Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001775

Physical Location & Seq

Genomic Coordinates Reverse (-)

26320428 .. 26324011

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G251900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGCGAGACAGAGGTGACCACGACAAGCGTAAACGTCACCAAGAATGAGAGAAATGGGCACCTCAAGGCATTTGACCTTGTGATTTCTAAAACTCTTCTGCAGGTTCCTCACATGCTGCAGAATTGTCTAAAGTCACAGCTCAAGAGACTGGCAAAAGATGATGGAGTGAAAACAGTTATCTCTGTCCCTAAAAAGGCTACATCTTTGGAGGTTGATTTGGAGAAGCAGTTGCAGGCATGGAGAGAAAATCCTTCATGGGCTGATCAACCACCAGATATAAAGGTCAGTGTACCAAAAGGTTCTTTTTGCAACCTCAGTGTGAATGTCAATGTTGGGTTGCCCCCAGATGCAGTATATAACATTGTAACTGACCCTGACAATAAGAGGGTTTTCAAGAACATTAAGGAAGTGATATCCAGAAAAGTTTTGGTTGATGAAGGTTCTAGGCAGGTGGTTGAACTTGAGCAAGCAGCTTTATGGAGATTCCTTTGGTGGTCAGGGACCATTGCAGTTCATGTTTTAGTAGATCAAAACAGAGAAGACCATTCAATGAAGTTCAAGCAAGTCAAAACAGGGTTTATGAAGAGATTTGAAGGCTGCTGGAGAGTGGAACCTCTTTTTGTCGATGAAAAGACCTGCTTTCCCTTCAAACCCAAGACATGGACAGATTATCATTCATGCACTGGAGGCAAAGGGAGGATTGGATCAAAGGTCAGCTTAGAGCAACTGATCCAGCCAGCTATTGTTCCACCCCCTCCCATTTCTTGGTATCTAAGGGGTATCACCAGCAAGACCACCGAGATGCTGATAAATGATCTGCTTGCTGAAGCTGCCAGAATACGAGGAGAATTAAACCCTGAGAAGTCTAATAAAGAGCTTGAAATGTCTCAGGATCAGGAAATACTTAGTCAGGTTGATAATGTATCTAACATCAAAGAAAGATGGGCCCTGCGCAGGAGAAATGCAAAGCAACATCATCGGAGGCTACCGACCGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF220

Protein Analysis

335

Amino Acids

38.1

Weight (kDa)

