Rroxscaffold_7G00217250
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012009
Physical Location & Seq
Reverse (-)
67734714 .. 67743931
9218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217250.1

Sequence Viewer

Length: 2769 bp
ATGGAGGCGATCGAAGAGTTGTTGCAACTGTCAGACTCCATGCGCCAAGGCCAGGCCGTCCTCGCCGACGAAGACGTTGACGAAAACTCTCCCGCCTCCTCTCGCCGCTCCTCAACTTTCCTCAACGTCGTCGCTCTCGGCAATGTTGGTGCCGGTAAATCAGCTGTTTTGAACAGCTTAATTGGGCATCCTGTTTTGCCGACTGGTGAGAATGGTGCTACTCGAGCTCCAATCAGCATTGATTTACAGAGGGATGGTTCATTGAGCAGCAAATCGATAATACTGCAGATTGACAATAAGTCCCAGCAAGTTTCTGCAAGTGCTTTACGGCATTCTTTGCAAGATAGACTGAGTAAGAGTTCTTCAGGCAGAACCCGAGATGAAATTTACTTGAAACTACGGACAAGTACAGCCCCTCCCCTCAAATTGATTGATTTACCCGGGCTTGATCAACGGACTGTGGATGAGTCTATGCTAAGTGAATATGCAGAGCACAATGATGCAATTTTGCTGGTTATAATACCTGCATCACAAGCACCTGAAGTTGCTTCCTCTAAAGCCCTCAGAGCTGTCAAGGAATATGATGGAGATGGTACAAGAACTGTTGGAGTAATCAGTAAGATAGACCAAGCCGCGTCAGATCCGAAAGCACTTGCTGCAGTCCAGGCTCTGCTTTTAAATCAGGGGCCATCAAGAGCATCTGATATTCCCTGGGTTGCTCTAATAGGTCAATCAGTTTCAATAGCTTCCGCACAGTCTGGCTCTGAGAATTCTTTGGAAACTGCTTGGAGGGCTGAAAGTGAAAGTCTTAAATCCATTCTGACCGGTGCTCCTCAAAGTAAGCTAGGCAGAATTGCGCTAGTGGATGCTTTGGCCCAGCAAATTCGCAGTCGCATGAAAATCCGCCTTCCAAACCTCCTTTCTGGGTTACAAGGGAAGTCTCAAATAGTTCAGGATGAGTTGGTAAAGCTTGGTGCATCCATGGTACAGAGTGCTGAAGGTACTAGATCTCTTGCTCTGGAGCTTTGTCGTGAATTTGAGGATAAGTTTCTCCTACACATTACATCTGGTGAGGGCTCTGGTTGGAAAATTGTTGCAAGTTTTGAAGGAAATTTTCCCAATAGAATAAAGCAACTACCATTGGATCGACATTTTGATATCAACAATGTGAAGAGGATAGTGTTGGAAGCAGATGGTTATCAGCCTTATCTCATATCTCCTGAAAAAGGTTTGAGGTCATTAATAAAAGGTGTCTTAGAGCTTGCGAAGGAACCATCACGTCTTTGTGTGGATGAGGTACACCGTGTCCTGGTAGACATAGTGTCTGCTGCTGCAAATGCTACTCCAGGTCTTGGAAGATACCCTCCTTTCAAGAGGGAGGTTGTGGCCATTGCAACTGGTGCATTAGATGTGTTCAAGACTGATGCAAAGAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCTTTTGTGCCTCCTCAACATTTCATTCGCTTGGTACAGAGGAGGATGGAGAGGCAGCGTAGAGAGGAAGAAGTCAAAACTCGATCCTCGAGAAAAGGACAAGAGGCAGAGCAATCAGTAATGAACAGGGCAAGTAGTCCTCAAACAGGGGGTCAGCAATCTGGTGGAACCCTGAAATCGTTGAAGGATAAATTTAGCAAGGAGGAGAAAGAAGTCCCAGAAGCATCTGGTTTGAAGACCGCAGGTCCTGAAGGGGAAATAACAGCAGGGTTCTTATATAAAAAGAGTGCCAAAAGTAATGAGTGGAACAAGCGATGGTTTGTTCTGAATGAGAAGACTGGGAAGGAATGTAATATTGAAGAGATTGAAGAGGAAGAACCTGCTCCTCCACCAAAGAGTTCAAAGGATAAGAAGGCGAATGGGCCAGAAAAAGCACCTAGTCTTGCATTTAAGTTTACTAGCAAGGTTCCGTACAAAACTGTTCTGAAAGCACATAGTGCCGTTGTGTTGAAAGCTGAGACTGTGGCGGACAAGGTTGAGTGGATAAATAAGATTTCAAAGGTTATCCAACCTTCTAAAGGAGCACCGAGGGGTGCACCATCTGATGGTGGTCCTACTATGCGACAGAGTCTTTCTGATGGTTCGCTTGATACTATGACTCGAAGACCTGCTGACCCGGAAGAAGAACTCCGGTGGATGTCTCAAGAAGTTAGAGGTTACGTTGAAGCTGTTTTGAATAGTTTGGCTGCTAATGTCCCTAAGGCAGTTGTTCTTTGCCAAGTCGAAAAAGCCAAGGAAGACATGCTAAATCAGTTATATAGCTCTATCAGGCTGGATAGGTGTCTTGATATTATTTTCACTGATGGATTATTCGATTTTATTCCTGTGTATAGTGCTCAAAGCACAGCGAAGATTGAAGAGCTGCTTCAAGAGGATGGTAATGTAAAGAGACGAAGAGAGAAATACCAGAAACAGTCCTCTCTCCTTTCCAAGCTAACACGCCAACTCAGCATTCATGACAACCGAGCGGCTGCTGCCTCTGGCTGGTCCAATGGTGGTGCAACTGAAAGCAGCCCAAAAACTAGTAGCTCCTCAGGTGATGACTGGAGATCTGCATTTGATGCTGCTGCCAACGGTCCAGTTGACCGTTCATTATCTAGATCTTCATCCAATGGCCATAGTCGACACTATAGCGATCCCGCACAAAATGGTGATGTGAGTGCTGGTCCAAACTCTGGCAGCCGACGTACTCCTAATCGATTGCCACCTCCACCACCTGGGTCTTCAGGGAGCAGATACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

922

Amino Acids

100.2

Weight (kDa)

8.91

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 43 - 207 7.2e-32 Dynamin family
Dynamin_M PF01031 258 - 495 5.6e-22 Dynamin central region
GED PF02212 716 - 767 1.8e-06 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10290 AT1G59610
fragaria_vesca FvH4_2g00460 FvH4_2g00460
malus_domestica MD05G1001600.v1.1 MD10G1002800.v1.1
prunus_persica Prupe.8G004400_v2.0.a1
pyrus_communis pycom05g00170 pycom10g00220
rosa_chinensis RchiOBHm_Chr6g0250411
rosa_laevigata RLG00000015541
rosa_multiflora Rmu_sc0001209.1_g000036
rosa_roxburghii Rroxscaffold_7G00217250
rosa_rugosa Rorug05G0496400 Rorug05G0496400
rosa_samantha Rh6AG005800 Rh6DG003800
rosa_wichuraiana Rw6G000640 Rw6G000710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc36I ACCTGC 4 cut(s) 532, 1697, 1852, 2140
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 4 cut(s) 1352, 2069, 2699, 2741
AccBSI CCGCTC 2 cut(s) 108, 2492
AccI GTMKAC 2 cut(s) 1314, 2647
AccII CGCG 1 cut(s) 635
AciI CCGC 9 cut(s) 93, 106, 633, 750, 904, 1704, 1991, 2492, 2664
AclWI GGATC 4 cut(s) 635, 1152, 1542, 2654
AcoI YGGCCR 2 cut(s) 1386, 2638
AcsI RAATTY 6 cut(s) 384, 769, 882, 1034, 1111, 1655
AcuI CTGAAG 5 cut(s) 348, 561, 1017, 1734, 2733
AdeI CACNNNGTG 1 cut(s) 1961
AfaI GTAC 8 cut(s) 409, 595, 987, 1003, 1299, 1500, 1937, 2713
AgeI ACCGGT 1 cut(s) 824
AhdI GACNNNNNGTC 3 cut(s) 298, 1321, 1707
AhlI ACTAGT 2 cut(s) 1447, 2546
AjiI CACGTC 1 cut(s) 1280
AjnI CCWGG 6 cut(s) 51, 663, 710, 1308, 1345, 2740
AjuI GAANNNNNNNTTGG 4 cut(s) 904, 936, 2460, 2492
