pycom16g08030

Nucleoredoxin

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
5299629 .. 5301235
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08030.3

Sequence Viewer

Length: 1206 bp
ATGGCTGACGGCGACGAACACGGCGTCACTCACGACCTCCTTTCTCTCCTTTCCTCCGCCGACAGAAACTTCCTCATCCGCAACAACGGCGACCAGGTTGAGATCAGTAGTTTGACCGGAAAGATTGTGGGGTTGTATTTCTCCGCCTCGTGGTGCGGCCCGTGCCTCCGGTTCACCCCAGACCTGGTGGAGGTTCACCAGGAATTGGCGGCCAAAGGCGACTTTGAAGTTGTGTTTATCTCTTCTGATAGAGATGAGGAATCGTTCACTGGATACTTCTCTAAAATGCCTTGGCTTTCGATTCCCTTTTCGGATTTGGAGACCCGGAAACGCCTCAAGGAGTTCTTCAAAGTCAGGGGGATTCCCAATCTTGTCATTATTGATGCCAATGGGAAGGTTTCTATTGATTATGGAACTAAAATTGTGAGGGACTACGGTGCCAATGGTTATCCGTTCACTGCGGAGAGGTTTGCAGAACTCGTTGAGATAGAAAAGGCAGAGGAGAAAGCTCAAACCCTGGAGTCAATTTTGATTTCCGGGGATCGAAATTTTGTCATTGGAAAAGATGGAACTGAGATCCCTGTGGCAGATCTAGTGGGGAAGAACATCCTCCTTTATTTCTCAGCTCACTGGTGCCCTCCATGCCGCTCCTTTCTGCCAACACTCGTTGAAGCCTACCACGAGATTAAGGCCAAGGACGATGCATTTGAAGTCATTTTCATCTCAAGTGACAGAGACCAAGACTCTTTTGATGAGTTTTTTGCTACAATGCCATGGCTTGCTCTTCCCTTTGGTGACTCAAGGAAAGCGTTCTTGAGTCGCAAATTCAAGGTCCAGGGCATCCCCATGCTCGTAGCAATCGGTCCTACTGGGCAAACCGTCACAAGAGAAGCAAGAAATCACATAGTGGCTCACGGGGCAAAAGCTTATCCTTTCACCGAAGAGCATCTGAAGGAGCTTCAAGCGGAATCTGAGGAGATGGCAAAGGGGTGGCCTGAGAAGTTGAAGAGTGCACTCCATGAGAAGCACGAGCTTGTGCTCTCGAAGCGCACAGTTTTTGTGTGCGATGGGTGCAGAAAACCGGGAGCGGTGTGGTCATTCTACTGTAAGGAGTGTGATTTCGATCTCCACCCGAAGTGCGCGTTCGAGGGAGATAAAAAGACCGAAAATGATGGCAAACAGGAAGGAGAGGAATCCAAAGAATGA

Protein Analysis

402

Amino Acids

45.16

Weight (kDa)

