Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001775

Physical Location & Seq

Genomic Coordinates Forward (+)

2641706 .. 2647988

Gene Structure 6283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGCTCACGGCGATGGTGACGGCGTTACTCACGACCTGTTCTCGCTGCTCGCCTCCGGCGATCGGGACTTCCTCGTCCGTAACAACGGCGACCAGGTAAAGATCAATACTTTGACTGGTAAGATTTTGGGGTTGTATTTCTCTGGCTCATGGTGTGGTCCATGTCGTCGTTTCACCCCAAACTTGGTGGAGGTCTACCAGGACCTTGCTTCCAAAGGGGACTTTGAAGTTGTGTTTATCTCTTCTGATAGAGATGAGGAGTCATTCAGTCGCTACTTCTCTGAAATGCCGTGGCTTGCGGTTCCCTTTTCGGATTTGGAGACCCGAAAGGGCCTGAAAGACTTGTTCAAAGTCAGGGGAATTCCTCATCTTGTTGTTATTGATGCCAATGGGAAGGTTTCCACTGATAAAGGGACTGTAGTTGTGAGGGAGTATGGTGTGGAGGGGTACCCGTTCACCGCGGAGAAGATTAGTTTCTTGAAAGAGCAAGAGGAGGCGGCTAAGAAGAATCAGTCCTTGAGTTCTCTCTTGGTTTCTAATTCTCGGGATTACTTGGTTTCGAGTGATGGGAATAAGGTGTCTGTGTCTGAGCTTGAAGGAAAGATAGTTGGTCTGTATTTCTCACTTAATATTCACAAGCCATGCAAAGACTTTACTCAGACACTTTTGAAGTTCTATAAGAGTCTCAAGGAGAAAGGAGAGAACTTTGAGATAGTGTTGGTATCTCTAGACCATGAAGAAGAACACTTCAAAGGGATTGCAGTCCCATGGTTGGCATTGCCATTTAAGGACAAGAACTGCAAAAAACTTGCTCGCTACTTTGAGCTTGAGACAGTACCAACACTAGTTATAATTGGGCAAGATGGAAAGACCTTACACCCCAATGTGACTGAACTTATTGAAGAGCATGGGATTGAAGCCTACCCATTTTCAGCAGAGAAGGTTGCTGAGCTTGCTGAGATTGAGAAGGCCAAACTGGAAGCACAGACTCTGGAGTCGCTTTTGGTGACTGAAGACATAGACTTTGTGATAGAGACGAGCGGTGCCAAGGTACCGGTGTCTGAGCTTGTTGGGAAGTACATTCTGCTCTATTTCTCAGCTCATTGGTGTCCCCCATGTCGTTCATTCCTGCCAAAGCTCATAGCAGCATATCATGAGATCAAGGCTAAGGACAACGCATTTGAAATCATCTTTATCTCAAGTGATCGTGATCAATCCTCCTTCGATGACTTCTTTTCGAGCATGCCTTGGTTAGCCCTCCCATTTGGTGATCCAAGGAAGACGTTCCTGCAGCGCAAATTCAAAATCCAAGGCATTCCTGCTGTGGTAGCTATCAGCCCCACTGGCAAGACACTCACCACGACAGCCCGAAAGCTTATACTAGCTCATGGTGCTGATGCTTTTCCATTCACTGAAGAGCATTTGAAGCATTTGGAAGAAAAGGTAGACCAAGAAGCAAAGGGGTGGCCTGAGAAAGTGAAGAGTGAGCTACATGTTGAACATGAACTTGCACGCACTCGTTGCCACGAATATGTGTGTAATGGGTGTAGGGAGTCCGGAAGTGGTTGGTCTTTTTCCTGTAAGAAGTGTGACTTTGATCTTCACCCACAATGTGCTCTGAAGAACAATGAAGCAACAAAGGATGATCCTGAGACCAAGGCAAAGGAGGGATATGTTTGTGATGGTGACGTGTGCCATTTGCTCTTTGCAGTAGTGATGGGTGAGACAGAGGTGCCCACGACAAGCATAGACATCCGGAAGAACGAGAAAAATGGGCGCCTCAAGGCATTGGATGTAGTGCTCTCTAAAGCTTTTGTCCAGGTTCCTCACAAGCTACAGAATTTTCTTAAGTCACAGTTTAGAAGACTACCAAAAGCTGATGGAGTTAAAACAGTGAGCTCTGTCCCTAAAAAGGCTTCATCTTTGGAGGTTGACCTGGAAAAGCAGTTGCAAGCATGGAGAGAAAATCCTTCATGGGATGATCAACCACCACATATAAAGGTCAGTGTGCCAAAAGGTTCTCTCTGCAACCTCAGTGTAAATGTCAATGTTGGGTTGCCCCCAGATGCAGTATATAATATTGTCACTGACCCCGACAATAAGAGGGTTTTCAAGAATATTAAGGAGGTGATATCCAGAAGAGTTTTGGTTGACGAAGGTCTTAGGCAGGTTGTTGATCTAGAGCAAGCAGCTATATGGAAATTTCTTTGGTGGTCAGGGACCATTGCAGTTCATGTTTTAGTAGATCAAAACAGAGAAGACCACTCGATGAAGTTCAAGCAAGTCAAAACAGGGTTTATGGAGAAATTTGAAGGCTGCTGGAGAGTGGAGCCTCTTTTTGTTGATGAAAAAACCTGCTTTCCCTATAAACCCACAACATGGGCAGACTATAATTCACACACTGGAGGCAAAGGAAGGATCGGATCAAAGGTAAGCTTGGATCAACTGATCCAACCGTCTATTGTTCCTCCCCCACCCATTTCTTGGTATCTGAGGGGTATCACTGCCAAGACCACAGAGATGTTGATAAATGATCTTCTTGCTGAAGCCGCCAGAATACGGGGAGAATTAAACCCTGAGAAGTCTGATAAAGAGGTTGAAATGTCTGAGGAAGTACATAATCAAGTTGATAACACCTGTAACATCAAAGAAAGATGGGCTATGCATAGGAGAAATGCAAAGCAATGTCATCGGAGGCTACCGACTGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006935 GO:0008150 GO:0008152 GO:0009605 GO:0009636 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0010038 GO:0010183 GO:0010769 GO:0015036 GO:0016043 GO:0016049 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0045595 GO:0046686 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0051716 GO:0055114 GO:0060284 GO:0060560 GO:0065007 GO:0070887 GO:0071840 GO:0080092 GO:0097237 GO:0098754 GO:0098869 GO:1990748 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2 Thioredoxin_8

Protein Analysis

905

Amino Acids

102.11

Weight (kDa)

6.33

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	26 - 135	2.5e-07	Redoxin
AhpC-TSA	PF00578	28 - 133	5.5e-08	AhpC/TSA family
Thioredoxin_8	PF13905	40 - 133	2.3e-28	Thioredoxin-like
AhpC-TSA	PF00578	187 - 290	7.7e-06	AhpC/TSA family
Thioredoxin_8	PF13905	200 - 290	5e-22	Thioredoxin-like
AhpC-TSA	PF00578	346 - 416	1.8e-08	AhpC/TSA family
Thioredoxin_8	PF13905	358 - 450	1.8e-27	Thioredoxin-like
C1_2	PF03107	498 - 539	2.2e-06	C1 domain
DUF220	PF02713	739 - 810	2.2e-28	Domain of unknown function DUF220

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70480 AT1G70480
fragaria_vesca	FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260
malus_domestica	MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1
prunus_persica	Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1
pyrus_communis	pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050
rosa_chinensis	RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421
rosa_laevigata	RLG00000005898 RLG00000005899 RLG00000005900
rosa_multiflora	Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270
rosa_rugosa	Rorug05G0496400 Rorug05G0496500
rosa_samantha	Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000
rosa_wichuraiana	Rw4G034900 Rw4G034910 Rw4G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
AasI	GACNNNNNNGTC	2 cut(s)	74, 994
Acc36I	ACCTGC	2 cut(s)	2158, 2363