Alw21I GWGCWC 6 cut(s) 229, 495, 832, 2050, 2062, 2362
Alw26I GTCTC 4 cut(s) 945, 1976, 2169, 2407
Alw44I GTGCAC 1 cut(s) 2058
AlwI GGATC 4 cut(s) 635, 1152, 1542, 2654
AlwNI CAGNNNCTG 2 cut(s) 670, 1712
Ama87I CYCGRG 4 cut(s) 222, 375, 440, 1552
AoxI GGCC 7 cut(s) 49, 54, 686, 873, 1386, 1886, 2638
ApaLI GTGCAC 1 cut(s) 2058
ApoI RAATTY 6 cut(s) 384, 769, 882, 1034, 1111, 1655
ArsI GACNNNNNNTTYG 4 cut(s) 874, 906, 1600, 1632
AseI ATTAAT 1 cut(s) 1241
AsiGI ACCGGT 1 cut(s) 824
AspLEI GCGC 2 cut(s) 45, 859
AspS9I GGNCC 8 cut(s) 686, 874, 1709, 1886, 2075, 2511, 2600, 2690
AsuC2I CCSGG 3 cut(s) 441, 442, 2141
AsuHPI GGTGA 4 cut(s) 218, 1082, 2573, 2687
AvaI CYCGRG 4 cut(s) 222, 375, 440, 1552
AvaII GGWCC 5 cut(s) 1709, 2075, 2511, 2600, 2690
AxyI CCTNAGG 2 cut(s) 2223, 2557
BaeGI GKGCMC 1 cut(s) 2062
BalI TGGCCA 2 cut(s) 1388, 2640
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 229, 1079
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BbsI GAAGAC 6 cut(s) 78, 1706, 1805, 2134, 2268, 2739
Bbv12I GWGCWC 6 cut(s) 229, 495, 832, 2050, 2062, 2362
BceAI ACGGC 3 cut(s) 41, 344, 1949
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 6 cut(s) 53, 665, 712, 1310, 1347, 2742
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 3 cut(s) 441, 442, 2141
BcoDI GTCTC 4 cut(s) 945, 1976, 2169, 2407
BcuI ACTAGT 2 cut(s) 1447, 2546
BfaI CTAG 8 cut(s) 845, 860, 1005, 1448, 1902, 1923, 2547, 2622
BfmI CTRYAG 3 cut(s) 284, 657, 2653
BfuAI ACCTGC 4 cut(s) 532, 1697, 1852, 2140
BglII AGATCT 3 cut(s) 1007, 2573, 2624
Bme1390I CCNGG 9 cut(s) 53, 441, 442, 665, 712, 1310, 1347, 2141, 2742
Bme18I GGWCC 5 cut(s) 1709, 2075, 2511, 2600, 2690
BmeRI GACNNNNNGTC 3 cut(s) 298, 1321, 1707
BmeT110I CYCGRG 4 cut(s) 222, 375, 440, 1552
BmgBI CACGTC 1 cut(s) 1280
BmgT120I GGNCC 8 cut(s) 686, 874, 1709, 1886, 2075, 2511, 2600, 2690
BmiI GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1932
BmrFI CCNGG 9 cut(s) 53, 441, 442, 665, 712, 1310, 1347, 2141, 2742
BmrI ACTGGG 1 cut(s) 1812
BmsI GCATC 9 cut(s) 196, 490, 536, 707, 856, 986, 1414, 1697, 2575
BmuI ACTGGG 1 cut(s) 1812
BpiI GAAGAC 6 cut(s) 78, 1706, 1805, 2134, 2268, 2739
BpmI CTGGAG 3 cut(s) 1040, 1329, 2590
BpuEI CTTGAG 1 cut(s) 2151
BpuMI CCSGG 3 cut(s) 441, 442, 2141
Bsa29I ATCGAT 2 cut(s) 275, 2722
BsaBI GATNNNNATC 2 cut(s) 1197, 2629
