Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001775

Physical Location & Seq

Genomic Coordinates Forward (+)

5306673 .. 5307833

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGTGAGACAGAGGTGACCACGACAAACGTAAACGTTGGCAAGAACGAGAGAAATGGGCAGCTCAAGCTCAAGGCCTTTAATTTGGCGTTTTCCAAAGCGTTGTTGCAGGTTCCTCAGAAGCTGCAAAATTGTGTAAAGTCGCAGCTAAAGAGACTGGTAAAGGATGACGGAGTGAAAACGGTGAGCTTTCTACCGAAAAAGGCTGCATCTTTGGAGGTTGAATTGGAGAAGCAGTTGCAAGCATGGAGAGAAAATCCTTCTTGGGTTGATCAACCACCAGATATGAAGGTCAGCGTACCAAAGGGTTCTCTTTGCAACCTCAGTGTAAGCGTTGACGTTGGGTTGCCCCCGGATGCAGTATATAATATTGTAACTGACCCTGATAATAAGAGGGTTTTCAAAAATATTAAGGCAAGAAGTGATATGCAGAAACGTTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF220

Protein Analysis

149

Amino Acids

16.51

Weight (kDa)

9.6

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70480 AT1G70480
fragaria_vesca	FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260
malus_domestica	MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1
prunus_persica	Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1
pyrus_communis	pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050
rosa_chinensis	RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421
rosa_laevigata	RLG00000005898 RLG00000005899 RLG00000005900
rosa_multiflora	Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270
rosa_rugosa	Rorug05G0496400 Rorug05G0496500
rosa_samantha	Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000
rosa_wichuraiana	Rw4G034900 Rw4G034910 Rw4G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AclI	AACGTT	2 cut(s)	36, 436
AfaI	GTAC	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	224, 403
AluBI	AGCT	5 cut(s)	64, 70, 124, 148, 189
AluI	AGCT	5 cut(s)	64, 70, 124, 148, 189
Alw26I	GTCTC	2 cut(s)	2, 148
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	61, 124, 145, 206
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	17, 28, 196
BbvI	GCAGC	4 cut(s)	73, 111, 157, 193
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	2, 148
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	62, 125, 146, 207
BlsI	GCNGC	4 cut(s)	63, 126, 147, 208
Bme1390I	CCNGG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	218, 346
BpuEI	CTTGAG	2 cut(s)	50, 56
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bse1I	ACTGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	172, 361
BseMII	CTCAG	2 cut(s)	131, 337
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	4 cut(s)	73, 111, 157, 193
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	2, 148
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	130, 336
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	117, 323
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	172, 361
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	2 cut(s)	2, 148
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	73, 111, 157, 193
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	172, 361
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	7 cut(s)	64, 70, 77, 124, 148, 189, 206
CviKI_1	RGCY	7 cut(s)	64, 70, 77, 124, 148, 189, 206
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	2 cut(s)	117, 323
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
FaeI	CATG	1 cut(s)	249
FaiI	YATR	5 cut(s)	247, 287, 364, 366, 428
FatI	CATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	62, 125, 146, 207
FokI	GGATG	2 cut(s)	179, 368
Fsp4HI	GCNGC	4 cut(s)	62, 125, 146, 207
GluI	GCNGC	4 cut(s)	62, 125, 146, 207
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	3 cut(s)	17, 28, 196
Hpy166II	GTNNAC	2 cut(s)	34, 337
Hpy188I	TCNGA	1 cut(s)	120
Hpy8I	GTNNAC	2 cut(s)	34, 337
HpyAV	CCTTC	2 cut(s)	270, 283
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	4 cut(s)	30, 36, 339, 436
HpyCH4V	TGCA	7 cut(s)	109, 127, 209, 241, 318, 359, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	117, 323
HpySE526I	ACGT	4 cut(s)	30, 36, 339, 436
Hsp92II	CATG	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	95, 143, 294, 366, 396
Lsp1109I	GCAGC	4 cut(s)	73, 111, 157, 193
LweI	GCATC	2 cut(s)	218, 346
MaeII	ACGT	4 cut(s)	30, 36, 339, 436
MaeIII	GTNAC	2 cut(s)	16, 373
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MluCI	AATT	3 cut(s)	82, 130, 224
MnlI	CCTC	5 cut(s)	7, 126, 211, 332, 387
MseI	TTAA	2 cut(s)	81, 411
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	63, 126, 147, 208
Psp1406I	AACGTT	2 cut(s)	36, 436
PspEI	GGTNACC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	114
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
SaqAI	TTAA	2 cut(s)	81, 411
SatI	GCNGC	4 cut(s)	62, 125, 146, 207
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	218, 346
SmlI	CTYRAG	2 cut(s)	65, 71
SmoI	CTYRAG	2 cut(s)	65, 71
Sse9I	AATT	3 cut(s)	82, 130, 224
SseBI	AGGCCT	1 cut(s)	77
SspI	AATATT	2 cut(s)	370, 409
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	4 cut(s)	33, 39, 342, 439
TasI	AATT	3 cut(s)	82, 130, 224
Tru1I	TTAA	2 cut(s)	81, 411
Tru9I	TTAA	2 cut(s)	81, 411
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	4 cut(s)	61, 124, 145, 206
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.