Acc65I	GGTACC	2 cut(s)	447, 1051
AccB1I	GGYRCC	5 cut(s)	447, 1043, 1051, 1732, 1776
AccB7I	CCANNNNNTGG	2 cut(s)	2379, 2484
AccBSI	CCGCTC	1 cut(s)	1041
AccI	GTMKAC	2 cut(s)	195, 1446
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	2 cut(s)	1556, 1755
AciI	CCGC	6 cut(s)	299, 459, 461, 497, 1041, 2550
AclWI	GGATC	6 cut(s)	1265, 1640, 2426, 2431, 2443, 2448
AcsI	RAATTY	5 cut(s)	360, 1298, 1840, 2201, 2306
AcuI	CTGAAG	4 cut(s)	1032, 1434, 1640, 2565
AcyI	GRCGYC	1 cut(s)	1777
AdeI	CACNNNGTG	1 cut(s)	1613
AfaI	GTAC	5 cut(s)	449, 837, 1053, 1079, 2616
AfiI	CCNNNNNNNGG	7 cut(s)	63, 184, 772, 1912, 2379, 2484, 2559
AflII	CTTAAG	1 cut(s)	1847
AflIII	ACRYGT	2 cut(s)	1492, 1689
AgeI	ACCGGT	1 cut(s)	1054
AhlI	ACTAGT	1 cut(s)	844
AjiI	CACGTC	1 cut(s)	1690
AjnI	CCWGG	4 cut(s)	93, 198, 1818, 1935
Alw21I	GWGCWC	3 cut(s)	1618, 1803, 1901
Alw26I	GTCTC	6 cut(s)	314, 689, 824, 1028, 1646, 1718
AlwI	GGATC	6 cut(s)	1265, 1640, 2426, 2431, 2443, 2448
AlwNI	CAGNNNCTG	1 cut(s)	991
Ama87I	CYCGRG	1 cut(s)	543
Aor13HI	TCCGGA	2 cut(s)	1556, 1755
AoxI	GGCC	3 cut(s)	331, 969, 1466
ApeKI	GCWGC	5 cut(s)	46, 1145, 1291, 2189, 2316
ApoI	RAATTY	5 cut(s)	360, 1298, 1840, 2201, 2306
ArsI	GACNNNNNNTTYG	4 cut(s)	1007, 1039, 1163, 1195
AsiGI	ACCGGT	1 cut(s)	1054
Asp700I	GAANNNNTTC	1 cut(s)	1283
Asp718I	GGTACC	2 cut(s)	447, 1051
AspLEI	GCGC	2 cut(s)	1296, 1779
AspS9I	GGNCC	4 cut(s)	158, 202, 331, 2220
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	3 cut(s)	158, 202, 2220
BaeGI	GKGCMC	1 cut(s)	1737
BaeI	ACNNNNGTAYC	2 cut(s)	1043, 1076
BanI	GGYRCC	5 cut(s)	447, 1043, 1051, 1732, 1776
BanII	GRGCYC	1 cut(s)	1901
BbsI	GAAGAC	4 cut(s)	1020, 1286, 1870, 2265
Bbv12I	GWGCWC	3 cut(s)	1618, 1803, 1901
BbvI	GCAGC	5 cut(s)	33, 1157, 1303, 2201, 2303
BccI	CCATC	7 cut(s)	8, 560, 857, 1676, 1711, 1874, 2649
BceAI	ACGGC	4 cut(s)	25, 37, 103, 274
BcgI	CGANNNNNNTGC	2 cut(s)	2672, 2706
BciT130I	CCWGG	4 cut(s)	95, 200, 1820, 1937
BclI	TGATCA	2 cut(s)	1210, 1981
BcoDI	GTCTC	6 cut(s)	314, 689, 824, 1028, 1646, 1718
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	4 cut(s)	728, 845, 1382, 2180
BfmI	CTRYAG	3 cut(s)	417, 1289, 1835
BfoI	RGCGCY	1 cut(s)	1780
BfrI	CTTAAG	1 cut(s)	1847
BfuAI	ACCTGC	2 cut(s)	2158, 2363
BglI	GCCNNNNNGGC	1 cut(s)	1344
BisI	GCNGC	7 cut(s)	47, 498, 1146, 1292, 2190, 2317, 2550
BlpI	GCTNAGC	1 cut(s)	948
BlsI	GCNGC	7 cut(s)	48, 499, 1147, 1293, 2191, 2318, 2551
Bme1390I	CCNGG	4 cut(s)	95, 200, 1820, 1937
