Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001775

Physical Location & Seq

Genomic Coordinates Forward (+)

5414375 .. 5415610

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGTGAGACAGAGGTGACCAAGACAAGCGTAGACATCGACAAGAACGATAGAAATGGGCACCTCAAGCCCAAGGCCTTTAATCTGGCGTTTTCTAAAGCTTTGTTGCAGGTTCCTCACAAGCTGCAAAATTGCCTAAAGTCGCAGCTCAAGAGACTAGCAAAGGATGATGGAATGAAAAAGGTGAGCTCTGTTCCTAAAAAGGCTGCATCTTTGGAGGTTGACCTCGAGAAGCAGTTGCAAGCATGGAGAGAAAATCCTTCTTGGGTTGATCAACCACCGTATATAAAGGTCAGTGTACCAAAAGGTTCTCTTTGCAACCTGAGCGTAAACGTCAATGTTGGTTTACCTCCAGACGCAGTATATAATATTGTAACTGACCCCGACAATAAGAGAGTTTTCAAAAATATTAAGGTAAGAAGTGATATCAAGAAACGTTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF220

Protein Analysis

149

Amino Acids

16.59

Weight (kDa)

9.75

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70480 AT1G70480
fragaria_vesca	FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260
malus_domestica	MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1
prunus_persica	Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1
pyrus_communis	pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050
rosa_chinensis	RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421
rosa_laevigata	RLG00000005898 RLG00000005899 RLG00000005900
rosa_multiflora	Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270
rosa_rugosa	Rorug05G0496400 Rorug05G0496500
rosa_samantha	Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000
rosa_wichuraiana	Rw4G034900 Rw4G034910 Rw4G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	33
AclI	AACGTT	1 cut(s)	436
AfaI	GTAC	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	403
AluBI	AGCT	4 cut(s)	101, 124, 148, 189
AluI	AGCT	4 cut(s)	101, 124, 148, 189
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	2, 148
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	3 cut(s)	124, 145, 206
AsuHPI	GGTGA	3 cut(s)	17, 28, 196
AvaI	CYCGRG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	111, 157, 193
BccI	CCATC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	2, 148
BfaI	CTAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	3 cut(s)	125, 146, 207
BlsI	GCNGC	3 cut(s)	126, 147, 208
BmeT110I	CYCGRG	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	62, 114
BmsI	GCATC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	50, 134
BsaJI	CCNNGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	111, 157, 193
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	2, 148
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	63, 191
Bsp143I	GATC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	62, 114
BspMI	ACCTGC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	2, 148
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 324
BstPI	GGTNACC	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	111, 157, 193
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	243
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	7 cut(s)	70, 77, 101, 124, 148, 189, 206
CviKI_1	RGCY	7 cut(s)	70, 77, 101, 124, 148, 189, 206
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	249
FaiI	YATR	5 cut(s)	247, 285, 287, 364, 366
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	125, 146, 207
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	125, 146, 207
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	3 cut(s)	125, 146, 207
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	365
Hin1II	CATG	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	99
HphI	GGTGA	3 cut(s)	17, 28, 196
Hpy166II	GTNNAC	5 cut(s)	34, 223, 299, 331, 347
Hpy188III	TCNNGA	4 cut(s)	151, 229, 353, 430
Hpy8I	GTNNAC	5 cut(s)	34, 223, 299, 331, 347
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	2 cut(s)	333, 436
HpyCH4V	TGCA	5 cut(s)	109, 127, 209, 241, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 324
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	333, 436
Hsp92II	CATG	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	4 cut(s)	71, 95, 335, 366
Lsp1109I	GCAGC	3 cut(s)	111, 157, 193
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	333, 436
MaeIII	GTNAC	2 cut(s)	16, 373
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	63, 191
MluCI	AATT	1 cut(s)	130
MnlI	CCTC	6 cut(s)	7, 74, 126, 211, 236, 360
MseI	TTAA	2 cut(s)	81, 411
MwoI	GCNNNNNNNGC	2 cut(s)	67, 324
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	2 cut(s)	62, 114
NmuCI	GTSAC	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	126, 147, 208
Psp124BI	GAGCTC	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	62, 114
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	81, 411
SatI	GCNGC	3 cut(s)	125, 146, 207
Sau3AI	GATC	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	63, 191
SfaNI	GCATC	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	65, 149, 227
SmoI	CTYRAG	3 cut(s)	65, 149, 227
Sse9I	AATT	1 cut(s)	130
SseBI	AGGCCT	1 cut(s)	77
SspI	AATATT	2 cut(s)	370, 409
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	2 cut(s)	336, 439
TaqI	TCGA	2 cut(s)	39, 228
TasI	AATT	1 cut(s)	130
Tru1I	TTAA	2 cut(s)	81, 411
Tru9I	TTAA	2 cut(s)	81, 411
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	124, 145, 206
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.