Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0015430

Physical Location & Seq

Genomic Coordinates Forward (+)

22222444 .. 22223193

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0130900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAAATACACCATGGTGGTTACTTTGACAAGCTGTCGGATGGTACGAAGAAGTATAGGGTGGCTAGGTTCAACAAGGATGGTGGGAAGATTTGGCTAGATGGGTTGGATCCTGACATGATTGCATGGACAGAGTTCGGGAATATAGCCTGGGATCTTGGGTACAGGGAGAAGCCCATTTCATACTACTTCAAGATTCCAAGGACTTCTTGCAATGAGGGTTGGGTGCCGATTCGGAATGATGCAGATGCGTTGGAGATGGTTAAATTGATTCCACTTAAGACTAGGCAAATCAGTGTGTACATAACTGGTGGAGGGAGGAGGAGGAAAGCAGAGGCTAAAGCTGATGACTTGGTGCCAACTGACCTAGATTGGGATAATCCCTTGAATAGGGTGACTGGTGAAGAGAGAAAAAGAATGGAGCATGAAAGCAACCTATTTGGGAGTCAGTTAAATAGGGGGAGTGATGTAGGTGGCAGTTCAAAGGGAGTAAATAGGGTTGGTGCAGATGTTAATGCACATGGAGGGAGGGTTAGGCATGAAGAAGGGCCAGCTGATGTTATAAATTTGGATTCAGATAGTGATGTGGATGTGGGGGAGGGTGTGCAGAGGCAAAGTCAAGGCACTTTTGGAGGGCTTAGTGACTTGGTCACCGATTGTTTGCTTCACAATGCAAGGTCAGGAAGGGAGGTAATGACAAAACTGGGCAGGAGCACAAGTGTTCACATATTCAGTCCAGTCACCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009987 GO:0016787 GO:0016810 GO:0016812 GO:0017168 GO:0030054 GO:0034641 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051187 GO:0055044 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Hydant_A_N Hydantoinase_A Hydantoinase_B

Protein Analysis

249

Amino Acids

27.62

Weight (kDa)

