Nucleoredoxin
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G70480 AT1G70480 |
| fragaria_vesca | FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 |
| malus_domestica | MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1 |
| prunus_persica | Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1 |
| pyrus_communis | pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050 |
| rosa_chinensis | RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421 |
| rosa_laevigata | RLG00000005898 RLG00000005899 RLG00000005900 |
| rosa_multiflora | Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270 |
| rosa_rugosa | Rorug05G0496400 Rorug05G0496500 |
| rosa_samantha | Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000 |
| rosa_wichuraiana | Rw4G034900 Rw4G034910 Rw4G034920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 437, 633 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 205 |
| AccBSI | CCGCTC | 2 cut(s) | 648, 1088 |
| AccII | CGCG | 1 cut(s) | 1142 |
| AciI | CCGC | 9 cut(s) | 57, 79, 144, 156, 209, 461, 646, 965, 1088 |
| AclWI | GGATC | 2 cut(s) | 549, 571 |
| AcoI | YGGCCR | 1 cut(s) | 210 |
| AcsI | RAATTY | 2 cut(s) | 547, 824 |
| AcuI | CTGAAG | 1 cut(s) | 971 |
| AcyI | GRCGYC | 1 cut(s) | 24 |
| AdeI | CACNNNGTG | 1 cut(s) | 907 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 184, 190, 205 |
| AgsI | TTSAA | 7 cut(s) | 227, 349, 671, 710, 829, 962, 1006 |
| AjnI | CCWGG | 5 cut(s) | 93, 183, 198, 516, 834 |
| AluBI | AGCT | 5 cut(s) | 509, 626, 926, 958, 1033 |
| AluI | AGCT | 5 cut(s) | 509, 626, 926, 958, 1033 |
| Alw21I | GWGCWC | 2 cut(s) | 1015, 1041 |
| Alw26I | GTCTC | 2 cut(s) | 314, 729 |
| Alw44I | GTGCAC | 1 cut(s) | 1011 |
| AlwI | GGATC | 2 cut(s) | 549, 571 |
| AoxI | GGCC | 4 cut(s) | 157, 210, 690, 992 |
| ApaLI | GTGCAC | 1 cut(s) | 1011 |
| ApoI | RAATTY | 2 cut(s) | 547, 824 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 9, 41, 689, 721, 816, 848 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 809 |
| AspLEI | GCGC | 2 cut(s) | 1050, 1142 |
| AspS9I | GGNCC | 3 cut(s) | 158, 832, 863 |
| AsuC2I | CCSGG | 3 cut(s) | 325, 538, 1083 |
| AsuHPI | GGTGA | 4 cut(s) | 166, 188, 806, 928 |
| AvaII | GGWCC | 2 cut(s) | 832, 863 |
| BaeGI | GKGCMC | 2 cut(s) | 638, 1015 |
| BanI | GGYRCC | 2 cut(s) | 437, 633 |
| BauI | CACGAG | 3 cut(s) | 148, 680, 1028 |
| Bbv12I | GWGCWC | 2 cut(s) | 1015, 1041 |
| BccI | CCATC | 4 cut(s) | 560, 973, 1061, 1166 |
| BceAI | ACGGC | 3 cut(s) | 25, 37, 103 |
| BciT130I | CCWGG | 5 cut(s) | 95, 185, 200, 518, 836 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BcnI | CCSGG | 3 cut(s) | 325, 538, 1083 |
| BcoDI | GTCTC | 2 cut(s) | 314, 729 |
| BfaI | CTAG | 1 cut(s) | 593 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BglII | AGATCT | 1 cut(s) | 589 |