BsaJI CCNNGG 8 cut(s) 46, 440, 710, 711, 981, 2051, 2256, 2741
BsaWI WCCGGW 2 cut(s) 824, 2154
BsaXI ACNNNNNCTCC 6 cut(s) 211, 241, 400, 430, 814, 844
Bse118I RCCGGY 2 cut(s) 152, 824
Bse1I ACTGG 5 cut(s) 208, 1402, 1807, 2573, 2603
Bse21I CCTNAGG 2 cut(s) 2223, 2557
Bse3DI GCAATG 2 cut(s) 148, 1389
Bse8I GATNNNNATC 2 cut(s) 1197, 2629
BseBI CCWGG 6 cut(s) 53, 665, 712, 1310, 1347, 2742
BseCI ATCGAT 2 cut(s) 275, 2722
BseDI CCNNGG 8 cut(s) 46, 440, 710, 711, 981, 2051, 2256, 2741
BseJI GATNNNNATC 2 cut(s) 1197, 2629
BseMI GCAATG 2 cut(s) 148, 1389
BseMII CTCAG 6 cut(s) 341, 577, 756, 1971, 2485, 2571
BseNI ACTGG 5 cut(s) 208, 1402, 1807, 2573, 2603
BseRI GAGGAG 8 cut(s) 88, 100, 822, 1467, 1519, 1682, 1839, 2545
BseSI GKGCMC 1 cut(s) 2062
BseYI CCCAGC 2 cut(s) 303, 876
Bsh1236I CGCG 1 cut(s) 635
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 7 cut(s) 51, 56, 688, 875, 1388, 1888, 2640
BshNI GGYRCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 824
BshVI ATCGAT 2 cut(s) 275, 2722
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 6 cut(s) 229, 495, 832, 2050, 2062, 2362
BsiHKCI CYCGRG 4 cut(s) 222, 375, 440, 1552
BsiSI CCGG 5 cut(s) 153, 441, 825, 2141, 2155
BslFI GGGAC 3 cut(s) 286, 1664, 2204
BsmAI GTCTC 4 cut(s) 945, 1976, 2169, 2407
BsmBI CGTCTC 1 cut(s) 2407
BsmFI GGGAC 3 cut(s) 286, 1664, 2204
BsmI GAATGC 2 cut(s) 331, 2475
BsnI GGCC 7 cut(s) 51, 56, 688, 875, 1388, 1888, 2640
BsoBI CYCGRG 4 cut(s) 222, 375, 440, 1552
Bsp1286I GDGCHC 7 cut(s) 229, 495, 832, 1079, 2050, 2062, 2362
Bsp143I GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
Bsp19I CCATGG 1 cut(s) 981
BspACI CCGC 9 cut(s) 93, 106, 633, 750, 904, 1704, 1991, 2492, 2664
BspANI GGCC 7 cut(s) 51, 56, 688, 875, 1388, 1888, 2640
BspCNI CTCAG 6 cut(s) 342, 576, 757, 1972, 2484, 2570
BspDI ATCGAT 2 cut(s) 275, 2722
BspFNI CGCG 1 cut(s) 635
BspHI TCATGA 1 cut(s) 2479
BspLI GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1932
BspMAI CTGCAG 2 cut(s) 288, 661
BspMI ACCTGC 4 cut(s) 532, 1697, 1852, 2140
BspPI GGATC 4 cut(s) 635, 1152, 1542, 2654
BspQI GCTCTTC 1 cut(s) 2376
BspT107I GGYRCC 1 cut(s) 149
BsrBI CCGCTC 2 cut(s) 108, 2492
BsrDI GCAATG 2 cut(s) 148, 1389
BsrFI RCCGGY 2 cut(s) 152, 824
BsrI ACTGG 5 cut(s) 208, 1402, 1807, 2573, 2603
BssAI RCCGGY 2 cut(s) 152, 824
BssECI CCNNGG 8 cut(s) 46, 440, 710, 711, 981, 2051, 2256, 2741