Bme18I	GGWCC	3 cut(s)	158, 202, 2220
BmeT110I	CYCGRG	1 cut(s)	543
BmgBI	CACGTC	1 cut(s)	1690
BmgT120I	GGNCC	4 cut(s)	158, 202, 331, 2220
BmiI	GGNNCC	9 cut(s)	303, 449, 1045, 1053, 1734, 1778, 1824, 2221, 2331
BmrFI	CCNGG	4 cut(s)	95, 200, 1820, 1937
BmsI	GCATC	3 cut(s)	373, 1387, 2056
BoxI	GACNNNNGTC	1 cut(s)	2157
BpiI	GAAGAC	4 cut(s)	1020, 1286, 1870, 2265
BpmI	CTGGAG	3 cut(s)	1013, 2341, 2424
Bpu10I	CCTNAGC	1 cut(s)	1167
Bpu1102I	GCTNAGC	1 cut(s)	948
BpuEI	CTTGAG	5 cut(s)	538, 671, 848, 1183, 1766
BsaBI	GATNNNNATC	1 cut(s)	1209
BsaHI	GRCGYC	1 cut(s)	1777
BsaI	GGTCTC	2 cut(s)	314, 1646
BsaJI	CCNNGG	8 cut(s)	290, 459, 767, 1047, 1247, 1274, 1309, 1656
BsaWI	WCCGGW	3 cut(s)	1054, 1556, 1755
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 184, 772, 1912, 2379, 2484, 2559
Bse118I	RCCGGY	1 cut(s)	1054
Bse1I	ACTGG	4 cut(s)	121, 981, 1348, 2407
Bse3DI	GCAATG	3 cut(s)	776, 2223, 2690
Bse8I	GATNNNNATC	1 cut(s)	1209
BseAI	TCCGGA	2 cut(s)	1556, 1755
BseBI	CCWGG	4 cut(s)	95, 200, 1820, 1937
BseDI	CCNNGG	8 cut(s)	290, 459, 767, 1047, 1247, 1274, 1309, 1656
BseGI	GGATG	4 cut(s)	1648, 1752, 1798, 1984
BseJI	GATNNNNATC	1 cut(s)	1209
BseLI	CCNNNNNNNGG	7 cut(s)	63, 184, 772, 1912, 2379, 2484, 2559
BseMI	GCAATG	3 cut(s)	776, 2223, 2690
BseNI	ACTGG	4 cut(s)	121, 981, 1348, 2407
BseRI	GAGGAG	2 cut(s)	272, 506
BseSI	GKGCMC	1 cut(s)	1737
BseXI	GCAGC	5 cut(s)	33, 1157, 1303, 2201, 2303
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	333, 971, 1468
BshNI	GGYRCC	5 cut(s)	447, 1043, 1051, 1732, 1776
BshTI	ACCGGT	1 cut(s)	1054
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	1618, 1803, 1901
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	4 cut(s)	57, 1055, 1557, 1756
BslFI	GGGAC	7 cut(s)	80, 233, 427, 749, 1095, 1889, 2233
BslI	CCNNNNNNNGG	7 cut(s)	63, 184, 772, 1912, 2379, 2484, 2559
BsmAI	GTCTC	6 cut(s)	314, 689, 824, 1028, 1646, 1718
BsmBI	CGTCTC	1 cut(s)	1028
BsmFI	GGGAC	7 cut(s)	80, 233, 427, 749, 1095, 1889, 2233
BsmI	GAATGC	1 cut(s)	1314
BsnI	GGCC	3 cut(s)	333, 971, 1468
Bso31I	GGTCTC	2 cut(s)	314, 1646
BsoBI	CYCGRG	1 cut(s)	543
Bsp1286I	GDGCHC	4 cut(s)	1618, 1737, 1803, 1901
Bsp13I	TCCGGA	2 cut(s)	1556, 1755
Bsp1720I	GCTNAGC	1 cut(s)	948
Bsp19I	CCATGG	1 cut(s)	767
BspACI	CCGC	6 cut(s)	299, 459, 461, 497, 1041, 2550
BspANI	GGCC	3 cut(s)	333, 971, 1468
BspEI	TCCGGA	2 cut(s)	1556, 1755
BspFNI	CGCG	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	1153
BspLI	GGNNCC	9 cut(s)	303, 449, 1045, 1053, 1734, 1778, 1824, 2221, 2331
