Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Forward (+)

35189731 .. 35192680

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0245600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCAAGAAGAAGGGATCCTTCTTTCTTCAAGATTCTTCTGGGGGATCACTTCTCTCACAAGTTGATAATTCCTGGAACTTTTCTCAAACATTTTGATGGGAATGTGCCTGAACAGTTTCGTCTTCAAACCCCAGCTAAAACTTGGCTTGTTGATGTGGAAAAGGTTGATCATAAGTACTATTTCCAAAAGGGTTGGAACGAATTTGTGTGTGAAAATGGCTTAAAGGTTAAGGAAATTCTAGTTTTTCATTATACTGGAAATTCAGACTTCTCTGTCGACATATATGGAAAAAATACTATCAAAAAGGTATTTGTAAAAGAAAGTCATGCCTTCCCGCGATCAAAAGATGTTGGCATCCCCACAGATATTGACTATCCTATGGAAGAAGCTGATGAAGATGATGATCCGTCTGTTGAAATATTGGATGATGTTGCACCATACCCAACAAGTAGAGGAGAGAAATATCAGATATCAAGTCCTCTGCCTCACATTGATTATGATCTTGACATTCAAGATAACGATGAGAATAAGCATGGAAGTTATAAAAATGAAGAAGATGAAAATGAGGAAGATGTTGATAATGAAGATGAGGATGAACATGAAAGTGAGGAAGAAGATGGAGATGAAAGTCTGAGTGAAGAAGAAAATGAAACTGCGGAAGATGTTGATTTTGGAGATGAGGATCAAAATGAAAGTGAAGAAGAAAATGAAAGTGAAGATGAGGATCACAATGATGATGGTGACGGTGACGATGACGGCTCTATTGAAATCTTGAGCGAAAAACCACCATGCTCGAAAACAAGAGATGCAGGTGGCTCTTCCAGAACTGAAAGTTTCCGAAAACCTGAGATACCTAAGAAGATGAATCTAGCTATGGCAGTTGGAAAGCATAATGCTCTTCAGAGAGCTCTTGATTTTAAATCTAACTCTGTAAATCCTTGTCTTGTGCTTCCCATGCGTGCCTCTTATGCCCGTGGAAGTTACTTGAATTTTCCATTTGACTTTGCCAAGAGATATCTTAGGAAGCAGCCTAGTAACGTCACTTTTCTGGCCGATGGTGTATCTTGGCCTGTCAAGTTCCATTATCCCCAAAACCAAACCAGAGCAATGGCTGGCTGGTCTGCATTTGCGCGAGTCAATAAATTGAAGGAGAGTGATGTGTGTGTCTTTGTGTTGACTGACGACATCAAATTTGTATTTAGTGTCGCGATTTTCCGCATTACAGGTGCTGCAAATTGCACCTTACCATCACCAGGACGAAGGCAAACTGCCACAGCTCAATTGAAATCGAAAAACAACAAGAGAAAGCCGGATAGAAGAAGTAACAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

445

Amino Acids

50.82

Weight (kDa)