BssMI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
BssT1I CCWWGG 3 cut(s) 46, 981, 2256
Bst2UI CCWGG 6 cut(s) 53, 665, 712, 1310, 1347, 2742
Bst6I CTCTTC 6 cut(s) 9, 1166, 1818, 1827, 2376, 2413
BstAPI GCANNNNNTGC 5 cut(s) 337, 656, 1400, 1961, 2585
BstC8I GCNNGC 2 cut(s) 1263, 1464
BstDEI CTNAG 9 cut(s) 350, 476, 563, 765, 1255, 1980, 2223, 2471, 2557
BstDSI CCRYGG 1 cut(s) 981
BstENI CCTNNNNNAGG 3 cut(s) 1224, 1608, 2040
BstFNI CGCG 1 cut(s) 635
BstHHI GCGC 2 cut(s) 45, 859
BstKTI GATC 9 cut(s) 12, 451, 643, 1010, 1147, 1550, 2576, 2627, 2662
BstMAI GTCTC 4 cut(s) 945, 1976, 2169, 2407
BstMBI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
BstMCI CGRYCG 1 cut(s) 12
BstNI CCWGG 6 cut(s) 53, 665, 712, 1310, 1347, 2742
BstNSI RCATGY 1 cut(s) 2269
BstSCI CCNGG 9 cut(s) 51, 439, 440, 663, 710, 1308, 1345, 2139, 2740
BstSFI CTRYAG 3 cut(s) 284, 657, 2653
BstSLI GKGCMC 1 cut(s) 2062
BstUI CGCG 1 cut(s) 635
BstV2I GAAGAC 6 cut(s) 78, 1706, 1805, 2134, 2268, 2739
BstX2I RGATCY 4 cut(s) 640, 1007, 2573, 2624
BstYI RGATCY 4 cut(s) 640, 1007, 2573, 2624
Bsu15I ATCGAT 2 cut(s) 275, 2722
Bsu36I CCTNAGG 2 cut(s) 2223, 2557
BsuRI GGCC 7 cut(s) 51, 56, 688, 875, 1388, 1888, 2640
BsuTUI ATCGAT 2 cut(s) 275, 2722
BtgI CCRYGG 1 cut(s) 981
BtgZI GCGATG 1 cut(s) 1792
BtrI CACGTC 1 cut(s) 1280
BtsIMutI CAGTG 1 cut(s) 2322
BveI ACCTGC 4 cut(s) 532, 1697, 1852, 2140
Cac8I GCNNGC 2 cut(s) 1263, 1464
CaiI CAGNNNCTG 2 cut(s) 670, 1712
CciI TCATGA 1 cut(s) 2479
CfoI GCGC 2 cut(s) 45, 859
Cfr10I RCCGGY 2 cut(s) 152, 824
Cfr13I GGNCC 8 cut(s) 686, 874, 1709, 1886, 2075, 2511, 2600, 2690
Cfr9I CCCGGG 1 cut(s) 440
ClaI ATCGAT 2 cut(s) 275, 2722
CseI GACGC 1 cut(s) 624
Csp6I GTAC 8 cut(s) 408, 594, 986, 1002, 1298, 1499, 1936, 2712
CspAI ACCGGT 1 cut(s) 824
CviAII CATG 5 cut(s) 40, 895, 982, 2266, 2480
CviQI GTAC 8 cut(s) 408, 594, 986, 1002, 1298, 1499, 1936, 2712
DdeI CTNAG 9 cut(s) 350, 476, 563, 765, 1255, 1980, 2223, 2471, 2557
DpnI GATC 9 cut(s) 11, 450, 642, 1009, 1146, 1549, 2575, 2626, 2661
DpnII GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
DraI TTTAAA 1 cut(s) 678
DraIII CACNNNGTG 1 cut(s) 1961
DriI GACNNNNNGTC 3 cut(s) 298, 1321, 1707
EaeI YGGCCR 2 cut(s) 1386, 2638
Eam1104I CTCTTC 6 cut(s) 9, 1166, 1818, 1827, 2376, 2413
Eam1105I GACNNNNNGTC 3 cut(s) 298, 1321, 1707