BspMAI	CTGCAG	1 cut(s)	1293
BspMI	ACCTGC	2 cut(s)	2158, 2363
BspPI	GGATC	6 cut(s)	1265, 1640, 2426, 2431, 2443, 2448
BspQI	GCTCTTC	2 cut(s)	897, 1410
BspT107I	GGYRCC	5 cut(s)	447, 1043, 1051, 1732, 1776
BspTI	CTTAAG	1 cut(s)	1847
BspTNI	GGTCTC	2 cut(s)	314, 1646
BsrBI	CCGCTC	1 cut(s)	1041
BsrDI	GCAATG	3 cut(s)	776, 2223, 2690
BsrFI	RCCGGY	1 cut(s)	1054
BsrI	ACTGG	4 cut(s)	121, 981, 1348, 2407
BssAI	RCCGGY	1 cut(s)	1054
BssECI	CCNNGG	8 cut(s)	290, 459, 767, 1047, 1247, 1274, 1309, 1656
BssNI	GRCGYC	1 cut(s)	1777
BssT1I	CCWWGG	6 cut(s)	767, 1047, 1247, 1274, 1309, 1656
Bst2UI	CCWGG	4 cut(s)	95, 200, 1820, 1937
Bst4CI	ACNGT	5 cut(s)	418, 835, 1857, 1894, 2457
Bst6I	CTCTTC	5 cut(s)	247, 897, 1410, 1475, 2134
BstACI	GRCGYC	1 cut(s)	1777
BstAFI	CTTAAG	1 cut(s)	1847
BstAPI	GCANNNNNTGC	1 cut(s)	1521
BstC8I	GCNNGC	8 cut(s)	51, 297, 814, 954, 1244, 1513, 1953, 2187
BstDSI	CCRYGG	3 cut(s)	290, 459, 767
BstF5I	GGATG	4 cut(s)	1648, 1752, 1798, 1984
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	1780
BstHHI	GCGC	2 cut(s)	1296, 1779
BstMAI	GTCTC	6 cut(s)	314, 689, 824, 1028, 1646, 1718
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	7 cut(s)	953, 1328, 1344, 1391, 1426, 1521, 2549
BstNI	CCWGG	4 cut(s)	95, 200, 1820, 1937
BstNSI	RCATGY	2 cut(s)	1246, 1496
BstPAI	GACNNNNGTC	1 cut(s)	2157
BstSCI	CCNGG	4 cut(s)	93, 198, 1818, 1935
BstSFI	CTRYAG	3 cut(s)	417, 1289, 1835
BstSLI	GKGCMC	1 cut(s)	1737
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	5 cut(s)	33, 1157, 1303, 2201, 2303
BstV2I	GAAGAC	4 cut(s)	1020, 1286, 1870, 2265
BsuRI	GGCC	3 cut(s)	333, 971, 1468
BtgI	CCRYGG	3 cut(s)	290, 459, 767
BtgZI	GCGATG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	1690
BtsCI	GGATG	4 cut(s)	1648, 1752, 1798, 1984
BtsI	GCAGTG	1 cut(s)	2502
BtsIMutI	CAGTG	9 cut(s)	402, 1341, 1410, 1899, 2011, 2041, 2085, 2400, 2502
BveI	ACCTGC	2 cut(s)	2158, 2363
Cac8I	GCNNGC	8 cut(s)	51, 297, 814, 954, 1244, 1513, 1953, 2187
CaiI	CAGNNNCTG	1 cut(s)	991
CciI	TCATGA	1 cut(s)	1153
CfoI	GCGC	2 cut(s)	1296, 1779
Cfr10I	RCCGGY	1 cut(s)	1054
Cfr13I	GGNCC	4 cut(s)	158, 202, 331, 2220
Cfr42I	CCGCGG	1 cut(s)	462
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	5 cut(s)	448, 836, 1052, 1078, 2615
CspAI	ACCGGT	1 cut(s)	1054
CspCI	CAANNNNNGTGG	2 cut(s)	168, 203
CviQI	GTAC	5 cut(s)	448, 836, 1052, 1078, 2615
DinI	GGCGCC	1 cut(s)	1778
DraIII	CACNNNGTG	1 cut(s)	1613
DrdI	GACNNNNNNGTC	2 cut(s)	74, 994
