Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463221.1

Orthogroup ID

OG0001775

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1768

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463221.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 946 bp

atgggtgagacagaggtgcccacgacaagcataggcatccggaagaacgagaaaaatgggcgcctcaaggcattggatgtagtgctctctaaagcttttgtccaggttcctcacaagctacagaattttcttaagtcacagtttagaagactaccaaaagctgatggagttaaaacagtgagctctgtccctaaaaaggcttcatctttggaggttgacctggaaaagcagttgcaagcatggagagaaaatccttcatgggatgatcaaacaccacatataaaggtcagtgtgccaaaaggctctctctgcaacctcagtgtaaacgtcaatgttgggttgcccccagatgcagtatataatattgtaactgaccccgacaataagagggttttcaagaatattaaggaggtgatatccagaagagttttggttgacgaaggtcttaggcaggttgttgatctagagcaagcagctatatggaaatttctttggtggtcagggaccattgcagttcatgttttagtagatcaaaacagagaagaccactcgatgaagttcaagcaagtcaaaacagggtttatggagagatttgaaggctgctggagagtggagcctctttttgttgatgaaaaaacctgctttccctataaacccacaacatgggcagactataattcacacactggaggcaaaggaaggatcggatcaaaggtgagcttggaccaactgatccaaccgtctattgttcctcccccacccatttcttggtatctgaggggtatcaccgccaagaccacagagatgttgataaatgatcttcttgctgaagccgccagaatacggggagaattaaaccctgagaagtctgataaagaggttgaaatgtctgaggaagtacttaatcaagttgataacacctgtaacatcaaagaaagatgggcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF220

Protein Analysis

315

Amino Acids

35.76

Weight (kDa)