EarI CTCTTC 6 cut(s) 9, 1166, 1818, 1827, 2376, 2413
EciI GGCGGA 2 cut(s) 893, 2006
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 46, 981, 2256
Eco24I GRGCYC 2 cut(s) 229, 1079
Eco32I GATATC 1 cut(s) 1159
Eco47I GGWCC 5 cut(s) 1709, 2075, 2511, 2600, 2690
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 5 cut(s) 348, 561, 1017, 1734, 2733
Eco81I CCTNAGG 2 cut(s) 2223, 2557
Eco88I CYCGRG 4 cut(s) 222, 375, 440, 1552
EcoICRI GAGCTC 1 cut(s) 227
EcoNI CCTNNNNNAGG 3 cut(s) 1224, 1608, 2040
EcoO109I RGGNCCY 1 cut(s) 1709
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 6 cut(s) 51, 663, 710, 1308, 1345, 2740
EcoRV GATATC 1 cut(s) 1159
EcoT14I CCWWGG 3 cut(s) 46, 981, 2256
EcoT38I GRGCYC 2 cut(s) 229, 1079
ErhI CCWWGG 3 cut(s) 46, 981, 2256
Esp3I CGTCTC 1 cut(s) 2407
FaeI CATG 5 cut(s) 43, 898, 985, 2269, 2483
FalI AAGNNNNNCTT 2 cut(s) 2373, 2405
FaqI GGGAC 3 cut(s) 286, 1664, 2204
FatI CATG 5 cut(s) 39, 894, 981, 2265, 2479
FauI CCCGC 2 cut(s) 100, 2671
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 1314, 2647
FriOI GRGCYC 2 cut(s) 229, 1079
FspBI CTAG 8 cut(s) 845, 860, 1005, 1448, 1902, 1923, 2547, 2622
GlaI GCGC 2 cut(s) 44, 858
GsaI CCCAGC 2 cut(s) 307, 880
GsuI CTGGAG 3 cut(s) 1040, 1329, 2590
HaeIII GGCC 7 cut(s) 51, 56, 688, 875, 1388, 1888, 2640
HapII CCGG 5 cut(s) 153, 441, 825, 2141, 2155
HgaI GACGC 1 cut(s) 624
HhaI GCGC 2 cut(s) 45, 859
Hin1II CATG 5 cut(s) 43, 898, 985, 2269, 2483
Hin6I GCGC 2 cut(s) 43, 857
HinP1I GCGC 2 cut(s) 43, 857
HincII GTYRAC 3 cut(s) 79, 2608, 2648
HindII GTYRAC 3 cut(s) 79, 2608, 2648
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 4 cut(s) 35, 467, 2092, 2122
HpaII CCGG 5 cut(s) 153, 441, 825, 2141, 2155
HphI GGTGA 4 cut(s) 218, 1082, 2573, 2687
Hpy166II GTNNAC 7 cut(s) 79, 1300, 1315, 1920, 2060, 2608, 2648
Hpy8I GTNNAC 7 cut(s) 79, 1300, 1315, 1920, 2060, 2608, 2648
Hpy99I CGWCG 4 cut(s) 71, 131, 134, 2712
HpyAV CCTTC 9 cut(s) 917, 992, 1100, 1261, 1642, 1709, 1801, 1870, 2046
HpyCH4IV ACGT 5 cut(s) 75, 126, 1279, 2184, 2710
HpyF3I CTNAG 9 cut(s) 350, 476, 563, 765, 1255, 1980, 2223, 2471, 2557
HpySE526I ACGT 5 cut(s) 75, 126, 1279, 2184, 2710
Hsp92II CATG 5 cut(s) 43, 898, 985, 2269, 2483
HspAI GCGC 2 cut(s) 43, 857
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
LguI GCTCTTC 1 cut(s) 2376