DseDI	GACNNNNNNGTC	2 cut(s)	74, 994
Eam1104I	CTCTTC	5 cut(s)	247, 897, 1410, 1475, 2134
EarI	CTCTTC	5 cut(s)	247, 897, 1410, 1475, 2134
Ecl136II	GAGCTC	1 cut(s)	1899
Eco130I	CCWWGG	6 cut(s)	767, 1047, 1247, 1274, 1309, 1656
Eco24I	GRGCYC	1 cut(s)	1901
Eco31I	GGTCTC	2 cut(s)	314, 1646
Eco32I	GATATC	1 cut(s)	2133
Eco47I	GGWCC	3 cut(s)	158, 202, 2220
Eco53kI	GAGCTC	1 cut(s)	1899
Eco57I	CTGAAG	4 cut(s)	1032, 1434, 1640, 2565
Eco88I	CYCGRG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	1899
EcoO109I	RGGNCCY	2 cut(s)	202, 331
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	4 cut(s)	93, 198, 1818, 1935
EcoRV	GATATC	1 cut(s)	2133
EcoT14I	CCWWGG	6 cut(s)	767, 1047, 1247, 1274, 1309, 1656
EcoT22I	ATGCAT	1 cut(s)	2667
EcoT38I	GRGCYC	1 cut(s)	1901
EgeI	GGCGCC	1 cut(s)	1778
EheI	GGCGCC	1 cut(s)	1778
ErhI	CCWWGG	6 cut(s)	767, 1047, 1247, 1274, 1309, 1656
Esp3I	CGTCTC	1 cut(s)	1028
FalI	AAGNNNNNCTT	4 cut(s)	1577, 1609, 2420, 2452
FaqI	GGGAC	7 cut(s)	80, 233, 427, 749, 1095, 1889, 2233
FbaI	TGATCA	2 cut(s)	1210, 1981
FblI	GTMKAC	2 cut(s)	195, 1446
Fnu4HI	GCNGC	7 cut(s)	47, 498, 1146, 1292, 2190, 2317, 2550
FokI	GGATG	4 cut(s)	1655, 1739, 1805, 1991
FriOI	GRGCYC	1 cut(s)	1901
Fsp4HI	GCNGC	7 cut(s)	47, 498, 1146, 1292, 2190, 2317, 2550
FspBI	CTAG	4 cut(s)	728, 845, 1382, 2180
GlaI	GCGC	2 cut(s)	1295, 1778
GluI	GCNGC	7 cut(s)	47, 498, 1146, 1292, 2190, 2317, 2550
GsuI	CTGGAG	3 cut(s)	1013, 2341, 2424
HaeII	RGCGCY	1 cut(s)	1780
HaeIII	GGCC	3 cut(s)	333, 971, 1468
HapII	CCGG	4 cut(s)	57, 1055, 1557, 1756
HhaI	GCGC	2 cut(s)	1296, 1779
Hin1I	GRCGYC	1 cut(s)	1777
Hin6I	GCGC	2 cut(s)	1294, 1777
HinP1I	GCGC	2 cut(s)	1294, 1777
HincII	GTYRAC	2 cut(s)	1933, 2152
HindII	GTYRAC	2 cut(s)	1933, 2152
HindIII	AAGCTT	3 cut(s)	1373, 1809, 2434
HinfI	GANTC	6 cut(s)	260, 508, 682, 988, 995, 1553
HpaII	CCGG	4 cut(s)	57, 1055, 1557, 1756
Hpy166II	GTNNAC	5 cut(s)	196, 456, 1447, 1933, 2152
Hpy8I	GTNNAC	5 cut(s)	196, 456, 1447, 1933, 2152
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	9 cut(s)	388, 590, 934, 961, 1231, 1980, 2150, 2306, 2409
HpyCH4III	ACNGT	5 cut(s)	418, 835, 1857, 1894, 2457
HpyCH4IV	ACGT	2 cut(s)	1283, 1689
HpyF10VI	GCNNNNNNNGC	7 cut(s)	953, 1328, 1344, 1391, 1426, 1521, 2549
HpySE526I	ACGT	2 cut(s)	1283, 1689
Hsp92I	GRCGYC	1 cut(s)	1777
HspAI	GCGC	2 cut(s)	1294, 1777
KasI	GGCGCC	1 cut(s)	1776
Kpn2I	TCCGGA	2 cut(s)	1556, 1755
KpnI	GGTACC	2 cut(s)	451, 1055
Ksp22I	TGATCA	2 cut(s)	1210, 1981
KspI	CCGCGG	1 cut(s)	462
