Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Reverse (-)

9843093 .. 9845564

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATGATGAAGTCGGTTGATGTTGAAGGTGTTATGGTTGATTGCTGGTGGGGAATTGTAGAGGCACACAGTCGGCAGGTATATAATTGGAGTAGCTACAAGAAACTATTCCAAATTGTGCGCGTTCTTAACCTTAAGTTACAGGTCGTGATGTCATTCCACGAGTGTGGAGGCAATGTCGGGGATGATGTACATATCCCACTTCCTCACTGGGTGACAGAAATTGGCCAAAAGAATCCTGATTTATATTTTACTAATAAAGAAGGGAAACGCAACACTGAATGTCTCACATGGGGAATTGATAAAGAGCGGGTTTTAAGAGGCCGCACTGCTGTTGAGGTTTACTTCGACTACATGAGGAGCTTCAGAGTTGAATTTGACGAGTTTTTTGAGGAATTAATAATATCAGAATTTGAAGTTGGATTAGGTTTGTGTGGAGAGCTACGGTATCCTTCTTATCCTGAACAGCATGGTTGGAAATATCCTGGTATTGGTGAATTCCAGTGTTATGATCGATACTTGATGAAGAATCTGACGCAGGCTGCAGAAGCAAGGGGTCACTCCTTCTGGGCCAGAGTACCAGATAATGCAGGCTCTTATAATTCCCAAACACATGAGACAGGGTTTTTCCATGACGGAGGTGATTATGATAGCTACTATGGCAGATTCTTTCTTAATTGGTACTCCCGTGTTTTGATTGATCATGGTGACTGTGTACTTGCTCTGGCCAATTTAGCTTTTGAAGGCACACGCATTGCTACAAAGGTATCAGGTATCCATTGGTGGTACAAGACTGCCAGCCATCCTGCTGAATTAACTGCTGGATTTTACAACTCCTGCAGTCGATGGGTATGCACCAATTTCTGCAATGTTAAAAAAGCATGTGGCTGCTCTGAATTTCACATGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

304

Amino Acids

35.15

Weight (kDa)