LmnI GCTCC 9 cut(s) 113, 232, 835, 1021, 1459, 1852, 2045, 2558, 2754
LweI GCATC 9 cut(s) 196, 490, 536, 707, 856, 986, 1414, 1697, 2575
MaeI CTAG 8 cut(s) 845, 860, 1005, 1448, 1902, 1923, 2547, 2622
MaeII ACGT 5 cut(s) 75, 126, 1279, 2184, 2710
MaeIII GTNAC 2 cut(s) 927, 2180
MalI GATC 9 cut(s) 11, 450, 642, 1009, 1146, 1549, 2575, 2626, 2661
MbiI CCGCTC 2 cut(s) 108, 2492
MboI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
MflI RGATCY 4 cut(s) 640, 1007, 2573, 2624
MhlI GDGCHC 7 cut(s) 229, 495, 832, 1079, 2050, 2062, 2362
MlsI TGGCCA 2 cut(s) 1388, 2640
MluNI TGGCCA 2 cut(s) 1388, 2640
MlyI GAGTC 4 cut(s) 29, 476, 2101, 2116
MmeI TCCRAC 4 cut(s) 586, 1064, 1164, 2056
Mox20I TGGCCA 2 cut(s) 1388, 2640
MscI TGGCCA 2 cut(s) 1388, 2640
MseI TTAA 5 cut(s) 179, 677, 810, 1241, 1914
MslI CAYNNNNRTG 1 cut(s) 498
Msp20I TGGCCA 2 cut(s) 1388, 2640
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 5 cut(s) 153, 441, 825, 2141, 2155
MspR9I CCNGG 9 cut(s) 53, 441, 442, 665, 712, 1310, 1347, 2141, 2742
Mva1269I GAATGC 2 cut(s) 331, 2475
MvaI CCWGG 6 cut(s) 53, 665, 712, 1310, 1347, 2742
MvnI CGCG 1 cut(s) 635
NciI CCSGG 3 cut(s) 441, 442, 2141
NcoI CCATGG 1 cut(s) 981
NdeII GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
NlaIII CATG 5 cut(s) 43, 898, 985, 2269, 2483
NlaIV GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1932
NmeAIII GCCGAG 1 cut(s) 117
NspI RCATGY 1 cut(s) 2269
PaeR7I CTCGAG 2 cut(s) 222, 1552
PagI TCATGA 1 cut(s) 2479
PasI CCCWGGG 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 2376
PctI GAATGC 2 cut(s) 331, 2475
PflFI GACNNNGTC 1 cut(s) 2091
PflMI CCANNNNNTGG 4 cut(s) 1352, 2069, 2699, 2741
PinAI ACCGGT 1 cut(s) 824
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 4 cut(s) 29, 475, 2100, 2116
PpsI GAGTC 4 cut(s) 29, 475, 2100, 2116
PpuMI RGGWCCY 1 cut(s) 1709
PshBI ATTAAT 1 cut(s) 1241
PsiI TTATAA 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 1709
Psp6I CCWGG 6 cut(s) 51, 663, 710, 1308, 1345, 2740
PspFI CCCAGC 2 cut(s) 303, 876
PspGI CCWGG 6 cut(s) 51, 663, 710, 1308, 1345, 2740
PspN4I GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1932
PspPI GGNCC 8 cut(s) 686, 874, 1709, 1886, 2075, 2511, 2600, 2690
PspPPI RGGWCCY 1 cut(s) 1709
PspXI VCTCGAGB 1 cut(s) 222
PstI CTGCAG 2 cut(s) 288, 661
PstNI CAGNNNCTG 2 cut(s) 670, 1712