LguI	GCTCTTC	2 cut(s)	897, 1410
LmnI	GCTCC	1 cut(s)	2329
Lsp1109I	GCAGC	5 cut(s)	33, 1157, 1303, 2201, 2303
LweI	GCATC	3 cut(s)	373, 1387, 2056
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	4 cut(s)	728, 845, 1382, 2180
MaeII	ACGT	2 cut(s)	1283, 1689
MbiI	CCGCTC	1 cut(s)	1041
MhlI	GDGCHC	4 cut(s)	1618, 1737, 1803, 1901
MluCI	AATT	9 cut(s)	360, 538, 852, 1298, 1840, 2201, 2306, 2392, 2567
Mly113I	GGCGCC	1 cut(s)	1777
MlyI	GAGTC	5 cut(s)	269, 691, 982, 1004, 1562
MmeI	TCCRAC	1 cut(s)	2476
Mph1103I	ATGCAT	1 cut(s)	2667
MroI	TCCGGA	2 cut(s)	1556, 1755
MroXI	GAANNNNTTC	1 cut(s)	1283
MseI	TTAA	6 cut(s)	627, 786, 1848, 1887, 2121, 2570
MslI	CAYNNNNRTG	4 cut(s)	12, 882, 1530, 2519
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	1847
MspI	CCGG	4 cut(s)	57, 1055, 1557, 1756
MspR9I	CCNGG	4 cut(s)	95, 200, 1820, 1937
Mva1269I	GAATGC	1 cut(s)	1314
MvaI	CCWGG	4 cut(s)	95, 200, 1820, 1937
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	7 cut(s)	953, 1328, 1344, 1391, 1426, 1521, 2549
NarI	GGCGCC	1 cut(s)	1777
NcoI	CCATGG	1 cut(s)	767
NlaIV	GGNNCC	9 cut(s)	303, 449, 1045, 1053, 1734, 1778, 1824, 2221, 2331
NmuCI	GTSAC	7 cut(s)	17, 886, 1006, 1589, 1685, 1851, 2083
NsiI	ATGCAT	1 cut(s)	2667
NspI	RCATGY	2 cut(s)	1246, 1496
PaeI	GCATGC	1 cut(s)	1246
PagI	TCATGA	1 cut(s)	1153
PciI	ACATGT	1 cut(s)	1492
PciSI	GCTCTTC	2 cut(s)	897, 1410
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	1314
PdmI	GAANNNNTTC	1 cut(s)	1283
PfeI	GAWTC	1 cut(s)	508
PflMI	CCANNNNNTGG	2 cut(s)	2379, 2484
PinAI	ACCGGT	1 cut(s)	1054
PkrI	GCNGC	7 cut(s)	48, 499, 1147, 1293, 2191, 2318, 2551
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	5 cut(s)	268, 690, 982, 1003, 1561
PluTI	GGCGCC	1 cut(s)	1780
PpsI	GAGTC	5 cut(s)	268, 690, 982, 1003, 1561
PpuMI	RGGWCCY	1 cut(s)	202
PscI	ACATGT	1 cut(s)	1492
PshAI	GACNNNNGTC	1 cut(s)	2157
PsiI	TTATAA	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	1901
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	4 cut(s)	93, 198, 1818, 1935
PspGI	CCWGG	4 cut(s)	93, 198, 1818, 1935
PspN4I	GGNNCC	9 cut(s)	303, 449, 1045, 1053, 1734, 1778, 1824, 2221, 2331
PspPI	GGNCC	4 cut(s)	158, 202, 331, 2220
PspPPI	RGGWCCY	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	1293
PstNI	CAGNNNCTG	1 cut(s)	991
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	5 cut(s)	449, 837, 1053, 1079, 2616
RsaNI	GTAC	5 cut(s)	448, 836, 1052, 1078, 2615
RseI	CAYNNNNRTG	4 cut(s)	12, 882, 1530, 2519
