Rorug05G0496400
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001775
Physical Location & Seq
Forward (+)
67817738 .. 67821519
3782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0496400.1

Sequence Viewer

Length: 1119 bp
ATGTCGTCTGATTTCAAGTTAGAGGGAGTTAAAGACCATGAAATTGAGGACCCAGAAGTTGGTTCTCCAAATGGAATGCATAATATCCTTGCGGAGCGAAGAACTATGACTCTCAGTGACAGGTTGTTTAGAGGGAATCGAGCAGGGCATGGTGACACCATCTCTTTTAGTCCGAGTGACGGAAATGAAAAGCATGGACATGGGTCAGCAAAGAAATCTGGACCTCTATTGTCTGGGACAGCATACTGCATTTCATCGTGCAGCATGATATTGCTGAATAAAGTTGTTCTATCAAGTTACAACTTCAATGCAGGAGTATCATTGATGTTTTATCAAAATTTGATAAGTACTGTAATTGTTGTATTCTTGGGCTTCTCTGGAGTTGTTACTGTGGAAAAGCTCAATTGGAAACTGATTAAGGTCTGGATCCCTGTTAATGTAATCTTCATCGGCATGCTTGTATCAGGCATGTATAGTTTGAAATACGTAAATATTGCAATGGTGACCATTCTGAAGAATGTGACAAATATTTTAACAGCACTGGGAGAATTATATATGTTCCGGAAACACCAGAATCAGAAAGTGTGGACTGCCATGTTTCTGATGATTATCTCTGCTATCAGCAGTGGCATTACAGATATCTCCTTTGATACTGTAGGTTATGCTTGGCAATTTTCAAATTGCATACTAACAGCAAGCTACTCACTCACTCTACGGCGAGTCATGGATGAAGCAAAAAAGTACACAAGATCCGGATCTCTAAATGAAGTTTCAATGGTCTTGCTGAATAATTTGCTATCTCTACCTTTTGCTGCCTTCTTGATTATTCTGTTTGACGAATGGGAATATGTGATTAATGCGGATGTAGTTAAGTTGCCAGTGTTTTGGGTGGTTGCAACAGCTAGTGGATTGCTTGGACTTTCTATTAGCTTTACTTCCATGTGGTTTCTACATCAAACTGGCCCAACCACCTATAGTCTGGTGGGTTCCTTAAACAAGATTCCTCTCTCTCTTGCCGGTTTAGTCCTGTTCAGGGTGCCTCTCAGTCTACCAAACCTCTTCAGCATACTATTTGGTTTATTTGCTGGAATATTCTTCGCCAGGGCAAAAATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000266 GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006892 GO:0006896 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007034 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0022622 GO:0030054 GO:0030135 GO:0030136 GO:0030139 GO:0030154 GO:0030276 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032878 GO:0032989 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045334 GO:0046907 GO:0048193 GO:0048285 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0065007 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090627 GO:0097305 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0099402 GO:1901700 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED PH

Protein Analysis

372

Amino Acids

41.13

Weight (kDa)