9.37

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70480 AT1G70480
fragaria_vesca	FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260
malus_domestica	MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1
prunus_persica	Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1
pyrus_communis	pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050
rosa_chinensis	RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421
rosa_laevigata	RLG00000005898 RLG00000005899 RLG00000005900
rosa_multiflora	Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270
rosa_rugosa	Rorug05G0496400 Rorug05G0496500
rosa_samantha	Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000
rosa_wichuraiana	Rw4G034900 Rw4G034910 Rw4G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	442
Acc16I	TGCGCA	1 cut(s)	956
Acc36I	ACCTGC	3 cut(s)	94, 442, 647
AccB1I	GGYRCC	1 cut(s)	60
AccB7I	CCANNNNNTGG	2 cut(s)	663, 768
AciI	CCGC	1 cut(s)	996
AclWI	GGATC	3 cut(s)	715, 727, 903
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 957
AgsI	TTSAA	7 cut(s)	397, 461, 552, 562, 596, 652, 884
AluBI	AGCT	6 cut(s)	142, 476, 720, 743, 833, 880
AluI	AGCT	6 cut(s)	142, 476, 720, 743, 833, 880
Alw26I	GTCTC	3 cut(s)	2, 142, 894
AlwI	GGATC	3 cut(s)	715, 727, 903
AoxI	GGCC	1 cut(s)	948
ApaI	GGGCCC	1 cut(s)	952
ApeKI	GCWGC	4 cut(s)	118, 473, 600, 833
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	3 cut(s)	504, 948, 949
AsuHPI	GGTGA	3 cut(s)	28, 31, 778
AvaII	GGWCC	1 cut(s)	504
BaeGI	GKGCMC	2 cut(s)	63, 952
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	952
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	105, 485, 587, 820
BccI	CCATC	2 cut(s)	158, 939
BcgI	CGANNNNNNTGC	2 cut(s)	962, 996
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	2, 142, 894
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	101, 119
BfuAI	ACCTGC	3 cut(s)	94, 442, 647
BisI	GCNGC	4 cut(s)	119, 474, 601, 834
BlsI	GCNGC	4 cut(s)	120, 475, 602, 835
Bme18I	GGWCC	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	504, 948, 949
BmiI	GGNNCC	5 cut(s)	62, 108, 505, 615, 950
BmsI	GCATC	2 cut(s)	340, 795
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	2 cut(s)	625, 708
BpuEI	CTTGAG	3 cut(s)	50, 128, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 957
Bse1I	ACTGG	2 cut(s)	156, 691
Bse3DI	GCAATG	1 cut(s)	507
BseLI	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 957
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	331, 852, 905
BseNI	ACTGG	2 cut(s)	156, 691
BseRI	GAGGAG	1 cut(s)	861
BseSI	GKGCMC	2 cut(s)	63, 952
BseXI	GCAGC	4 cut(s)	105, 485, 587, 820
Bsh1285I	CGRYCG	1 cut(s)	996
BshFI	GGCC	1 cut(s)	950
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	996
BslFI	GGGAC	2 cut(s)	173, 517
BslI	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 957
BsmAI	GTCTC	3 cut(s)	2, 142, 894
BsmFI	GGGAC	2 cut(s)	173, 517
BsnI	GGCC	1 cut(s)	950
Bsp120I	GGGCCC	1 cut(s)	948
Bsp1286I	GDGCHC	2 cut(s)	63, 952
Bsp143I	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
BspACI	CCGC	1 cut(s)	996
BspANI	GGCC	1 cut(s)	950
BspCNI	CTCAG	3 cut(s)	330, 853, 904
BspLI	GGNNCC	5 cut(s)	62, 108, 505, 615, 950
BspMAI	CTGCAG	2 cut(s)	105, 123
BspMI	ACCTGC	3 cut(s)	94, 442, 647
BspPI	GGATC	3 cut(s)	715, 727, 903
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	156, 691
BssMI	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	102, 581
BstC8I	GCNNGC	4 cut(s)	237, 471, 741, 825
BstDEI	CTNAG	6 cut(s)	317, 721, 776, 861, 891, 908
BstEII	GGTNACC	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	957
BstKTI	GATC	6 cut(s)	268, 532, 710, 735, 820, 898
BstMAI	GTCTC	3 cut(s)	2, 142, 894
BstMBI	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
BstMCI	CGRYCG	1 cut(s)	996
BstMWI	GCNNNNNNNGC	2 cut(s)	690, 833
BstNSI	RCATGY	1 cut(s)	118
BstPI	GGTNACC	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	101, 119
BstSLI	GKGCMC	2 cut(s)	63, 952
BstV1I	GCAGC	4 cut(s)	105, 485, 587, 820
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	950