4.74

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 98	2e-14	B3 DNA binding domain
B3	PF02362	323 - 407	7.1e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AarI	CACCTGC	1 cut(s)	803
AasI	GACNNNNNNGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	803
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	3 cut(s)	340, 1135, 1211
AciI	CCGC	3 cut(s)	338, 659, 1219
AclWI	GGATC	6 cut(s)	11, 24, 54, 401, 693, 735
AcoI	YGGCCR	1 cut(s)	1053
AcsI	RAATTY	5 cut(s)	203, 237, 262, 991, 1193
AcuI	CTGAAG	1 cut(s)	887
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	1256
AgsI	TTSAA	8 cut(s)	31, 128, 419, 515, 770, 991, 1150, 1288
AjnI	CCWGG	2 cut(s)	73, 1255
AluBI	AGCT	5 cut(s)	137, 392, 875, 911, 1280
AluI	AGCT	5 cut(s)	137, 392, 875, 911, 1280
Alw21I	GWGCWC	1 cut(s)	913
AlwI	GGATC	6 cut(s)	11, 24, 54, 401, 693, 735
AlwNI	CAGNNNCTG	2 cut(s)	1232, 1335
AoxI	GGCC	2 cut(s)	1053, 1070
ApeKI	GCWGC	2 cut(s)	1030, 1232
ApoI	RAATTY	5 cut(s)	203, 237, 262, 991, 1193
ArsI	GACNNNNNNTTYG	2 cut(s)	1178, 1210
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	1135
AsuHPI	GGTGA	3 cut(s)	755, 761, 1245
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	913
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	2 cut(s)	1042, 1219
BccI	CCATC	5 cut(s)	92, 614, 734, 1052, 1258
BceAI	ACGGC	1 cut(s)	775
BciT130I	CCWGG	2 cut(s)	75, 1257
BclI	TGATCA	1 cut(s)	169
BfaI	CTAG	3 cut(s)	242, 872, 1035
BfuAI	ACCTGC	1 cut(s)	803
BisI	GCNGC	2 cut(s)	1031, 1233
BlsI	GCNGC	2 cut(s)	1032, 1234
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	75, 1257
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	75, 1257
BmsI	GCATC	2 cut(s)	366, 799
BpiI	GAAGAC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	796
BsaBI	GATNNNNATC	4 cut(s)	405, 501, 684, 726
BsaJI	CCNNGG	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	1 cut(s)	1256
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	4 cut(s)	405, 501, 684, 726
BseBI	CCWGG	2 cut(s)	75, 1257
BseDI	CCNNGG	1 cut(s)	976
BseGI	GGATG	3 cut(s)	357, 433, 601
BseJI	GATNNNNATC	4 cut(s)	405, 501, 684, 726
BseLI	CCNNNNNNNGG	1 cut(s)	1256
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	2 cut(s)	626, 840
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	1042, 1219
BseYI	CCCAGC	1 cut(s)	133
Bsh1236I	CGCG	3 cut(s)	340, 1135, 1211
BshFI	GGCC	2 cut(s)	1055, 1072
BsiHKAI	GWGCWC	1 cut(s)	913
BsiSI	CCGG	1 cut(s)	1313
BslI	CCNNNNNNNGG	1 cut(s)	1256
BsnI	GGCC	2 cut(s)	1055, 1072
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
Bsp68I	TCGCGA	1 cut(s)	1211
BspACI	CCGC	3 cut(s)	338, 659, 1219
BspANI	GGCC	2 cut(s)	1055, 1072
BspCNI	CTCAG	2 cut(s)	627, 841
BspFNI	CGCG	3 cut(s)	340, 1135, 1211
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	803
BspPI	GGATC	6 cut(s)	11, 24, 54, 401, 693, 735
BspQI	GCTCTTC	2 cut(s)	826, 906
BsrDI	GCAATG	1 cut(s)	1116
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	976
BssMI	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