8.73

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70480 AT1G70480
fragaria_vesca	FvH4_4g34241 FvH4_4g34250 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260 FvH4_4g34260
malus_domestica	MD13G1093300.v1.1 MD13G1093500.v1.1 MD16G1094500.v1.1 MD16G1094600.v1.1 MD16G1094700.v1.1
prunus_persica	Prupe.1G251900_v2.0.a1 Prupe.1G252000_v2.0.a1
pyrus_communis	pycom13g08130 pycom13g08140 pycom16g08030 pycom16g08040 pycom16g08050
rosa_chinensis	RchiOBHm_Chr4g0443711 RchiOBHm_Chr6g0250421
rosa_laevigata	RLG00000005898 RLG00000005899 RLG00000005900
rosa_multiflora	Rmu_co8463221.1_g000001 Rmu_sc0001426.1_g000010 Rmu_sc0001426.1_g000011 Rmu_sc0001426.1_g000013 Rmu_sc0008739.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384250 Rroxscaffold_5G00384260 Rroxscaffold_5G00384270
rosa_rugosa	Rorug05G0496400 Rorug05G0496500
rosa_samantha	Rh4AG406400 Rh4AG406500 Rh4AG406600 Rh4BG417400 Rh4BG417500 Rh4BG417600 Rh4BG417700 Rh4CG431900 Rh4DG413000
rosa_wichuraiana	Rw4G034900 Rw4G034910 Rw4G034920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	442, 647
AccB1I	GGYRCC	2 cut(s)	16, 60
AccB7I	CCANNNNNTGG	2 cut(s)	663, 768
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	2 cut(s)	789, 834
AclWI	GGATC	3 cut(s)	710, 715, 727
AcsI	RAATTY	2 cut(s)	124, 485
AcuI	CTGAAG	1 cut(s)	849
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	900
AfiI	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 843
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	397, 562, 596, 884
AjnI	CCWGG	2 cut(s)	102, 219
AluBI	AGCT	6 cut(s)	95, 118, 161, 183, 476, 720
AluI	AGCT	6 cut(s)	95, 118, 161, 183, 476, 720
Alw21I	GWGCWC	2 cut(s)	87, 185
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	3 cut(s)	710, 715, 727
Aor13HI	TCCGGA	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	473, 600
ApoI	RAATTY	2 cut(s)	124, 485
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	504, 724
AsuHPI	GGTGA	4 cut(s)	17, 424, 727, 778
AvaII	GGWCC	2 cut(s)	504, 724
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	2 cut(s)	16, 60
BanII	GRGCYC	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	154, 549
Bbv12I	GWGCWC	2 cut(s)	87, 185
BbvI	GCAGC	2 cut(s)	485, 587
BccI	CCATC	2 cut(s)	158, 933
BciT130I	CCWGG	2 cut(s)	104, 221
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	64
BfrI	CTTAAG	1 cut(s)	131
BfuAI	ACCTGC	2 cut(s)	442, 647
BisI	GCNGC	3 cut(s)	474, 601, 834
BlsI	GCNGC	3 cut(s)	475, 602, 835
BmcAI	AGTACT	1 cut(s)	900
Bme1390I	CCNGG	2 cut(s)	104, 221
Bme18I	GGWCC	2 cut(s)	504, 724
BmgT120I	GGNCC	2 cut(s)	504, 724
BmiI	GGNNCC	5 cut(s)	18, 62, 108, 505, 615
BmrFI	CCNGG	2 cut(s)	104, 221
BmsI	GCATC	2 cut(s)	45, 340
BoxI	GACNNNNGTC	1 cut(s)	441
BpiI	GAAGAC	2 cut(s)	154, 549
BpmI	CTGGAG	2 cut(s)	625, 708
BpuEI	CTTGAG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 843
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	104, 221
BseGI	GGATG	3 cut(s)	36, 82, 268
BseLI	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 843
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	4 cut(s)	331, 767, 852, 882
BseNI	ACTGG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	485, 587
BshNI	GGYRCC	2 cut(s)	16, 60
BsiHKAI	GWGCWC	2 cut(s)	87, 185
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	2 cut(s)	173, 517
BslI	CCNNNNNNNGG	4 cut(s)	196, 663, 768, 843
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	173, 517
Bsp1286I	GDGCHC	3 cut(s)	21, 87, 185
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
BspACI	CCGC	2 cut(s)	789, 834
BspCNI	CTCAG	4 cut(s)	330, 768, 853, 883
BspEI	TCCGGA	1 cut(s)	39
BspLI	GGNNCC	5 cut(s)	18, 62, 108, 505, 615
BspMI	ACCTGC	2 cut(s)	442, 647
BspPI	GGATC	3 cut(s)	710, 715, 727
BspT107I	GGYRCC	2 cut(s)	16, 60
BspTI	CTTAAG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	691
BssMI	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
BssNI	GRCGYC	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	104, 221
Bst4CI	ACNGT	3 cut(s)	141, 178, 741
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	61
BstAFI	CTTAAG	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	237, 471
BstDEI	CTNAG	5 cut(s)	317, 446, 776, 861, 891
BstF5I	GGATG	3 cut(s)	36, 82, 268
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	7 cut(s)	268, 463, 532, 705, 710, 735, 820
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 833
BstNI	CCWGG	2 cut(s)	104, 221
BstPAI	GACNNNNGTC	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	102, 219
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	485, 587
BstV2I	GAAGAC	2 cut(s)	154, 549
BtsCI	GGATG	3 cut(s)	36, 82, 268
BtsIMutI	CAGTG	4 cut(s)	183, 295, 325, 684
BveI	ACCTGC	2 cut(s)	442, 647
Cac8I	GCNNGC	2 cut(s)	237, 471