| BisI | GCNGC | 3 cut(s) | 157, 210, 646 |
| BlsI | GCNGC | 3 cut(s) | 158, 211, 647 |
| Bme1390I | CCNGG | 8 cut(s) | 95, 185, 200, 325, 518, 538, 836, 1083 |
| Bme18I | GGWCC | 2 cut(s) | 832, 863 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 832, 863 |
| BmiI | GGNNCC | 2 cut(s) | 439, 635 |
| BmrFI | CCNGG | 8 cut(s) | 95, 185, 200, 325, 518, 538, 836, 1083 |
| BmrI | ACTGGG | 1 cut(s) | 879 |
| BmsI | GCATC | 4 cut(s) | 373, 691, 849, 955 |
| BmuI | ACTGGG | 1 cut(s) | 879 |
| BpmI | CTGGAG | 1 cut(s) | 539 |
| BpuEI | CTTGAG | 4 cut(s) | 320, 709, 784, 835 |
| BpuMI | CCSGG | 3 cut(s) | 325, 538, 1083 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1122 |
| BsaHI | GRCGYC | 1 cut(s) | 24 |
| BsaI | GGTCTC | 2 cut(s) | 314, 729 |
| BsaJI | CCNNGG | 6 cut(s) | 290, 516, 537, 693, 773, 835 |
| BsaWI | WCCGGW | 2 cut(s) | 116, 168 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 184, 190, 205 |
| Bse1I | ACTGG | 3 cut(s) | 274, 635, 874 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1122 |
| BseBI | CCWGG | 5 cut(s) | 95, 185, 200, 518, 836 |
| BseDI | CCNNGG | 6 cut(s) | 290, 516, 537, 693, 773, 835 |
| BseGI | GGATG | 3 cut(s) | 75, 606, 840 |
| BseJI | GATNNNNATC | 1 cut(s) | 1122 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 184, 190, 205 |
| BseMII | CTCAG | 4 cut(s) | 564, 636, 963, 987 |
| BseNI | ACTGG | 3 cut(s) | 274, 635, 874 |
| BseRI | GAGGAG | 2 cut(s) | 515, 989 |
| BseSI | GKGCMC | 2 cut(s) | 638, 1015 |
| BsgI | GTGCAG | 1 cut(s) | 1093 |
| Bsh1236I | CGCG | 1 cut(s) | 1142 |
| BshFI | GGCC | 4 cut(s) | 159, 212, 692, 994 |
| BshNI | GGYRCC | 2 cut(s) | 437, 633 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1015, 1041 |
| BsiSI | CCGG | 5 cut(s) | 117, 169, 325, 537, 1082 |
| BslFI | GGGAC | 1 cut(s) | 443 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 184, 190, 205 |
| BsmAI | GTCTC | 2 cut(s) | 314, 729 |
| BsmFI | GGGAC | 1 cut(s) | 443 |
| BsnI | GGCC | 4 cut(s) | 159, 212, 692, 994 |
| Bso31I | GGTCTC | 2 cut(s) | 314, 729 |
| Bsp1286I | GDGCHC | 3 cut(s) | 638, 1015, 1041 |
| Bsp143I | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| Bsp19I | CCATGG | 1 cut(s) | 773 |
| BspACI | CCGC | 9 cut(s) | 57, 79, 144, 156, 209, 461, 646, 965, 1088 |
| BspANI | GGCC | 4 cut(s) | 159, 212, 692, 994 |
| BspCNI | CTCAG | 4 cut(s) | 565, 635, 964, 988 |
| BspFNI | CGCG | 1 cut(s) | 1142 |
| BspLI | GGNNCC | 2 cut(s) | 439, 635 |
| BspPI | GGATC | 2 cut(s) | 549, 571 |
| BspQI | GCTCTTC | 2 cut(s) | 789, 936 |
| BspT107I | GGYRCC | 2 cut(s) | 437, 633 |
| BspTNI | GGTCTC | 2 cut(s) | 314, 729 |
| BsrBI | CCGCTC | 2 cut(s) | 648, 1088 |
| BsrI | ACTGG | 3 cut(s) | 274, 635, 874 |
| BssECI | CCNNGG | 6 cut(s) | 290, 516, 537, 693, 773, 835 |