Bst2UI	CCWGG	2 cut(s)	75, 1257
Bst4CI	ACNGT	2 cut(s)	117, 749
Bst6I	CTCTTC	2 cut(s)	826, 906
BstC8I	GCNNGC	2 cut(s)	963, 1117
BstDEI	CTNAG	4 cut(s)	635, 849, 858, 1022
BstDSI	CCRYGG	1 cut(s)	976
BstF5I	GGATG	3 cut(s)	357, 433, 601
BstFNI	CGCG	3 cut(s)	340, 1135, 1211
BstHHI	GCGC	1 cut(s)	1135
BstKTI	GATC	8 cut(s)	19, 49, 172, 344, 409, 505, 688, 730
BstMBI	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	958, 971
BstNI	CCWGG	2 cut(s)	75, 1257
BstSCI	CCNGG	2 cut(s)	73, 1255
BstUI	CGCG	3 cut(s)	340, 1135, 1211
BstV1I	GCAGC	2 cut(s)	1042, 1219
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	1055, 1072
BtgI	CCRYGG	1 cut(s)	976
BtsCI	GGATG	3 cut(s)	357, 433, 601
BtuMI	TCGCGA	1 cut(s)	1211
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	2 cut(s)	963, 1117
CaiI	CAGNNNCTG	2 cut(s)	1232, 1335
CfoI	GCGC	1 cut(s)	1135
Csp6I	GTAC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	352, 387
CviAII	CATG	5 cut(s)	329, 536, 602, 792, 958
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	4 cut(s)	635, 849, 858, 1022
DpnI	GATC	8 cut(s)	18, 48, 171, 343, 408, 504, 687, 729
DpnII	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
DraI	TTTAAA	1 cut(s)	922
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	1053
Eam1104I	CTCTTC	2 cut(s)	826, 906
EarI	CTCTTC	2 cut(s)	826, 906
Ecl136II	GAGCTC	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	913
Eco32I	GATATC	2 cut(s)	474, 1019
Eco53kI	GAGCTC	1 cut(s)	911
Eco57I	CTGAAG	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	911
EcoRII	CCWGG	2 cut(s)	73, 1255
EcoRV	GATATC	2 cut(s)	474, 1019
EcoT38I	GRGCYC	1 cut(s)	913
FaeI	CATG	5 cut(s)	332, 539, 605, 795, 961
FalI	AAGNNNNNCTT	1 cut(s)	36
FatI	CATG	5 cut(s)	328, 535, 601, 791, 957
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	1031, 1233
FokI	GGATG	3 cut(s)	344, 440, 608
FriOI	GRGCYC	1 cut(s)	913
Fsp4HI	GCNGC	2 cut(s)	1031, 1233
FspBI	CTAG	3 cut(s)	242, 872, 1035
GlaI	GCGC	1 cut(s)	1134
GluI	GCNGC	2 cut(s)	1031, 1233
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	1055, 1072
HapII	CCGG	1 cut(s)	1313
HhaI	GCGC	1 cut(s)	1135
Hin1II	CATG	5 cut(s)	332, 539, 605, 795, 961
Hin6I	GCGC	1 cut(s)	1133
HinP1I	GCGC	1 cut(s)	1133
HincII	GTYRAC	2 cut(s)	280, 1179
HindII	GTYRAC	2 cut(s)	280, 1179
HinfI	GANTC	4 cut(s)	34, 868, 1137, 1332
HpaII	CCGG	1 cut(s)	1313
HphI	GGTGA	3 cut(s)	755, 761, 1245
Hpy166II	GTNNAC	2 cut(s)	280, 1179
Hpy188I	TCNGA	6 cut(s)	268, 471, 636, 842, 906, 1337
Hpy188III	TCNNGA	7 cut(s)	31, 506, 515, 775, 825, 914, 1210
Hpy8I	GTNNAC	2 cut(s)	280, 1179
HpyAV	CCTTC	5 cut(s)	6, 30, 343, 1144, 1257
HpyCH4III	ACNGT	2 cut(s)	117, 749
HpyCH4IV	ACGT	1 cut(s)	1041
HpyCH4V	TGCA	5 cut(s)	437, 812, 1127, 1235, 1242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	958, 971
HpyF3I	CTNAG	4 cut(s)	635, 849, 858, 1022
HpySE526I	ACGT	1 cut(s)	1041
Hsp92II	CATG	5 cut(s)	332, 539, 605, 795, 961
HspAI	GCGC	1 cut(s)	1133
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
LguI	GCTCTTC	2 cut(s)	826, 906