5.21

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 437, 633
AccB7I CCANNNNNTGG 1 cut(s) 205
AccBSI CCGCTC 2 cut(s) 648, 1088
AccII CGCG 1 cut(s) 1142
AciI CCGC 9 cut(s) 57, 79, 144, 156, 209, 461, 646, 965, 1088
AclWI GGATC 2 cut(s) 549, 571
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 2 cut(s) 547, 824
AcuI CTGAAG 1 cut(s) 971
AcyI GRCGYC 1 cut(s) 24
AdeI CACNNNGTG 1 cut(s) 907
AfiI CCNNNNNNNGG 4 cut(s) 150, 184, 190, 205
AgsI TTSAA 7 cut(s) 227, 349, 671, 710, 829, 962, 1006
AjnI CCWGG 5 cut(s) 93, 183, 198, 516, 834
AluBI AGCT 5 cut(s) 509, 626, 926, 958, 1033
AluI AGCT 5 cut(s) 509, 626, 926, 958, 1033
Alw21I GWGCWC 2 cut(s) 1015, 1041
Alw26I GTCTC 2 cut(s) 314, 729
Alw44I GTGCAC 1 cut(s) 1011
AlwI GGATC 2 cut(s) 549, 571
AoxI GGCC 4 cut(s) 157, 210, 690, 992
ApaLI GTGCAC 1 cut(s) 1011
ApoI RAATTY 2 cut(s) 547, 824
ArsI GACNNNNNNTTYG 6 cut(s) 9, 41, 689, 721, 816, 848
Asp700I GAANNNNTTC 1 cut(s) 809
AspLEI GCGC 2 cut(s) 1050, 1142
AspS9I GGNCC 3 cut(s) 158, 832, 863
AsuC2I CCSGG 3 cut(s) 325, 538, 1083
AsuHPI GGTGA 4 cut(s) 166, 188, 806, 928
AvaII GGWCC 2 cut(s) 832, 863
BaeGI GKGCMC 2 cut(s) 638, 1015
BanI GGYRCC 2 cut(s) 437, 633
BauI CACGAG 3 cut(s) 148, 680, 1028
Bbv12I GWGCWC 2 cut(s) 1015, 1041
BccI CCATC 4 cut(s) 560, 973, 1061, 1166
BceAI ACGGC 3 cut(s) 25, 37, 103
BciT130I CCWGG 5 cut(s) 95, 185, 200, 518, 836
BciVI GTATCC 1 cut(s) 266
BcnI CCSGG 3 cut(s) 325, 538, 1083
BcoDI GTCTC 2 cut(s) 314, 729
BfaI CTAG 1 cut(s) 593
BfuI GTATCC 1 cut(s) 266
BglII AGATCT 1 cut(s) 589
BisI GCNGC 3 cut(s) 157, 210, 646
BlsI GCNGC 3 cut(s) 158, 211, 647
Bme1390I CCNGG 8 cut(s) 95, 185, 200, 325, 518, 538, 836, 1083
Bme18I GGWCC 2 cut(s) 832, 863
BmgT120I GGNCC 3 cut(s) 158, 832, 863
BmiI GGNNCC 2 cut(s) 439, 635
BmrFI CCNGG 8 cut(s) 95, 185, 200, 325, 518, 538, 836, 1083
BmrI ACTGGG 1 cut(s) 879
BmsI GCATC 4 cut(s) 373, 691, 849, 955
BmuI ACTGGG 1 cut(s) 879
BpmI CTGGAG 1 cut(s) 539
BpuEI CTTGAG 4 cut(s) 320, 709, 784, 835
BpuMI CCSGG 3 cut(s) 325, 538, 1083
BsaBI GATNNNNATC 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 2 cut(s) 314, 729
BsaJI CCNNGG 6 cut(s) 290, 516, 537, 693, 773, 835
BsaWI WCCGGW 2 cut(s) 116, 168
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 184, 190, 205
Bse1I ACTGG 3 cut(s) 274, 635, 874
Bse8I GATNNNNATC 1 cut(s) 1122
BseBI CCWGG 5 cut(s) 95, 185, 200, 518, 836
BseDI CCNNGG 6 cut(s) 290, 516, 537, 693, 773, 835
BseGI GGATG 3 cut(s) 75, 606, 840
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 4 cut(s) 150, 184, 190, 205
BseMII CTCAG 4 cut(s) 564, 636, 963, 987
BseNI ACTGG 3 cut(s) 274, 635, 874
BseRI GAGGAG 2 cut(s) 515, 989
BseSI GKGCMC 2 cut(s) 638, 1015
BsgI GTGCAG 1 cut(s) 1093
Bsh1236I CGCG 1 cut(s) 1142
BshFI GGCC 4 cut(s) 159, 212, 692, 994
BshNI GGYRCC 2 cut(s) 437, 633
BsiHKAI GWGCWC 2 cut(s) 1015, 1041
BsiSI CCGG 5 cut(s) 117, 169, 325, 537, 1082
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 4 cut(s) 150, 184, 190, 205
BsmAI GTCTC 2 cut(s) 314, 729
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 4 cut(s) 159, 212, 692, 994
Bso31I GGTCTC 2 cut(s) 314, 729
Bsp1286I GDGCHC 3 cut(s) 638, 1015, 1041
Bsp143I GATC 5 cut(s) 102, 541, 576, 589, 1123
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 9 cut(s) 57, 79, 144, 156, 209, 461, 646, 965, 1088
BspANI GGCC 4 cut(s) 159, 212, 692, 994
BspCNI CTCAG 4 cut(s) 565, 635, 964, 988
BspFNI CGCG 1 cut(s) 1142
BspLI GGNNCC 2 cut(s) 439, 635
BspPI GGATC 2 cut(s) 549, 571