| BssMI | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| BssNI | GRCGYC | 1 cut(s) | 24 |
| BssSI | CACGAG | 3 cut(s) | 148, 680, 1028 |
| BssT1I | CCWWGG | 3 cut(s) | 290, 693, 773 |
| Bst2BI | CACGAG | 3 cut(s) | 148, 680, 1028 |
| Bst2UI | CCWGG | 5 cut(s) | 95, 185, 200, 518, 836 |
| Bst4CI | ACNGT | 4 cut(s) | 437, 880, 1054, 1106 |
| Bst6I | CTCTTC | 4 cut(s) | 247, 789, 936, 1001 |
| BstACI | GRCGYC | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 1 cut(s) | 780 |
| BstDEI | CTNAG | 4 cut(s) | 573, 622, 972, 996 |
| BstDSI | CCRYGG | 1 cut(s) | 773 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 3 cut(s) | 75, 606, 840 |
| BstFNI | CGCG | 1 cut(s) | 1142 |
| BstHHI | GCGC | 2 cut(s) | 1050, 1142 |
| BstKTI | GATC | 5 cut(s) | 105, 544, 579, 592, 1126 |
| BstMAI | GTCTC | 2 cut(s) | 314, 729 |
| BstMBI | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 87, 162, 642, 917, 1045, 1071 |
| BstNI | CCWGG | 5 cut(s) | 95, 185, 200, 518, 836 |
| BstSCI | CCNGG | 8 cut(s) | 93, 183, 198, 323, 516, 536, 834, 1081 |
| BstSLI | GKGCMC | 2 cut(s) | 638, 1015 |
| BstUI | CGCG | 1 cut(s) | 1142 |
| BstX2I | RGATCY | 2 cut(s) | 576, 589 |
| BstYI | RGATCY | 2 cut(s) | 576, 589 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 4 cut(s) | 159, 212, 692, 994 |
| BtgI | CCRYGG | 1 cut(s) | 773 |
| BtgZI | GCGATG | 1 cut(s) | 1080 |
| BtsCI | GGATG | 3 cut(s) | 75, 606, 840 |
| BtsI | GCAGTG | 1 cut(s) | 456 |
| BtsIMutI | CAGTG | 3 cut(s) | 267, 456, 628 |
| Cac8I | GCNNGC | 1 cut(s) | 780 |
| CfoI | GCGC | 2 cut(s) | 1050, 1142 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 832, 863 |
| CseI | GACGC | 1 cut(s) | 13 |
| CsiI | ACCWGGT | 2 cut(s) | 93, 183 |
| CviAII | CATG | 4 cut(s) | 642, 774, 847, 1019 |
| DdeI | CTNAG | 4 cut(s) | 573, 622, 972, 996 |
| DpnI | GATC | 5 cut(s) | 104, 543, 578, 591, 1125 |
| DpnII | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| DraIII | CACNNNGTG | 1 cut(s) | 907 |
| EaeI | YGGCCR | 1 cut(s) | 210 |
| Eam1104I | CTCTTC | 4 cut(s) | 247, 789, 936, 1001 |
| EarI | CTCTTC | 4 cut(s) | 247, 789, 936, 1001 |
| EciI | GGCGGA | 2 cut(s) | 46, 133 |
| Eco130I | CCWWGG | 3 cut(s) | 290, 693, 773 |
| Eco31I | GGTCTC | 2 cut(s) | 314, 729 |
| Eco47I | GGWCC | 2 cut(s) | 832, 863 |
| Eco57I | CTGAAG | 1 cut(s) | 971 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 188 |
| EcoRII | CCWGG | 5 cut(s) | 93, 183, 198, 516, 834 |
| EcoT14I | CCWWGG | 3 cut(s) | 290, 693, 773 |
| EcoT22I | ATGCAT | 1 cut(s) | 706 |
| ErhI | CCWWGG | 3 cut(s) | 290, 693, 773 |
| FaeI | CATG | 4 cut(s) | 645, 777, 850, 1022 |
| FaiI | YATR | 6 cut(s) | 411, 643, 775, 848, 905, 1020 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 329, 361 |
| FaqI | GGGAC | 1 cut(s) | 443 |
| FatI | CATG | 4 cut(s) | 641, 773, 846, 1018 |