PsuI RGATCY 4 cut(s) 640, 1007, 2573, 2624
PsyI GACNNNGTC 1 cut(s) 2091
PvuI CGATCG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 8 cut(s) 409, 595, 987, 1003, 1299, 1500, 1937, 2713
RsaNI GTAC 8 cut(s) 408, 594, 986, 1002, 1298, 1499, 1936, 2712
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 229
SalI GTCGAC 1 cut(s) 2646
SapI GCTCTTC 1 cut(s) 2376
SaqAI TTAA 5 cut(s) 179, 677, 810, 1241, 1914
Sau3AI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2573, 2624, 2659
Sau96I GGNCC 8 cut(s) 686, 874, 1709, 1886, 2075, 2511, 2600, 2690
SchI GAGTC 4 cut(s) 29, 476, 2101, 2116
ScrFI CCNGG 9 cut(s) 53, 441, 442, 665, 712, 1310, 1347, 2141, 2742
SduI GDGCHC 7 cut(s) 229, 495, 832, 1079, 2050, 2062, 2362
SfaNI GCATC 9 cut(s) 196, 490, 536, 707, 856, 986, 1414, 1697, 2575
SfcI CTRYAG 3 cut(s) 284, 657, 2653
Sfr274I CTCGAG 2 cut(s) 222, 1552
SinI GGWCC 5 cut(s) 1709, 2075, 2511, 2600, 2690
SlaI CTCGAG 2 cut(s) 222, 1552
SmaI CCCGGG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 3 cut(s) 222, 1552, 2166
SmoI CTYRAG 3 cut(s) 222, 1552, 2166
SpeI ACTAGT 2 cut(s) 1447, 2546
SsiI CCGC 9 cut(s) 93, 106, 633, 750, 904, 1704, 1991, 2492, 2664
SspI AATATT 1 cut(s) 1819
SspMI CTAG 8 cut(s) 845, 860, 1005, 1448, 1902, 1923, 2547, 2622
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 9 cut(s) 51, 439, 440, 663, 710, 1308, 1345, 2139, 2740
StyI CCWWGG 3 cut(s) 46, 981, 2256
TaiI ACGT 5 cut(s) 78, 129, 1282, 2187, 2713
TatI WGTACW 1 cut(s) 407
TauI GCSGC 3 cut(s) 108, 635, 2495
Tru1I TTAA 5 cut(s) 179, 677, 810, 1241, 1914
Tru9I TTAA 5 cut(s) 179, 677, 810, 1241, 1914
TscAI CASTG 1 cut(s) 2329
TspDTI ATGAA 8 cut(s) 249, 396, 911, 1477, 1601, 2468, 2604, 2619
TspGWI ACGGA 3 cut(s) 415, 469, 1923
TspMI CCCGGG 1 cut(s) 440
TspRI CASTG 1 cut(s) 2329
Tth111I GACNNNGTC 1 cut(s) 2091
Van91I CCANNNNNTGG 4 cut(s) 1352, 2069, 2699, 2741
VneI GTGCAC 1 cut(s) 2058
VpaK11BI GGWCC 5 cut(s) 1709, 2075, 2511, 2600, 2690
VspI ATTAAT 1 cut(s) 1241
XagI CCTNNNNNAGG 3 cut(s) 1224, 1608, 2040
XapI RAATTY 6 cut(s) 384, 769, 882, 1034, 1111, 1655
XbaI TCTAGA 1 cut(s) 2621
XceI RCATGY 1 cut(s) 2269
XhoI CTCGAG 2 cut(s) 222, 1552
XmaI CCCGGG 1 cut(s) 440
XmiI GTMKAC 2 cut(s) 1314, 2647
XspI CTAG 8 cut(s) 845, 860, 1005, 1448, 1902, 1923, 2547, 2622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.