Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009387

Physical Location & Seq

Genomic Coordinates Forward (+)

35170720 .. 35172317

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGATTGAGTTATGTGAAAGCTGTGAAGGAAGTATACAAGAAGAGGCCGGGACAGCCAAAGGGGGCAAAGAATAAGGCAAAGGAGCTTAAGGTTGTGCACGCTTCACCTATGAAGAAGTCACCGGCAAAGAAGCTCAAGACTCCTAGGAAGGAGGAGAAATTGGTGAATGGACTACCGGAATTCACTGTGGTGGAGGCAGTTCATGGTTCCAACCCATCACGGGAACTAAATGGCAGCTCATCAATGACAATCATCTCTGTGCATGCTTCTAGGAAAATTGCGGCTTCGTTTTGCAATGGCATGGAAGGTGAAGTTGTTGTTAAAGAATCATCAATCTCAGAACCACTTGGCGAGGTCGAGCAATTGGCTTCTCTTCGTACTCTAGCCATGAAATCAATGGTTGGTGAAAGAGATGGGGAATTGGTGTTGTCCGTGATGAGTTGGCGATGTACTGGACAACCGATGATGAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

159

Amino Acids

17.31

Weight (kDa)

9.73

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45880
fragaria_vesca	FvH4_7g14210 FvH4_7g14210 FvH4_7g14210
malus_domestica	MD01G1059300.v1.1 MD07G1138200.v1.1
prunus_persica	Prupe.2G169900_v2.0.a1 Prupe.2G169900_v2.0.a1
pyrus_communis	pycom07g13560
rosa_chinensis	RchiOBHm_Chr1g0355141
rosa_laevigata	RLG00000028174
rosa_multiflora	Rmu_sc0003115.1_g000036 Rmu_sc0004488.1_g000006
rosa_roxburghii	Rroxscaffold_4G00300640
rosa_rugosa	Rorug01G0245400 Rorug01G0245500 Rorug01G0245600
rosa_samantha	Rh1AG257700 Rh1BG227200 Rh1CG241300 Rh1DG254900
rosa_wichuraiana	Rw1G022740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	2 cut(s)	382, 454
AfiI	CCNNNNNNNGG	1 cut(s)	223
AflII	CTTAAG	1 cut(s)	89
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	4 cut(s)	23, 88, 136, 240
AluI	AGCT	4 cut(s)	23, 88, 136, 240
Alw21I	GWGCWC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	47
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	5 cut(s)	99, 114, 178, 323, 419
AvrII	CCTAGG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	2 cut(s)	226, 410
BcnI	CCSGG	1 cut(s)	51
BfaI	CTAG	3 cut(s)	147, 273, 386
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	238, 285
BlnI	CCTAGG	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	239, 286
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	3 cut(s)	50, 125, 179
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	102
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	146
BssNAI	GTATAC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	146
Bst1107I	GTATAC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	38, 381
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	102, 267
BstDEI	CTNAG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	249
BstZ17I	GTATAC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	102, 267
Cfr10I	RCCGGY	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	381, 453
CviAII	CATG	4 cut(s)	206, 266, 304, 391
CviJI	RGCY	9 cut(s)	23, 49, 58, 88, 136, 240, 287, 371, 389
CviKI_1	RGCY	9 cut(s)	23, 49, 58, 88, 136, 240, 287, 371, 389
CviQI	GTAC	2 cut(s)	381, 453
DdeI	CTNAG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	38, 381
EarI	CTCTTC	2 cut(s)	38, 381
Eco130I	CCWWGG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	4 cut(s)	209, 269, 307, 394
FaiI	YATR	7 cut(s)	15, 37, 113, 207, 267, 305, 392
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	4 cut(s)	205, 265, 303, 390
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	238, 285
Fsp4HI	GCNGC	2 cut(s)	238, 285
FspBI	CTAG	3 cut(s)	147, 273, 386
GluI	GCNGC	2 cut(s)	238, 285
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	3 cut(s)	50, 125, 179
Hin1II	CATG	4 cut(s)	209, 269, 307, 394
HinfI	GANTC	3 cut(s)	142, 329, 472
HpaII	CCGG	3 cut(s)	50, 125, 179
HphI	GGTGA	5 cut(s)	99, 114, 178, 323, 419
Hpy166II	GTNNAC	2 cut(s)	37, 100
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	2 cut(s)	37, 100
HpyAV	CCTTC	3 cut(s)	22, 145, 302
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	100, 265, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	209, 269, 307, 394
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	63, 138, 192, 441
Lsp1109I	GCAGC	1 cut(s)	249
MaeI	CTAG	3 cut(s)	147, 273, 386
MaeIII	GTNAC	1 cut(s)	120
MboII	GAAGA	3 cut(s)	55, 127, 368
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	5 cut(s)	161, 182, 279, 365, 422
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	39, 148, 190, 349
MseI	TTAA	2 cut(s)	90, 324
MslI	CAYNNNNRTG	2 cut(s)	191, 260
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	3 cut(s)	50, 125, 179
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	51
NlaIII	CATG	4 cut(s)	209, 269, 307, 394
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	269
OliI	CACNNNNGTG	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	329, 472
PkrI	GCNGC	2 cut(s)	239, 286
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	382, 454
RsaNI	GTAC	2 cut(s)	381, 453
RseI	CAYNNNNRTG	2 cut(s)	191, 260
SaqAI	TTAA	2 cut(s)	90, 324
SatI	GCNGC	2 cut(s)	238, 285
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	25, 90, 96, 112, 138, 242, 313, 360
SmiMI	CAYNNNNRTG	2 cut(s)	191, 260
SmlI	CTYRAG	2 cut(s)	89, 137
SmoI	CTYRAG	2 cut(s)	89, 137
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	5 cut(s)	161, 182, 279, 365, 422
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	3 cut(s)	147, 273, 386
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	360
TasI	AATT	5 cut(s)	161, 182, 279, 365, 422
TatI	WGTACW	1 cut(s)	452
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	329, 472
Tru1I	TTAA	2 cut(s)	90, 324
Tru9I	TTAA	2 cut(s)	90, 324
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	128, 194, 407
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	1 cut(s)	193
Vha464I	CTTAAG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmaJI	CCTAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	147, 273, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.