| Fnu4HI | GCNGC | 3 cut(s) | 157, 210, 646 |
| FokI | GGATG | 3 cut(s) | 62, 593, 827 |
| Fsp4HI | GCNGC | 3 cut(s) | 157, 210, 646 |
| FspBI | CTAG | 1 cut(s) | 593 |
| GlaI | GCGC | 2 cut(s) | 1049, 1141 |
| GluI | GCNGC | 3 cut(s) | 157, 210, 646 |
| GsuI | CTGGAG | 1 cut(s) | 539 |
| HaeIII | GGCC | 4 cut(s) | 159, 212, 692, 994 |
| HapII | CCGG | 5 cut(s) | 117, 169, 325, 537, 1082 |
| HgaI | GACGC | 1 cut(s) | 13 |
| HhaI | GCGC | 2 cut(s) | 1050, 1142 |
| Hin1I | GRCGYC | 1 cut(s) | 24 |
| Hin1II | CATG | 4 cut(s) | 645, 777, 850, 1022 |
| Hin6I | GCGC | 2 cut(s) | 1048, 1140 |
| HinP1I | GCGC | 2 cut(s) | 1048, 1140 |
| HindIII | AAGCTT | 1 cut(s) | 924 |
| HinfI | GANTC | 9 cut(s) | 260, 301, 361, 521, 743, 797, 817, 968, 1193 |
| HpaII | CCGG | 5 cut(s) | 117, 169, 325, 537, 1082 |
| HphI | GGTGA | 4 cut(s) | 166, 188, 806, 928 |
| Hpy166II | GTNNAC | 5 cut(s) | 174, 196, 267, 456, 1013 |
| Hpy188I | TCNGA | 4 cut(s) | 247, 313, 951, 973 |
| Hpy188III | TCNNGA | 3 cut(s) | 32, 814, 1042 |
| Hpy8I | GTNNAC | 5 cut(s) | 174, 196, 267, 456, 1013 |
| Hpy99I | CGWCG | 1 cut(s) | 17 |
| HpyAV | CCTTC | 3 cut(s) | 388, 946, 1178 |
| HpyCH4III | ACNGT | 4 cut(s) | 437, 880, 1054, 1106 |
| HpyCH4V | TGCA | 4 cut(s) | 473, 704, 1013, 1074 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 87, 162, 642, 917, 1045, 1071 |
| HpyF3I | CTNAG | 4 cut(s) | 573, 622, 972, 996 |
| Hsp92I | GRCGYC | 1 cut(s) | 24 |
| Hsp92II | CATG | 4 cut(s) | 645, 777, 850, 1022 |
| HspAI | GCGC | 2 cut(s) | 1048, 1140 |
| Kzo9I | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| LguI | GCTCTTC | 2 cut(s) | 789, 936 |
| LmnI | GCTCC | 3 cut(s) | 653, 955, 1085 |
| LweI | GCATC | 4 cut(s) | 373, 691, 849, 955 |
| MabI | ACCWGGT | 2 cut(s) | 93, 183 |
| MaeI | CTAG | 1 cut(s) | 593 |
| MaeIII | GTNAC | 4 cut(s) | 25, 728, 794, 880 |
| MalI | GATC | 5 cut(s) | 104, 543, 578, 591, 1125 |
| MbiI | CCGCTC | 2 cut(s) | 648, 1088 |
| MboI | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| MboII | GAAGA | 6 cut(s) | 234, 337, 613, 776, 953, 1018 |
| MflI | RGATCY | 2 cut(s) | 576, 589 |
| MhlI | GDGCHC | 3 cut(s) | 638, 1015, 1041 |
| MluCI | AATT | 5 cut(s) | 203, 420, 525, 547, 824 |
| MlyI | GAGTC | 4 cut(s) | 530, 737, 791, 826 |
| Mph1103I | ATGCAT | 1 cut(s) | 706 |
| MroXI | GAANNNNTTC | 1 cut(s) | 809 |
| MseI | TTAA | 1 cut(s) | 687 |
| MslI | CAYNNNNRTG | 1 cut(s) | 845 |
| MspI | CCGG | 5 cut(s) | 117, 169, 325, 537, 1082 |
| MspR9I | CCNGG | 8 cut(s) | 95, 185, 200, 325, 518, 538, 836, 1083 |
| MvaI | CCWGG | 5 cut(s) | 95, 185, 200, 518, 836 |
| MvnI | CGCG | 1 cut(s) | 1142 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 87, 162, 642, 917, 1045, 1071 |
| NciI | CCSGG | 3 cut(s) | 325, 538, 1083 |
| NcoI | CCATGG | 1 cut(s) | 773 |