BspQI GCTCTTC 2 cut(s) 789, 936
BspT107I GGYRCC 2 cut(s) 437, 633
BspTNI GGTCTC 2 cut(s) 314, 729
BsrBI CCGCTC 2 cut(s) 648, 1088
BsrI ACTGG 3 cut(s) 274, 635, 874
BssECI CCNNGG 6 cut(s) 290, 516, 537, 693, 773, 835
BssMI GATC 5 cut(s) 102, 541, 576, 589, 1123
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 3 cut(s) 148, 680, 1028
BssT1I CCWWGG 3 cut(s) 290, 693, 773
Bst2BI CACGAG 3 cut(s) 148, 680, 1028
Bst2UI CCWGG 5 cut(s) 95, 185, 200, 518, 836
Bst4CI ACNGT 4 cut(s) 437, 880, 1054, 1106
Bst6I CTCTTC 4 cut(s) 247, 789, 936, 1001
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 4 cut(s) 573, 622, 972, 996
BstDSI CCRYGG 1 cut(s) 773
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 3 cut(s) 75, 606, 840
BstFNI CGCG 1 cut(s) 1142
BstHHI GCGC 2 cut(s) 1050, 1142
BstKTI GATC 5 cut(s) 105, 544, 579, 592, 1126
BstMAI GTCTC 2 cut(s) 314, 729
BstMBI GATC 5 cut(s) 102, 541, 576, 589, 1123
BstMWI GCNNNNNNNGC 6 cut(s) 87, 162, 642, 917, 1045, 1071
BstNI CCWGG 5 cut(s) 95, 185, 200, 518, 836
BstSCI CCNGG 8 cut(s) 93, 183, 198, 323, 516, 536, 834, 1081
BstSLI GKGCMC 2 cut(s) 638, 1015
BstUI CGCG 1 cut(s) 1142
BstX2I RGATCY 2 cut(s) 576, 589
BstYI RGATCY 2 cut(s) 576, 589
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 4 cut(s) 159, 212, 692, 994
BtgI CCRYGG 1 cut(s) 773
BtgZI GCGATG 1 cut(s) 1080
BtsCI GGATG 3 cut(s) 75, 606, 840
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 267, 456, 628
Cac8I GCNNGC 1 cut(s) 780
CfoI GCGC 2 cut(s) 1050, 1142
Cfr13I GGNCC 3 cut(s) 158, 832, 863
CseI GACGC 1 cut(s) 13
CsiI ACCWGGT 2 cut(s) 93, 183
CviAII CATG 4 cut(s) 642, 774, 847, 1019
DdeI CTNAG 4 cut(s) 573, 622, 972, 996
DpnI GATC 5 cut(s) 104, 543, 578, 591, 1125
DpnII GATC 5 cut(s) 102, 541, 576, 589, 1123
DraIII CACNNNGTG 1 cut(s) 907
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 4 cut(s) 247, 789, 936, 1001
EarI CTCTTC 4 cut(s) 247, 789, 936, 1001
EciI GGCGGA 2 cut(s) 46, 133
Eco130I CCWWGG 3 cut(s) 290, 693, 773
Eco31I GGTCTC 2 cut(s) 314, 729
Eco47I GGWCC 2 cut(s) 832, 863
Eco57I CTGAAG 1 cut(s) 971
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 5 cut(s) 93, 183, 198, 516, 834
EcoT14I CCWWGG 3 cut(s) 290, 693, 773
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 3 cut(s) 290, 693, 773
FaeI CATG 4 cut(s) 645, 777, 850, 1022
FaiI YATR 6 cut(s) 411, 643, 775, 848, 905, 1020
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 443
FatI CATG 4 cut(s) 641, 773, 846, 1018
Fnu4HI GCNGC 3 cut(s) 157, 210, 646
FokI GGATG 3 cut(s) 62, 593, 827
Fsp4HI GCNGC 3 cut(s) 157, 210, 646
FspBI CTAG 1 cut(s) 593
GlaI GCGC 2 cut(s) 1049, 1141
GluI GCNGC 3 cut(s) 157, 210, 646
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 4 cut(s) 159, 212, 692, 994
HapII CCGG 5 cut(s) 117, 169, 325, 537, 1082
HgaI GACGC 1 cut(s) 13
HhaI GCGC 2 cut(s) 1050, 1142
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 4 cut(s) 645, 777, 850, 1022
Hin6I GCGC 2 cut(s) 1048, 1140
HinP1I GCGC 2 cut(s) 1048, 1140
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 9 cut(s) 260, 301, 361, 521, 743, 797, 817, 968, 1193
HpaII CCGG 5 cut(s) 117, 169, 325, 537, 1082
HphI GGTGA 4 cut(s) 166, 188, 806, 928
Hpy166II GTNNAC 5 cut(s) 174, 196, 267, 456, 1013
Hpy188I TCNGA 4 cut(s) 247, 313, 951, 973
Hpy188III TCNNGA 3 cut(s) 32, 814, 1042
Hpy8I GTNNAC 5 cut(s) 174, 196, 267, 456, 1013
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 388, 946, 1178
HpyCH4III ACNGT 4 cut(s) 437, 880, 1054, 1106
