 657
BstV1I	GCAGC	7 cut(s)	256, 281, 658, 680, 695, 766, 842
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	207, 433
BsuTUI	ATCGAT	1 cut(s)	648
BtsCI	GGATG	2 cut(s)	856, 1150
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	2 cut(s)	823, 841
Cac8I	GCNNGC	3 cut(s)	435, 630, 759
CaiI	CAGNNNCTG	1 cut(s)	674
CfoI	GCGC	1 cut(s)	566
Cfr10I	RCCGGY	1 cut(s)	977
ClaI	ATCGAT	1 cut(s)	648
CseI	GACGC	1 cut(s)	947
CspAI	ACCGGT	1 cut(s)	977
DdeI	CTNAG	2 cut(s)	778, 800
DpnI	GATC	6 cut(s)	212, 621, 647, 738, 1056, 1221
DpnII	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	3 cut(s)	202, 464, 769
Eco147I	AGGCCT	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	168
Eco57I	CTGAAG	2 cut(s)	108, 1098
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoT14I	CCWWGG	3 cut(s)	202, 464, 769
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	3 cut(s)	202, 464, 769
Esp3I	CGTCTC	1 cut(s)	965
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FaqI	GGGAC	2 cut(s)	501, 1169
FauI	CCCGC	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	8 cut(s)	245, 295, 669, 672, 684, 755, 831, 1000
FokI	GGATG	2 cut(s)	863, 1157
Fsp4HI	GCNGC	8 cut(s)	245, 295, 669, 672, 684, 755, 831, 1000
FspBI	CTAG	2 cut(s)	567, 1041
GlaI	GCGC	1 cut(s)	565
GluI	GCNGC	8 cut(s)	245, 295, 669, 672, 684, 755, 831, 1000
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	207, 433
HapII	CCGG	2 cut(s)	452, 978
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	564
HinP1I	GCGC	1 cut(s)	564
HinfI	GANTC	3 cut(s)	966, 1102, 1186
HpaII	CCGG	2 cut(s)	452, 978
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	2 cut(s)	7, 368
Hpy188I	TCNGA	5 cut(s)	183, 965, 1084, 1117, 1144
Hpy188III	TCNNGA	2 cut(s)	740, 1041
Hpy8I	GTNNAC	2 cut(s)	7, 368
HpyAV	CCTTC	4 cut(s)	132, 524, 564, 841
HpyCH4III	ACNGT	4 cut(s)	144, 305, 311, 938
HpyF10VI	GCNNNNNNNGC	6 cut(s)	430, 439, 448, 638, 680, 830
HpyF3I	CTNAG	2 cut(s)	778, 800
HspAI	GCGC	1 cut(s)	564
Kzo9I	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	7 cut(s)	256, 281, 658, 680, 695, 766, 842
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	567, 1041
MaeIII	GTNAC	4 cut(s)	138, 305, 781, 899
MalI	GATC	6 cut(s)	212, 621, 647, 738, 1056, 1221
MboI	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
MboII	GAAGA	8 cut(s)	17, 83, 108, 266, 344, 596, 712, 962
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	594, 657
MluCI	AATT	8 cut(s)	83, 177, 274, 518, 691, 749, 871, 1047
MmeI	TCCRAC	1 cut(s)	709
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	2 cut(s)	923, 1228
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	2 cut(s)	671, 686
MspI	CCGG	2 cut(s)	452, 978
MunI	CAATTG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	6 cut(s)	430, 439, 448, 638, 680, 830
NdeII	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
NmuCI	GTSAC	2 cut(s)	138, 781
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	4 cut(s)	728, 828, 866, 920
PceI	AGGCCT	1 cut(s)	433
PciI	ACATGT	3 cut(s)	724, 862, 916
PfeI	GAWTC	3 cut(s)	966, 1102, 1186
PinAI	ACCGGT	1 cut(s)	977
PkrI	GCNGC	8 cut(s)	246, 296, 670, 673, 685, 756, 832, 1001
PscI	ACATGT	3 cut(s)	724, 862, 916
PstNI	CAGNNNCTG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	2 cut(s)	671, 686
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	923, 1228
SatI	GCNGC	8 cut(s)	245, 295, 669, 672, 684, 755, 831, 1000
Sau3AI	GATC	6 cut(s)	210, 619, 645, 736, 1054, 1219
SduI	GDGCHC	2 cut(s)	594, 657
SfaNI	GCATC	1 cut(s)	137
SgrAI	CRCCGGYG	1 cut(s)	977
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	8 cut(s)	83, 177, 274, 518, 691, 749, 871, 1047
SseBI	AGGCCT	1 cut(s)	433
SsiI	CCGC	2 cut(s)	232, 1000
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	2 cut(s)	567, 1041
StuI	AGGCCT	1 cut(s)	433
StyI	CCWWGG	3 cut(s)	202, 464, 769
TaaI	ACNGT	4 cut(s)	144, 305, 311, 938
TaqI	TCGA	4 cut(s)	218, 648, 969, 1218
TasI	AATT	8 cut(s)	83, 177, 274, 518, 691, 749, 871, 1047
TauI	GCSGC	1 cut(s)	1002
TfiI	GAWTC	3 cut(s)	966, 1102, 1186
Tru1I	TTAA	2 cut(s)	923, 1228
Tru9I	TTAA	2 cut(s)	923, 1228
TscAI	CASTG	2 cut(s)	823, 841
TseFI	GTSAC	2 cut(s)	138, 781
TseI	GCWGC	7 cut(s)	244, 294, 668, 671, 683, 754, 830
Tsp45I	GTSAC	2 cut(s)	138, 781
TspDTI	ATGAA	8 cut(s)	279, 332, 345, 466, 568, 725, 762, 1199
TspGWI	ACGGA	2 cut(s)	672, 1020
TspRI	CASTG	2 cut(s)	823, 841
XagI	CCTNNNNNAGG	1 cut(s)	803
XapI	RAATTY	4 cut(s)	274, 518, 691, 871
XbaI	TCTAGA	1 cut(s)	1040
XceI	RCATGY	4 cut(s)	728, 828, 866, 920
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	567, 1041
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.