| NdeII | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| NlaIII | CATG | 4 cut(s) | 645, 777, 850, 1022 |
| NlaIV | GGNNCC | 2 cut(s) | 439, 635 |
| NmuCI | GTSAC | 4 cut(s) | 25, 728, 794, 880 |
| NsiI | ATGCAT | 1 cut(s) | 706 |
| PciSI | GCTCTTC | 2 cut(s) | 789, 936 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 1 cut(s) | 809 |
| PfeI | GAWTC | 5 cut(s) | 260, 301, 361, 968, 1193 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 205 |
| PkrI | GCNGC | 3 cut(s) | 158, 211, 647 |
| PleI | GAGTC | 4 cut(s) | 529, 737, 791, 825 |
| PpsI | GAGTC | 4 cut(s) | 529, 737, 791, 825 |
| Psp6I | CCWGG | 5 cut(s) | 93, 183, 198, 516, 834 |
| PspGI | CCWGG | 5 cut(s) | 93, 183, 198, 516, 834 |
| PspN4I | GGNNCC | 2 cut(s) | 439, 635 |
| PspPI | GGNCC | 3 cut(s) | 158, 832, 863 |
| PsuI | RGATCY | 2 cut(s) | 576, 589 |
| RseI | CAYNNNNRTG | 1 cut(s) | 845 |
| SapI | GCTCTTC | 2 cut(s) | 789, 936 |
| SaqAI | TTAA | 1 cut(s) | 687 |
| SatI | GCNGC | 3 cut(s) | 157, 210, 646 |
| Sau3AI | GATC | 5 cut(s) | 102, 541, 576, 589, 1123 |
| Sau96I | GGNCC | 3 cut(s) | 158, 832, 863 |
| SchI | GAGTC | 4 cut(s) | 530, 737, 791, 826 |
| ScrFI | CCNGG | 8 cut(s) | 95, 185, 200, 325, 518, 538, 836, 1083 |
| SduI | GDGCHC | 3 cut(s) | 638, 1015, 1041 |
| SexAI | ACCWGGT | 2 cut(s) | 93, 183 |
| SfaNI | GCATC | 4 cut(s) | 373, 691, 849, 955 |
| SinI | GGWCC | 2 cut(s) | 832, 863 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 845 |
| SmlI | CTYRAG | 4 cut(s) | 335, 724, 799, 814 |
| SmoI | CTYRAG | 4 cut(s) | 335, 724, 799, 814 |
| Sse9I | AATT | 5 cut(s) | 203, 420, 525, 547, 824 |
| SsiI | CCGC | 9 cut(s) | 57, 79, 144, 156, 209, 461, 646, 965, 1088 |
| SspMI | CTAG | 1 cut(s) | 593 |
| StyD4I | CCNGG | 8 cut(s) | 93, 183, 198, 323, 516, 536, 834, 1081 |
| StyI | CCWWGG | 3 cut(s) | 290, 693, 773 |
| TaaI | ACNGT | 4 cut(s) | 437, 880, 1054, 1106 |
| TaqI | TCGA | 5 cut(s) | 299, 544, 1043, 1122, 1146 |
| TaqII | GACCGA | 2 cut(s) | 851, 1178 |
| TasI | AATT | 5 cut(s) | 203, 420, 525, 547, 824 |
| TauI | GCSGC | 3 cut(s) | 159, 212, 648 |
| TfiI | GAWTC | 5 cut(s) | 260, 301, 361, 968, 1193 |
| Tru1I | TTAA | 1 cut(s) | 687 |
| Tru9I | TTAA | 1 cut(s) | 687 |
| TscAI | CASTG | 3 cut(s) | 274, 463, 635 |
| TseFI | GTSAC | 4 cut(s) | 25, 728, 794, 880 |
| Tsp45I | GTSAC | 4 cut(s) | 25, 728, 794, 880 |
| TspDTI | ATGAA | 1 cut(s) | 709 |
| TspGWI | ACGGA | 1 cut(s) | 441 |
| TspRI | CASTG | 3 cut(s) | 274, 463, 635 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 205 |
| VneI | GTGCAC | 1 cut(s) | 1011 |
| VpaK11BI | GGWCC | 2 cut(s) | 832, 863 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 188 |
| XapI | RAATTY | 2 cut(s) | 547, 824 |
| XmnI | GAANNNNTTC | 1 cut(s) | 809 |
| XspI | CTAG | 1 cut(s) | 593 |
| Zsp2I | ATGCAT | 1 cut(s) | 706 |