Lsp1109I	GCAGC	2 cut(s)	1042, 1219
LweI	GCATC	2 cut(s)	366, 799
MaeI	CTAG	3 cut(s)	242, 872, 1035
MaeII	ACGT	1 cut(s)	1041
MaeIII	GTNAC	6 cut(s)	743, 749, 983, 1037, 1042, 1325
MalI	GATC	8 cut(s)	18, 48, 171, 343, 408, 504, 687, 729
MboI	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
MfeI	CAATTG	1 cut(s)	1283
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	913
MluCI	AATT	9 cut(s)	69, 203, 237, 262, 991, 1145, 1193, 1237, 1283
MlyI	GAGTC	1 cut(s)	1146
MmeI	TCCRAC	2 cut(s)	176, 865
MnlI	CCTC	9 cut(s)	449, 492, 498, 562, 586, 604, 676, 718, 976
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	3 cut(s)	224, 231, 921
MslI	CAYNNNNRTG	3 cut(s)	96, 606, 735
MspI	CCGG	1 cut(s)	1313
MspR9I	CCNGG	2 cut(s)	75, 1257
MunI	CAATTG	1 cut(s)	1283
MvaI	CCWGG	2 cut(s)	75, 1257
MvnI	CGCG	3 cut(s)	340, 1135, 1211
MwoI	GCNNNNNNNGC	2 cut(s)	958, 971
NdeII	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
NlaIII	CATG	5 cut(s)	332, 539, 605, 795, 961
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	3 cut(s)	743, 749, 1042
NruI	TCGCGA	1 cut(s)	1211
PaqCI	CACCTGC	1 cut(s)	803
PciSI	GCTCTTC	2 cut(s)	826, 906
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	34, 868, 1332
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	1032, 1234
PleI	GAGTC	1 cut(s)	1145
PpsI	GAGTC	1 cut(s)	1145
PsiI	TTATAA	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	913
Psp6I	CCWGG	2 cut(s)	73, 1255
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	73, 1255
PspN4I	GGNNCC	1 cut(s)	18
PstNI	CAGNNNCTG	2 cut(s)	1232, 1335
PsuI	RGATCY	1 cut(s)	16
RruI	TCGCGA	1 cut(s)	1211
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	3 cut(s)	96, 606, 735
SacI	GAGCTC	1 cut(s)	913
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	2 cut(s)	826, 906
SaqAI	TTAA	3 cut(s)	224, 231, 921
SatI	GCNGC	2 cut(s)	1031, 1233
Sau3AI	GATC	8 cut(s)	16, 46, 169, 341, 406, 502, 685, 727
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	1146
ScrFI	CCNGG	2 cut(s)	75, 1257
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	2 cut(s)	366, 799
SmiMI	CAYNNNNRTG	3 cut(s)	96, 606, 735
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	9 cut(s)	69, 203, 237, 262, 991, 1145, 1193, 1237, 1283
SsiI	CCGC	3 cut(s)	338, 659, 1219
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	3 cut(s)	242, 872, 1035
SstI	GAGCTC	1 cut(s)	913
StyD4I	CCNGG	2 cut(s)	73, 1255
TaaI	ACNGT	2 cut(s)	117, 749
TaiI	ACGT	1 cut(s)	1044
TaqI	TCGA	3 cut(s)	279, 797, 1292
TasI	AATT	9 cut(s)	69, 203, 237, 262, 991, 1145, 1193, 1237, 1283
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	3 cut(s)	34, 868, 1332
Tru1I	TTAA	3 cut(s)	224, 231, 921
Tru9I	TTAA	3 cut(s)	224, 231, 921
TseFI	GTSAC	3 cut(s)	743, 749, 1042
TseI	GCWGC	2 cut(s)	1030, 1232
Tsp45I	GTSAC	3 cut(s)	743, 749, 1042
TspGWI	ACGGA	1 cut(s)	399
XapI	RAATTY	5 cut(s)	203, 237, 262, 991, 1193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	3 cut(s)	242, 872, 1035
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.