HpyCH4V TGCA 4 cut(s) 473, 704, 1013, 1074
HpyF10VI GCNNNNNNNGC 6 cut(s) 87, 162, 642, 917, 1045, 1071
HpyF3I CTNAG 4 cut(s) 573, 622, 972, 996
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 4 cut(s) 645, 777, 850, 1022
HspAI GCGC 2 cut(s) 1048, 1140
Kzo9I GATC 5 cut(s) 102, 541, 576, 589, 1123
LguI GCTCTTC 2 cut(s) 789, 936
LmnI GCTCC 3 cut(s) 653, 955, 1085
LweI GCATC 4 cut(s) 373, 691, 849, 955
MabI ACCWGGT 2 cut(s) 93, 183
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 4 cut(s) 25, 728, 794, 880
MalI GATC 5 cut(s) 104, 543, 578, 591, 1125
MbiI CCGCTC 2 cut(s) 648, 1088
MboI GATC 5 cut(s) 102, 541, 576, 589, 1123
MboII GAAGA 6 cut(s) 234, 337, 613, 776, 953, 1018
MflI RGATCY 2 cut(s) 576, 589
MhlI GDGCHC 3 cut(s) 638, 1015, 1041
MluCI AATT 5 cut(s) 203, 420, 525, 547, 824
MlyI GAGTC 4 cut(s) 530, 737, 791, 826
Mph1103I ATGCAT 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 809
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 845
MspI CCGG 5 cut(s) 117, 169, 325, 537, 1082
MspR9I CCNGG 8 cut(s) 95, 185, 200, 325, 518, 538, 836, 1083
MvaI CCWGG 5 cut(s) 95, 185, 200, 518, 836
MvnI CGCG 1 cut(s) 1142
MwoI GCNNNNNNNGC 6 cut(s) 87, 162, 642, 917, 1045, 1071
NciI CCSGG 3 cut(s) 325, 538, 1083
NcoI CCATGG 1 cut(s) 773
NdeII GATC 5 cut(s) 102, 541, 576, 589, 1123
NlaIII CATG 4 cut(s) 645, 777, 850, 1022
NlaIV GGNNCC 2 cut(s) 439, 635
NmuCI GTSAC 4 cut(s) 25, 728, 794, 880
NsiI ATGCAT 1 cut(s) 706
PciSI GCTCTTC 2 cut(s) 789, 936
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 809
PfeI GAWTC 5 cut(s) 260, 301, 361, 968, 1193
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 3 cut(s) 158, 211, 647
PleI GAGTC 4 cut(s) 529, 737, 791, 825
PpsI GAGTC 4 cut(s) 529, 737, 791, 825
Psp6I CCWGG 5 cut(s) 93, 183, 198, 516, 834
PspGI CCWGG 5 cut(s) 93, 183, 198, 516, 834
PspN4I GGNNCC 2 cut(s) 439, 635
PspPI GGNCC 3 cut(s) 158, 832, 863
PsuI RGATCY 2 cut(s) 576, 589
RseI CAYNNNNRTG 1 cut(s) 845
SapI GCTCTTC 2 cut(s) 789, 936
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 3 cut(s) 157, 210, 646
Sau3AI GATC 5 cut(s) 102, 541, 576, 589, 1123
Sau96I GGNCC 3 cut(s) 158, 832, 863
SchI GAGTC 4 cut(s) 530, 737, 791, 826
ScrFI CCNGG 8 cut(s) 95, 185, 200, 325, 518, 538, 836, 1083
SduI GDGCHC 3 cut(s) 638, 1015, 1041
SexAI ACCWGGT 2 cut(s) 93, 183
SfaNI GCATC 4 cut(s) 373, 691, 849, 955
SinI GGWCC 2 cut(s) 832, 863
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 4 cut(s) 335, 724, 799, 814
SmoI CTYRAG 4 cut(s) 335, 724, 799, 814
Sse9I AATT 5 cut(s) 203, 420, 525, 547, 824
SsiI CCGC 9 cut(s) 57, 79, 144, 156, 209, 461, 646, 965, 1088
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 8 cut(s) 93, 183, 198, 323, 516, 536, 834, 1081
StyI CCWWGG 3 cut(s) 290, 693, 773
TaaI ACNGT 4 cut(s) 437, 880, 1054, 1106
TaqI TCGA 5 cut(s) 299, 544, 1043, 1122, 1146
TaqII GACCGA 2 cut(s) 851, 1178
TasI AATT 5 cut(s) 203, 420, 525, 547, 824
TauI GCSGC 3 cut(s) 159, 212, 648
TfiI GAWTC 5 cut(s) 260, 301, 361, 968, 1193
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 3 cut(s) 274, 463, 635
TseFI GTSAC 4 cut(s) 25, 728, 794, 880
Tsp45I GTSAC 4 cut(s) 25, 728, 794, 880
TspDTI ATGAA 1 cut(s) 709
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 3 cut(s) 274, 463, 635
Van91I CCANNNNNTGG 1 cut(s) 205
VneI GTGCAC 1 cut(s) 1011
VpaK11BI GGWCC 2 cut(s) 832, 863
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 547, 824
XmnI GAANNNNTTC 1 cut(s) 809
XspI CTAG 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.