9.11

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 81 - 358 1.3e-11 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 1 cut(s) 1048
AccIII TCCGGA 2 cut(s) 561, 752
AciI CCGC 2 cut(s) 92, 860
AclWI GGATC 4 cut(s) 421, 434, 744, 763
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 2 cut(s) 533, 1045
AfaI GTAC 2 cut(s) 349, 743
AfiI CCNNNNNNNGG 3 cut(s) 59, 179, 1033
AgsI TTSAA 5 cut(s) 16, 307, 481, 678, 774
AjnI CCWGG 1 cut(s) 1100
AluBI AGCT 4 cut(s) 400, 699, 902, 930
AluI AGCT 4 cut(s) 400, 699, 902, 930
AlwI GGATC 4 cut(s) 421, 434, 744, 763
Aor13HI TCCGGA 2 cut(s) 561, 752
AoxI GGCC 1 cut(s) 961
ApeKI GCWGC 2 cut(s) 261, 812
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 1 cut(s) 855
AspS9I GGNCC 3 cut(s) 49, 221, 962
AsuHPI GGTGA 2 cut(s) 164, 514
AvaII GGWCC 2 cut(s) 49, 221
BamHI GGATCC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 1036
BbvI GCAGC 2 cut(s) 273, 799
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 731
BciT130I CCWGG 1 cut(s) 1102
BfaI CTAG 1 cut(s) 903
BfmI CTRYAG 2 cut(s) 654, 973
BisI GCNGC 2 cut(s) 262, 813
BlsI GCNGC 2 cut(s) 263, 814
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 1102
Bme18I GGWCC 2 cut(s) 49, 221
BmgT120I GGNCC 3 cut(s) 49, 221, 962
BmiI GGNNCC 4 cut(s) 51, 428, 988, 1038
BmrFI CCNGG 1 cut(s) 1102
BmrI ACTGGG 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 399
BsaAI YACGTR 1 cut(s) 487
BsaBI GATNNNNATC 2 cut(s) 608, 754
BsaJI CCNNGG 1 cut(s) 1101
BsaWI WCCGGW 2 cut(s) 561, 752
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 179, 1033
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 3 cut(s) 546, 878, 964
Bse3DI GCAATG 1 cut(s) 504
Bse8I GATNNNNATC 2 cut(s) 608, 754
BseAI TCCGGA 2 cut(s) 561, 752
BseBI CCWGG 1 cut(s) 1102
BseDI CCNNGG 1 cut(s) 1101
BseGI GGATG 2 cut(s) 733, 868
BseJI GATNNNNATC 2 cut(s) 608, 754
BseLI CCNNNNNNNGG 3 cut(s) 59, 179, 1033
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 127, 1057
BseNI ACTGG 3 cut(s) 546, 878, 964
BseXI GCAGC 2 cut(s) 273, 799
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 963
BshNI GGYRCC 1 cut(s) 1036
BsiSI CCGG 3 cut(s) 562, 753, 1017
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 59, 179, 1033
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 1 cut(s) 963
Bsp13I TCCGGA 2 cut(s) 561, 752
Bsp143I GATC 3 cut(s) 426, 749, 755
BspACI CCGC 2 cut(s) 92, 860
BspANI GGCC 1 cut(s) 963
BspCNI CTCAG 2 cut(s) 126, 1056
BspEI TCCGGA 2 cut(s) 561, 752
BspLI GGNNCC 4 cut(s) 51, 428, 988, 1038
BspPI GGATC 4 cut(s) 421, 434, 744, 763
BspT107I GGYRCC 1 cut(s) 1036
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 3 cut(s) 546, 878, 964
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 1 cut(s) 1101
BssMI GATC 3 cut(s) 426, 749, 755
Bst2UI CCWGG 1 cut(s) 1102
Bst4CI ACNGT 3 cut(s) 352, 391, 655
Bst6I CTCTTC 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 455, 697
BstDEI CTNAG 2 cut(s) 113, 1043
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 2 cut(s) 733, 868
BstKTI GATC 3 cut(s) 429, 752, 758
BstMBI GATC 3 cut(s) 426, 749, 755
BstNI CCWGG 1 cut(s) 1102
BstNSI RCATGY 2 cut(s) 457, 472
BstPAI GACNNNNGTC 1 cut(s) 202
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 1100
BstSFI CTRYAG 2 cut(s) 654, 973
BstSNI TACGTA 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 273, 799
BstX2I RGATCY 3 cut(s) 426, 749, 755
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 3 cut(s) 426, 749, 755
BsuRI GGCC 1 cut(s) 963
BtsCI GGATG 2 cut(s) 733, 868
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 4 cut(s) 121, 539, 631, 885
Cac8I GCNNGC 2 cut(s) 455, 697
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 3 cut(s) 49, 221, 962
Csp6I GTAC 2 cut(s) 348, 742
CviJI RGCY 6 cut(s) 372, 400, 699, 902, 930, 963
CviKI_1 RGCY 6 cut(s) 372, 400, 699, 902, 930, 963
CviQI GTAC 2 cut(s) 348, 742
DdeI CTNAG 2 cut(s) 113, 1043
DpnI GATC 3 cut(s) 428, 751, 757
DpnII GATC 3 cut(s) 426, 749, 755
Eam1104I CTCTTC 1 cut(s) 1064
EarI CTCTTC 1 cut(s) 1064
Eco105I TACGTA 1 cut(s) 487
Eco32I GATATC 1 cut(s) 640
Eco47I GGWCC 2 cut(s) 49, 221
Eco57I CTGAAG 2 cut(s) 533, 1045