BtsIMutI	CAGTG	3 cut(s)	295, 325, 684
BveI	ACCTGC	3 cut(s)	94, 442, 647
Cac8I	GCNNGC	4 cut(s)	237, 471, 741, 825
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	3 cut(s)	504, 948, 949
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	6 cut(s)	115, 240, 258, 518, 663, 681
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	6 cut(s)	317, 721, 776, 861, 891, 908
DpnI	GATC	6 cut(s)	267, 531, 709, 734, 819, 897
DpnII	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
Eam1104I	CTCTTC	2 cut(s)	102, 581
EarI	CTCTTC	2 cut(s)	102, 581
Eco24I	GRGCYC	1 cut(s)	952
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	949
EcoO65I	GGTNACC	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	952
FaeI	CATG	6 cut(s)	118, 243, 261, 521, 666, 684
FalI	AAGNNNNNCTT	4 cut(s)	626, 658, 704, 736
FaqI	GGGAC	2 cut(s)	173, 517
FatI	CATG	6 cut(s)	114, 239, 257, 517, 662, 680
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	119, 474, 601, 834
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	4 cut(s)	119, 474, 601, 834
FspBI	CTAG	1 cut(s)	447
FspI	TGCGCA	1 cut(s)	956
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	4 cut(s)	119, 474, 601, 834
GsuI	CTGGAG	2 cut(s)	625, 708
HaeIII	GGCC	1 cut(s)	950
HhaI	GCGC	1 cut(s)	957
Hin1II	CATG	6 cut(s)	118, 243, 261, 521, 666, 684
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HinfI	GANTC	1 cut(s)	486
HphI	GGTGA	3 cut(s)	28, 31, 778
Hpy166II	GTNNAC	2 cut(s)	34, 293
Hpy188I	TCNGA	1 cut(s)	984
Hpy188III	TCNNGA	5 cut(s)	145, 397, 420, 893, 899
Hpy8I	GTNNAC	2 cut(s)	34, 293
HpyAV	CCTTC	4 cut(s)	264, 434, 590, 658
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	8 cut(s)	103, 121, 235, 312, 353, 512, 684, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	690, 833
HpyF3I	CTNAG	6 cut(s)	317, 721, 776, 861, 891, 908
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	6 cut(s)	118, 243, 261, 521, 666, 684
HspAI	GCGC	1 cut(s)	955
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
Lsp1109I	GCAGC	4 cut(s)	105, 485, 587, 820
LweI	GCATC	2 cut(s)	340, 795
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	4 cut(s)	16, 37, 135, 367
MalI	GATC	6 cut(s)	267, 531, 709, 734, 819, 897
MboI	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
MboII	GAAGA	3 cut(s)	89, 554, 598
MhlI	GDGCHC	2 cut(s)	63, 952
MluCI	AATT	2 cut(s)	124, 851
MseI	TTAA	2 cut(s)	405, 854
MslI	CAYNNNNRTG	1 cut(s)	803
MwoI	GCNNNNNNNGC	2 cut(s)	690, 833
NdeII	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
NlaIII	CATG	6 cut(s)	118, 243, 261, 521, 666, 684
NlaIV	GGNNCC	5 cut(s)	62, 108, 505, 615, 950
NmuCI	GTSAC	3 cut(s)	16, 37, 135
NsbI	TGCGCA	1 cut(s)	956
NspI	RCATGY	1 cut(s)	118
PaqCI	CACCTGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	486
PflMI	CCANNNNNTGG	2 cut(s)	663, 768
PkrI	GCNGC	4 cut(s)	120, 475, 602, 835
PspEI	GGTNACC	1 cut(s)	16
PspN4I	GGNNCC	5 cut(s)	62, 108, 505, 615, 950
PspOMI	GGGCCC	1 cut(s)	948
PspPI	GGNCC	3 cut(s)	504, 948, 949
PstI	CTGCAG	2 cut(s)	105, 123
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	803
SaqAI	TTAA	2 cut(s)	405, 854
SatI	GCNGC	4 cut(s)	119, 474, 601, 834
Sau3AI	GATC	6 cut(s)	265, 529, 707, 732, 817, 895
Sau96I	GGNCC	3 cut(s)	504, 948, 949
SduI	GDGCHC	2 cut(s)	63, 952
SfaNI	GCATC	2 cut(s)	340, 795
SfcI	CTRYAG	2 cut(s)	101, 119
SinI	GGWCC	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	3 cut(s)	65, 143, 464
SmoI	CTYRAG	3 cut(s)	65, 143, 464
Sse9I	AATT	2 cut(s)	124, 851
SsiI	CCGC	1 cut(s)	996
SspMI	CTAG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	627
TasI	AATT	2 cut(s)	124, 851
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	2 cut(s)	405, 854
Tru9I	TTAA	2 cut(s)	405, 854
TscAI	CASTG	3 cut(s)	295, 325, 691
TseFI	GTSAC	3 cut(s)	16, 37, 135
TseI	GCWGC	4 cut(s)	118, 473, 600, 833
Tsp45I	GTSAC	3 cut(s)	16, 37, 135
TspDTI	ATGAA	7 cut(s)	246, 453, 506, 569, 599, 645, 669
TspRI	CASTG	3 cut(s)	295, 325, 691
Van91I	CCANNNNNTGG	2 cut(s)	663, 768
VpaK11BI	GGWCC	1 cut(s)	504
XceI	RCATGY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.