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	504, 724
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	4 cut(s)	240, 258, 518, 663
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	5 cut(s)	317, 446, 776, 861, 891
DinI	GGCGCC	1 cut(s)	62
DpnI	GATC	7 cut(s)	267, 462, 531, 704, 709, 734, 819
DpnII	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Ecl136II	GAGCTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	504, 724
Eco53kI	GAGCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	849
EcoICRI	GAGCTC	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	102, 219
EcoRV	GATATC	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	62
EheI	GGCGCC	1 cut(s)	62
FaeI	CATG	4 cut(s)	243, 261, 521, 666
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	2 cut(s)	173, 517
FatI	CATG	4 cut(s)	239, 257, 517, 662
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	474, 601, 834
FokI	GGATG	3 cut(s)	23, 89, 275
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	3 cut(s)	474, 601, 834
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	3 cut(s)	474, 601, 834
GsuI	CTGGAG	2 cut(s)	625, 708
HaeII	RGCGCY	1 cut(s)	64
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	4 cut(s)	243, 261, 521, 666
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	2 cut(s)	217, 436
HindII	GTYRAC	2 cut(s)	217, 436
HindIII	AAGCTT	1 cut(s)	93
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	4 cut(s)	17, 424, 727, 778
Hpy166II	GTNNAC	3 cut(s)	217, 325, 436
Hpy188I	TCNGA	4 cut(s)	707, 777, 871, 892
Hpy188III	TCNNGA	4 cut(s)	40, 397, 420, 464
Hpy8I	GTNNAC	3 cut(s)	217, 325, 436
HpyAV	CCTTC	4 cut(s)	264, 434, 590, 693
HpyCH4III	ACNGT	3 cut(s)	141, 178, 741
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	4 cut(s)	235, 312, 353, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 833
HpyF3I	CTNAG	5 cut(s)	317, 446, 776, 861, 891
HpySE526I	ACGT	1 cut(s)	327
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	243, 261, 521, 666
HspAI	GCGC	1 cut(s)	61
KasI	GGCGCC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	2 cut(s)	485, 587
LweI	GCATC	2 cut(s)	45, 340
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	3 cut(s)	135, 367, 923
MalI	GATC	7 cut(s)	267, 462, 531, 704, 709, 734, 819
MboI	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
MboII	GAAGA	5 cut(s)	55, 159, 435, 554, 812
MhlI	GDGCHC	3 cut(s)	21, 87, 185
MluCI	AATT	4 cut(s)	124, 485, 676, 851
Mly113I	GGCGCC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	760
MroI	TCCGGA	1 cut(s)	39
MseI	TTAA	5 cut(s)	132, 171, 405, 854, 903
MslI	CAYNNNNRTG	1 cut(s)	803
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	2 cut(s)	104, 221
MvaI	CCWGG	2 cut(s)	104, 221
MwoI	GCNNNNNNNGC	2 cut(s)	309, 833
NarI	GGCGCC	1 cut(s)	61
NdeII	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
NlaIII	CATG	4 cut(s)	243, 261, 521, 666
NlaIV	GGNNCC	5 cut(s)	18, 62, 108, 505, 615
NmuCI	GTSAC	1 cut(s)	135
PflMI	CCANNNNNTGG	2 cut(s)	663, 768
PkrI	GCNGC	3 cut(s)	475, 602, 835
PluTI	GGCGCC	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	102, 219
PspGI	CCWGG	2 cut(s)	102, 219
PspN4I	GGNNCC	5 cut(s)	18, 62, 108, 505, 615
PspPI	GGNCC	2 cut(s)	504, 724
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	803
SacI	GAGCTC	1 cut(s)	185
SaqAI	TTAA	5 cut(s)	132, 171, 405, 854, 903
SatI	GCNGC	3 cut(s)	474, 601, 834
Sau3AI	GATC	7 cut(s)	265, 460, 529, 702, 707, 732, 817
Sau96I	GGNCC	2 cut(s)	504, 724
ScaI	AGTACT	1 cut(s)	900
ScrFI	CCNGG	2 cut(s)	104, 221
SduI	GDGCHC	3 cut(s)	21, 87, 185
SfaNI	GCATC	2 cut(s)	45, 340
SfcI	CTRYAG	1 cut(s)	119
SfoI	GGCGCC	1 cut(s)	62
SinI	GGWCC	2 cut(s)	504, 724
SmiMI	CAYNNNNRTG	1 cut(s)	803
SmlI	CTYRAG	2 cut(s)	65, 131
SmoI	CTYRAG	2 cut(s)	65, 131
Sse9I	AATT	4 cut(s)	124, 485, 676, 851
SsiI	CCGC	2 cut(s)	789, 834
SspDI	GGCGCC	1 cut(s)	60
SspI	AATATT	2 cut(s)	364, 403
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	102, 219
TaaI	ACNGT	3 cut(s)	141, 178, 741
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	551
TasI	AATT	4 cut(s)	124, 485, 676, 851
TatI	WGTACW	1 cut(s)	898
TauI	GCSGC	1 cut(s)	836
Tru1I	TTAA	5 cut(s)	132, 171, 405, 854, 903
Tru9I	TTAA	5 cut(s)	132, 171, 405, 854, 903
TscAI	CASTG	4 cut(s)	183, 295, 325, 691
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	2 cut(s)	473, 600
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	5 cut(s)	192, 246, 506, 569, 645
TspRI	CASTG	4 cut(s)	183, 295, 325, 691
Van91I	CCANNNNNTGG	2 cut(s)	663, 768
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	504, 724
XapI	RAATTY	2 cut(s)	124, 485
XbaI	TCTAGA	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	2 cut(s)	427, 765
XspI	CTAG	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.