Eco91I GGTNACC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 1100
EcoRV GATATC 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 81
FaqI GGGAC 1 cut(s) 250
FblI GTMKAC 1 cut(s) 1048
Fnu4HI GCNGC 2 cut(s) 262, 813
FokI GGATG 2 cut(s) 740, 875
Fsp4HI GCNGC 2 cut(s) 262, 813
FspBI CTAG 1 cut(s) 903
GluI GCNGC 2 cut(s) 262, 813
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 1 cut(s) 963
HapII CCGG 3 cut(s) 562, 753, 1017
HinfI GANTC 5 cut(s) 109, 136, 574, 720, 1000
HpaII CCGG 3 cut(s) 562, 753, 1017
HphI GGTGA 2 cut(s) 164, 514
Hpy166II GTNNAC 3 cut(s) 588, 744, 1049
Hpy188I TCNGA 5 cut(s) 10, 174, 513, 579, 603
Hpy188III TCNNGA 6 cut(s) 219, 378, 424, 562, 753, 820
Hpy8I GTNNAC 3 cut(s) 588, 744, 1049
HpyAV CCTTC 1 cut(s) 826
HpyCH4III ACNGT 3 cut(s) 352, 391, 655
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 7 cut(s) 79, 249, 261, 311, 497, 684, 896
HpyF3I CTNAG 2 cut(s) 113, 1043
HpySE526I ACGT 1 cut(s) 486
Kpn2I TCCGGA 2 cut(s) 561, 752
Kzo9I GATC 3 cut(s) 426, 749, 755
LmnI GCTCC 1 cut(s) 94
Lsp1109I GCAGC 2 cut(s) 273, 799
MaeI CTAG 1 cut(s) 903
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 7 cut(s) 116, 152, 176, 296, 385, 502, 520
MalI GATC 3 cut(s) 428, 751, 757
MboI GATC 3 cut(s) 426, 749, 755
MboII GAAGA 5 cut(s) 111, 436, 526, 1051, 1087
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 3 cut(s) 426, 749, 755
MluCI AATT 8 cut(s) 42, 337, 354, 403, 548, 671, 679, 790
MlyI GAGTC 2 cut(s) 103, 729
MnlI CCTC 7 cut(s) 16, 40, 125, 234, 1014, 1050, 1067
Mph1103I ATGCAT 1 cut(s) 81
MroI TCCGGA 2 cut(s) 561, 752
MseI TTAA 7 cut(s) 30, 417, 435, 533, 855, 870, 992
MslI CAYNNNNRTG 2 cut(s) 198, 452
MspI CCGG 3 cut(s) 562, 753, 1017
MspR9I CCNGG 1 cut(s) 1102
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 1102
NdeII GATC 3 cut(s) 426, 749, 755
NlaIV GGNNCC 4 cut(s) 51, 428, 988, 1038
NmuCI GTSAC 5 cut(s) 116, 152, 176, 502, 520
NsiI ATGCAT 1 cut(s) 81
NspI RCATGY 2 cut(s) 457, 472
PaeI GCATGC 1 cut(s) 457
PctI GAATGC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 136, 574, 1000
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 2 cut(s) 263, 814
PleI GAGTC 2 cut(s) 103, 728
PpsI GAGTC 2 cut(s) 103, 728
Ppu21I YACGTR 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 49
PshAI GACNNNNGTC 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 1100
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 1100
PspN4I GGNNCC 4 cut(s) 51, 428, 988, 1038
PspPI GGNCC 3 cut(s) 49, 221, 962
PspPPI RGGWCCY 1 cut(s) 49
PsuI RGATCY 3 cut(s) 426, 749, 755
RsaI GTAC 2 cut(s) 349, 743
RsaNI GTAC 2 cut(s) 348, 742
RseI CAYNNNNRTG 2 cut(s) 198, 452
SaqAI TTAA 7 cut(s) 30, 417, 435, 533, 855, 870, 992
SatI GCNGC 2 cut(s) 262, 813
Sau3AI GATC 3 cut(s) 426, 749, 755
Sau96I GGNCC 3 cut(s) 49, 221, 962
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 2 cut(s) 103, 729
ScrFI CCNGG 1 cut(s) 1102
SfcI CTRYAG 2 cut(s) 654, 973
SinI GGWCC 2 cut(s) 49, 221
SmiMI CAYNNNNRTG 2 cut(s) 198, 452
SnaBI TACGTA 1 cut(s) 487
SphI GCATGC 1 cut(s) 457
Sse9I AATT 8 cut(s) 42, 337, 354, 403, 548, 671, 679, 790
SsiI CCGC 2 cut(s) 92, 860
SspI AATATT 3 cut(s) 493, 529, 1092
SspMI CTAG 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 1100
TaaI ACNGT 3 cut(s) 352, 391, 655
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 139
TasI AATT 8 cut(s) 42, 337, 354, 403, 548, 671, 679, 790
TatI WGTACW 2 cut(s) 347, 741
TfiI GAWTC 3 cut(s) 136, 574, 1000
Tru1I TTAA 7 cut(s) 30, 417, 435, 533, 855, 870, 992
Tru9I TTAA 7 cut(s) 30, 417, 435, 533, 855, 870, 992
TscAI CASTG 4 cut(s) 121, 546, 631, 885
TseFI GTSAC 5 cut(s) 116, 152, 176, 502, 520
TseI GCWGC 2 cut(s) 261, 812
Tsp45I GTSAC 5 cut(s) 116, 152, 176, 502, 520
TspDTI ATGAA 6 cut(s) 54, 201, 243, 436, 744, 780
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 4 cut(s) 121, 546, 631, 885
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 49, 221
VspI ATTAAT 1 cut(s) 855
XapI RAATTY 1 cut(s) 337
XceI RCATGY 2 cut(s) 457, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 1048
XspI CTAG 1 cut(s) 903
ZrmI AGTACT 1 cut(s) 349
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.