SacI	GAGCTC	1 cut(s)	1901
SacII	CCGCGG	1 cut(s)	462
SapI	GCTCTTC	2 cut(s)	897, 1410
SaqAI	TTAA	6 cut(s)	627, 786, 1848, 1887, 2121, 2570
SatI	GCNGC	7 cut(s)	47, 498, 1146, 1292, 2190, 2317, 2550
Sau96I	GGNCC	4 cut(s)	158, 202, 331, 2220
SchI	GAGTC	5 cut(s)	269, 691, 982, 1004, 1562
ScrFI	CCNGG	4 cut(s)	95, 200, 1820, 1937
SduI	GDGCHC	4 cut(s)	1618, 1737, 1803, 1901
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	3 cut(s)	373, 1387, 2056
SfcI	CTRYAG	3 cut(s)	417, 1289, 1835
SfoI	GGCGCC	1 cut(s)	1778
Sfr303I	CCGCGG	1 cut(s)	462
SgrBI	CCGCGG	1 cut(s)	462
SinI	GGWCC	3 cut(s)	158, 202, 2220
SmiMI	CAYNNNNRTG	4 cut(s)	12, 882, 1530, 2519
SmlI	CTYRAG	6 cut(s)	517, 686, 827, 1198, 1781, 1847
SmoI	CTYRAG	6 cut(s)	517, 686, 827, 1198, 1781, 1847
SpeI	ACTAGT	1 cut(s)	844
SphI	GCATGC	1 cut(s)	1246
Sse9I	AATT	9 cut(s)	360, 538, 852, 1298, 1840, 2201, 2306, 2392, 2567
SsiI	CCGC	6 cut(s)	299, 459, 461, 497, 1041, 2550
SspDI	GGCGCC	1 cut(s)	1776
SspI	AATATT	3 cut(s)	631, 2080, 2119
SspMI	CTAG	4 cut(s)	728, 845, 1382, 2180
SstI	GAGCTC	1 cut(s)	1901
StyD4I	CCNGG	4 cut(s)	93, 198, 1818, 1935
StyI	CCWWGG	6 cut(s)	767, 1047, 1247, 1274, 1309, 1656
TaaI	ACNGT	5 cut(s)	418, 835, 1857, 1894, 2457
TaiI	ACGT	2 cut(s)	1286, 1692
TaqI	TCGA	4 cut(s)	560, 1224, 1238, 2267
TasI	AATT	9 cut(s)	360, 538, 852, 1298, 1840, 2201, 2306, 2392, 2567
TatI	WGTACW	2 cut(s)	1077, 2614
TauI	GCSGC	2 cut(s)	500, 2552
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	6 cut(s)	627, 786, 1848, 1887, 2121, 2570
Tru9I	TTAA	6 cut(s)	627, 786, 1848, 1887, 2121, 2570
TscAI	CASTG	9 cut(s)	409, 1348, 1417, 1899, 2011, 2041, 2092, 2407, 2509
TseFI	GTSAC	7 cut(s)	17, 886, 1006, 1589, 1685, 1851, 2083
TseI	GCWGC	5 cut(s)	46, 1145, 1291, 2189, 2316
Tsp45I	GTSAC	7 cut(s)	17, 886, 1006, 1589, 1685, 1851, 2083
TspDTI	ATGAA	9 cut(s)	750, 1113, 1518, 1644, 1908, 1962, 2222, 2285, 2361
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	9 cut(s)	409, 1348, 1417, 1899, 2011, 2041, 2092, 2407, 2509
Van91I	CCANNNNNTGG	2 cut(s)	2379, 2484
Vha464I	CTTAAG	1 cut(s)	1847
VpaK11BI	GGWCC	3 cut(s)	158, 202, 2220
XapI	RAATTY	5 cut(s)	360, 1298, 1840, 2201, 2306
XbaI	TCTAGA	2 cut(s)	727, 2179
XceI	RCATGY	2 cut(s)	1246, 1496
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2143, 2481
XmiI	GTMKAC	2 cut(s)	195, 1446
XmnI	GAANNNNTTC	1 cut(s)	1283
XspI	CTAG	4 cut(s)	728, 845, 1382, 2180
Zsp2I	ATGCAT	1 cut(s)	2667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.