6.18

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	2 - 103	1.4e-10	PB1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37830
fragaria_vesca	FvH4_7g07120 FvH4_7g07120
malus_domestica	MD07G1077100.v1.1
prunus_persica	Prupe.2G098100_v2.0.a1
pyrus_communis	pycom07g06060
rosa_chinensis	RchiOBHm_Chr1g0337071
rosa_laevigata	RLG00000029307
rosa_multiflora	Rmu_sc0010164.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314980
rosa_rugosa	Rorug01G0130900
rosa_samantha	Rh1AG151600 Rh1BG120200 Rh1CG142800 Rh1DG158800
rosa_wichuraiana	Rw1G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AccB1I	GGYRCC	2 cut(s)	226, 355
AclWI	GGATC	3 cut(s)	104, 117, 162
AcsI	RAATTY	1 cut(s)	565
AfaI	GTAC	3 cut(s)	46, 164, 302
AfiI	CCNNNNNNNGG	2 cut(s)	373, 390
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	73, 193, 388, 483
AhdI	GACNNNNNGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	149
AleI	CACNNNNGTG	1 cut(s)	15
AluBI	AGCT	3 cut(s)	34, 344, 554
AluI	AGCT	3 cut(s)	34, 344, 554
Alw21I	GWGCWC	1 cut(s)	716
AlwI	GGATC	3 cut(s)	104, 117, 162
AoxI	GGCC	1 cut(s)	548
ApoI	RAATTY	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	406, 413, 643, 733
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	226, 355
Bbv12I	GWGCWC	1 cut(s)	716
BccI	CCATC	4 cut(s)	35, 74, 95, 253
BciT130I	CCWGG	1 cut(s)	151
BfaI	CTAG	4 cut(s)	66, 98, 285, 368
BfrI	CTTAAG	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	151
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	111, 228, 357
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	2 cut(s)	232, 238
BmuI	ACTGGG	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	13, 150, 200
BsaXI	ACNNNNNCTCC	4 cut(s)	516, 546, 703, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 390
Bse1I	ACTGG	4 cut(s)	313, 403, 708, 737
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	13, 150, 200
BseGI	GGATG	3 cut(s)	46, 85, 595
BseLI	CCNNNNNNNGG	2 cut(s)	373, 390
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	4 cut(s)	313, 403, 708, 737
BseRI	GAGGAG	2 cut(s)	334, 337
BsgI	GTGCAG	2 cut(s)	525, 626
BshFI	GGCC	1 cut(s)	550
BshNI	GGYRCC	2 cut(s)	226, 355
BsiHKAI	GWGCWC	1 cut(s)	716
BslI	CCNNNNNNNGG	2 cut(s)	373, 390
BsnI	GGCC	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	109, 154
Bsp19I	CCATGG	1 cut(s)	13
BspANI	GGCC	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	111, 228, 357
BspPI	GGATC	3 cut(s)	104, 117, 162
BspT107I	GGYRCC	2 cut(s)	226, 355
BspTI	CTTAAG	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	300
BsrI	ACTGG	4 cut(s)	313, 403, 708, 737
BssECI	CCNNGG	3 cut(s)	13, 150, 200
BssMI	GATC	2 cut(s)	109, 154
BssT1I	CCWWGG	2 cut(s)	13, 200
Bst2UI	CCWGG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	399
BstAFI	CTTAAG	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	638
BstDSI	CCRYGG	1 cut(s)	13
BstEII	GGTNACC	1 cut(s)	649
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	3 cut(s)	46, 85, 595
BstKTI	GATC	2 cut(s)	112, 157
BstMBI	GATC	2 cut(s)	109, 154
BstNI	CCWGG	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	149
BstX2I	RGATCY	2 cut(s)	109, 154
BstYI	RGATCY	2 cut(s)	109, 154
BsuRI	GGCC	1 cut(s)	550
BtgI	CCRYGG	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	46, 85, 595
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	552
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	3 cut(s)	45, 163, 301
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	6 cut(s)	14, 118, 126, 425, 521, 539
CviQI	GTAC	3 cut(s)	45, 163, 301
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	2 cut(s)	111, 156
DpnII	GATC	2 cut(s)	109, 154
DriI	GACNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	399
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	13, 200
Eco91I	GGTNACC	1 cut(s)	649
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoO65I	GGTNACC	1 cut(s)	649
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	13, 200
ErhI	CCWWGG	2 cut(s)	13, 200
FaeI	CATG	6 cut(s)	17, 121, 129, 428, 524, 542
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FatI	CATG	6 cut(s)	13, 117, 125, 424, 520, 538
FokI	GGATG	3 cut(s)	53, 92, 602
FspBI	CTAG	4 cut(s)	66, 98, 285, 368
HaeIII	GGCC	1 cut(s)	550
Hin1II	CATG	6 cut(s)	17, 121, 129, 428, 524, 542
HinfI	GANTC	5 cut(s)	196, 232, 271, 445, 572
HphI	GGTGA	4 cut(s)	406, 413, 643, 733
Hpy166II	GTNNAC	2 cut(s)	301, 724
Hpy188I	TCNGA	3 cut(s)	40, 237, 577
Hpy188III	TCNNGA	4 cut(s)	113, 139, 193, 681
Hpy8I	GTNNAC	2 cut(s)	301, 724
HpyAV	CCTTC	2 cut(s)	539, 678
HpyCH4V	TGCA	7 cut(s)	125, 213, 245, 506, 518, 607, 674
HpyF3I	CTNAG	1 cut(s)	638
Hsp92II	CATG	6 cut(s)	17, 121, 129, 428, 524, 542
Kzo9I	GATC	2 cut(s)	109, 154
LmnI	GCTCC	2 cut(s)	421, 711
LweI	GCATC	2 cut(s)	232, 238
MaeI	CTAG	4 cut(s)	66, 98, 285, 368
MaeIII	GTNAC	5 cut(s)	20, 394, 641, 649, 739
MalI	GATC	2 cut(s)	111, 156
MboI	GATC	2 cut(s)	109, 154
MboII	GAAGA	4 cut(s)	61, 100, 416, 554
MflI	RGATCY	2 cut(s)	109, 154
MhlI	GDGCHC	1 cut(s)	716
MluCI	AATT	2 cut(s)	266, 565
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	3 cut(s)	18, 87, 234
MseI	TTAA	4 cut(s)	264, 279, 452, 513
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	109, 154
NlaIII	CATG	6 cut(s)	17, 121, 129, 428, 524, 542
NlaIV	GGNNCC	3 cut(s)	111, 228, 357
NmuCI	GTSAC	4 cut(s)	394, 641, 649, 739
OliI	CACNNNNGTG	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	196, 232, 271, 572
PflFI	GACNNNGTC	1 cut(s)	647
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	149
PspEI	GGTNACC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	111, 228, 357
PspPI	GGNCC	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	109, 154
PsyI	GACNNNGTC	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	3 cut(s)	46, 164, 302
RsaNI	GTAC	3 cut(s)	45, 163, 301
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	4 cut(s)	264, 279, 452, 513
Sau3AI	GATC	2 cut(s)	109, 154
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	2 cut(s)	232, 238
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	266, 565
SspMI	CTAG	4 cut(s)	66, 98, 285, 368
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	13, 200
TasI	AATT	2 cut(s)	266, 565
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	4 cut(s)	196, 232, 271, 572
Tru1I	TTAA	4 cut(s)	264, 279, 452, 513
Tru9I	TTAA	4 cut(s)	264, 279, 452, 513
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	4 cut(s)	394, 641, 649, 739
Tsp45I	GTSAC	4 cut(s)	394, 641, 649, 739
TspDTI	ATGAA	3 cut(s)	171, 441, 555
TspRI	CASTG	1 cut(s)	301
Tth111I	GACNNNGTC	1 cut(s)	647
Vha464I	CTTAAG	1 cut(s)	278
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	565
XspI	CTAG	4 cut(s)	66, 98, 285, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.