5.95

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	67
AccBSI	CCGCTC	1 cut(s)	310
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	310, 325
AcoI	YGGCCR	2 cut(s)	226, 726
AcsI	RAATTY	4 cut(s)	374, 410, 497, 896
AcuI	CTGAAG	1 cut(s)	349
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	5 cut(s)	192, 579, 683, 717, 788
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	4 cut(s)	26, 374, 416, 743
AjnI	CCWGG	1 cut(s)	484
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	5 cut(s)	96, 363, 442, 654, 737
AluI	AGCT	5 cut(s)	96, 363, 442, 654, 737
Alw26I	GTCTC	2 cut(s)	290, 611
AoxI	GGCC	4 cut(s)	226, 322, 570, 726
ApeKI	GCWGC	2 cut(s)	542, 888
ApoI	RAATTY	4 cut(s)	374, 410, 497, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AseI	ATTAAT	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	4 cut(s)	226, 506, 653, 719
BaeI	ACNNNNGTAYC	4 cut(s)	673, 706, 750, 783
BalI	TGGCCA	2 cut(s)	228, 728
BauI	CACGAG	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	529, 875
BccI	CCATC	2 cut(s)	810, 840
BcgI	CGANNNNNNTGC	2 cut(s)	834, 868
BciT130I	CCWGG	1 cut(s)	486
BciVI	GTATCC	2 cut(s)	459, 785
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	2 cut(s)	290, 611
BfmI	CTRYAG	2 cut(s)	543, 838
BfrI	CTTAAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	67
BfuI	GTATCC	2 cut(s)	459, 785
BisI	GCNGC	3 cut(s)	325, 543, 889
BlsI	GCNGC	3 cut(s)	326, 544, 890
Bme1390I	CCNGG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	215, 502
Bse3DI	GCAATG	3 cut(s)	181, 753, 874
BseBI	CCWGG	1 cut(s)	486
BseCI	ATCGAT	1 cut(s)	514
BseGI	GGATG	2 cut(s)	190, 802
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	3 cut(s)	181, 753, 874
BseNI	ACTGG	2 cut(s)	215, 502
BseRI	GAGGAG	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	529, 875
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	228, 324, 572, 728
BshVI	ATCGAT	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	290, 611
BsnI	GGCC	4 cut(s)	228, 324, 572, 728
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	511, 700
BspACI	CCGC	2 cut(s)	310, 325
BspANI	GGCC	4 cut(s)	228, 324, 572, 728
BspDI	ATCGAT	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	123
BspMAI	CTGCAG	2 cut(s)	547, 842
BspMI	ACCTGC	1 cut(s)	67
BspTI	CTTAAG	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	310
BsrDI	GCAATG	3 cut(s)	181, 753, 874
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	215, 502
BssMI	GATC	2 cut(s)	511, 700
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	3 cut(s)	71, 447, 713
BstAFI	CTTAAG	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	540, 592, 799
BstF5I	GGATG	2 cut(s)	190, 802
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	514, 703
BstMAI	GTCTC	2 cut(s)	290, 611
BstMBI	GATC	2 cut(s)	511, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 660, 734
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	2 cut(s)	885, 907
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	543, 838
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	529, 875
BstXI	CCANNNNNNTGG	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	514
BsuI	GTATCC	2 cut(s)	459, 785
BsuRI	GGCC	4 cut(s)	228, 324, 572, 728
BsuTUI	ATCGAT	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	190, 802
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	4 cut(s)	208, 276, 327, 509
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	540, 592, 799
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	570
ClaI	ATCGAT	1 cut(s)	514
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	5 cut(s)	191, 578, 682, 716, 787
CviAII	CATG	8 cut(s)	291, 355, 470, 614, 632, 704, 882, 904
CviQI	GTAC	5 cut(s)	191, 578, 682, 716, 787
DpnI	GATC	2 cut(s)	513, 702
DpnII	GATC	2 cut(s)	511, 700
DraIII	CACNNNGTG	1 cut(s)	214
EaeI	YGGCCR	2 cut(s)	226, 726
Eco57I	CTGAAG	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	8 cut(s)	294, 358, 473, 617, 635, 707, 885, 907
FatI	CATG	8 cut(s)	290, 354, 469, 613, 631, 703, 881, 903
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	325, 543, 889
FokI	GGATG	2 cut(s)	197, 789
Fsp4HI	GCNGC	3 cut(s)	325, 543, 889
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	325, 543, 889
HaeIII	GGCC	4 cut(s)	228, 324, 572, 728
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	8 cut(s)	294, 358, 473, 617, 635, 707, 885, 907
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	235, 529, 666
HphI	GGTGA	4 cut(s)	226, 506, 653, 719
Hpy166II	GTNNAC	2 cut(s)	343, 716
Hpy188I	TCNGA	4 cut(s)	368, 409, 534, 895
Hpy188III	TCNNGA	3 cut(s)	148, 239, 461
Hpy8I	GTNNAC	2 cut(s)	343, 716
HpyAV	CCTTC	5 cut(s)	20, 257, 462, 574, 737
HpyCH4III	ACNGT	3 cut(s)	71, 447, 713
HpyCH4V	TGCA	5 cut(s)	545, 590, 840, 855, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 660, 734
Hsp92II	CATG	8 cut(s)	294, 358, 473, 617, 635, 707, 885, 907
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	511, 700
LmnI	GCTCC	1 cut(s)	360
Lsp1109I	GCAGC	2 cut(s)	529, 875
MaeIII	GTNAC	4 cut(s)	138, 214, 557, 707
MalI	GATC	2 cut(s)	513, 702
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	2 cut(s)	511, 700
MboII	GAAGA	1 cut(s)	538
MlsI	TGGCCA	2 cut(s)	228, 728
MluNI	TGGCCA	2 cut(s)	228, 728
MmeI	TCCRAC	2 cut(s)	400, 455
MnlI	CCTC	8 cut(s)	55, 164, 216, 314, 331, 351, 385, 632
Mox20I	TGGCCA	2 cut(s)	228, 728
MroXI	GAANNNNTTC	1 cut(s)	107
MscI	TGGCCA	2 cut(s)	228, 728
MseI	TTAA	7 cut(s)	129, 135, 317, 398, 675, 815, 873
MslI	CAYNNNNRTG	1 cut(s)	165
Msp20I	TGGCCA	2 cut(s)	228, 728
MspCI	CTTAAG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	548, 660, 734
NdeII	GATC	2 cut(s)	511, 700
NlaIII	CATG	8 cut(s)	294, 358, 473, 617, 635, 707, 885, 907
NmuCI	GTSAC	3 cut(s)	214, 557, 707
NspI	RCATGY	2 cut(s)	885, 907
OliI	CACNNNNGTG	1 cut(s)	165
PciI	ACATGT	1 cut(s)	903
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	235, 529, 666
PkrI	GCNGC	3 cut(s)	326, 544, 890
PscI	ACATGT	1 cut(s)	903
PshBI	ATTAAT	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	570
PstI	CTGCAG	2 cut(s)	547, 842
RsaI	GTAC	5 cut(s)	192, 579, 683, 717, 788
RsaNI	GTAC	5 cut(s)	191, 578, 682, 716, 787
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	7 cut(s)	129, 135, 317, 398, 675, 815, 873
SatI	GCNGC	3 cut(s)	325, 543, 889
Sau3AI	GATC	2 cut(s)	511, 700
Sau96I	GGNCC	1 cut(s)	570
ScrFI	CCNGG	1 cut(s)	486
SfcI	CTRYAG	2 cut(s)	543, 838
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SsiI	CCGC	2 cut(s)	310, 325
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	71, 447, 713
TaqI	TCGA	3 cut(s)	348, 514, 844
TatI	WGTACW	2 cut(s)	190, 715
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	3 cut(s)	235, 529, 666
Tru1I	TTAA	7 cut(s)	129, 135, 317, 398, 675, 815, 873
Tru9I	TTAA	7 cut(s)	129, 135, 317, 398, 675, 815, 873
TscAI	CASTG	4 cut(s)	215, 283, 334, 509
TseFI	GTSAC	3 cut(s)	214, 557, 707
TseI	GCWGC	2 cut(s)	542, 888
Tsp45I	GTSAC	3 cut(s)	214, 557, 707
TspDTI	ATGAA	2 cut(s)	23, 539
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	4 cut(s)	215, 283, 334, 509
Vha464I	CTTAAG	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	398
XapI	RAATTY	4 cut(s)	374, 410, 497, 896
XceI	RCATGY	2 cut(s)	885, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.