Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Reverse (-)

9959130 .. 9959982

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAATCAATGCAGGTTTACTTCGACTACATGAGGAGTTTCAGAGTTGAATTTGATGAATTTTTTGAGGAAGGAATAATATCAGAAATTGAAGTTGGATTAGGTCAGTGTGGAGAGCTACGGTATCCTTCTTATCCTGAACAGCATGGTTGGAAATATCCTGGTATTGGTGAATTCCAGTGTTATGATCGATACTTGATGAAGAATCTGACGCAGGCTGCAGAAGCAAGGGGCCACTCCTTCTGGGCCAGAGTACCAGATAATGCAGGCTCTTATAATTCCCAACCACATGAGACAGGGTTTTTTCGTGACGGAGGTGATTATGATAGCTACTATGGCAGATTCTTTCTTAATTGGTACTCCCGTGTTTTGATTGATCATGGTGACCGTGTACTTGCTCTGGCCAATTTAGCTTTTGAAGGCACACGCATTGCTACAAAGGTATCAGGTATCCACTGGTGGTACAAGACTGCCAGCCATCCTGCTGAATTAACTGCTGGATTTTACAACTCCTGCAATCGTGATGGGTATGCTATGCGCCAATTTCTGCAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

186

Amino Acids

21.59

Weight (kDa)

5.33

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	3 cut(s)	50, 59, 173
AfaI	GTAC	4 cut(s)	255, 359, 393, 464
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	50, 92, 419
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	118, 330, 413
AluI	AGCT	3 cut(s)	118, 330, 413
Alw26I	GTCTC	1 cut(s)	287
AoxI	GGCC	3 cut(s)	232, 246, 402
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	3 cut(s)	50, 59, 173
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	232, 246
AsuHPI	GGTGA	3 cut(s)	182, 329, 395
BaeI	ACNNNNGTAYC	4 cut(s)	349, 382, 426, 459
BalI	TGGCCA	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	486, 518
BciT130I	CCWGG	1 cut(s)	162
BciVI	GTATCC	2 cut(s)	135, 461
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	4
BfuI	GTATCC	2 cut(s)	135, 461
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	232, 246
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	178, 461
Bse3DI	GCAATG	2 cut(s)	429, 557
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	190
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	2 cut(s)	429, 557
BseNI	ACTGG	2 cut(s)	178, 461
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	3 cut(s)	234, 248, 404
BshVI	ATCGAT	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	234, 248, 404
Bsp143I	GATC	2 cut(s)	187, 376
BspANI	GGCC	3 cut(s)	234, 248, 404
BspDI	ATCGAT	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	233
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	429, 557
BsrI	ACTGG	2 cut(s)	178, 461
BssMI	GATC	2 cut(s)	187, 376
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	123, 389
BstC8I	GCNNGC	3 cut(s)	216, 268, 475
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	2 cut(s)	190, 379
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	187, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 336, 410
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	190
BsuI	GTATCC	2 cut(s)	135, 461
BsuRI	GGCC	3 cut(s)	234, 248, 404
BsuTUI	ATCGAT	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	113, 185, 454
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	3 cut(s)	216, 268, 475
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	232, 246
ClaI	ATCGAT	1 cut(s)	190
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	4 cut(s)	254, 358, 392, 463
CviAII	CATG	4 cut(s)	31, 146, 290, 380
CviJI	RGCY	9 cut(s)	118, 218, 234, 248, 270, 330, 404, 413, 477
CviKI_1	RGCY	9 cut(s)	118, 218, 234, 248, 270, 330, 404, 413, 477
CviQI	GTAC	4 cut(s)	254, 358, 392, 463
DpnI	GATC	2 cut(s)	189, 378
DpnII	GATC	2 cut(s)	187, 376
EaeI	YGGCCR	1 cut(s)	402
Eco91I	GGTNACC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	34, 149, 293, 383
FatI	CATG	4 cut(s)	30, 145, 289, 379
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	219
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	234, 248, 404
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	34, 149, 293, 383
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	5, 205, 342
HphI	GGTGA	3 cut(s)	182, 329, 395
Hpy166II	GTNNAC	2 cut(s)	19, 392
Hpy188I	TCNGA	3 cut(s)	44, 85, 210
Hpy188III	TCNNGA	3 cut(s)	137, 308, 521
Hpy8I	GTNNAC	2 cut(s)	19, 392
HpyAV	CCTTC	4 cut(s)	65, 138, 250, 413
HpyCH4III	ACNGT	2 cut(s)	123, 389
HpyCH4V	TGCA	5 cut(s)	13, 221, 266, 516, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 336, 410
Hsp92II	CATG	4 cut(s)	34, 149, 293, 383
HspAI	GCGC	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	187, 376
Lsp1109I	GCAGC	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	308, 383
MalI	GATC	2 cut(s)	189, 378
MboI	GATC	2 cut(s)	187, 376
MboII	GAAGA	1 cut(s)	214
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	9 cut(s)	50, 59, 87, 173, 277, 352, 406, 488, 542
MluNI	TGGCCA	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	76, 131
MnlI	CCTC	3 cut(s)	27, 61, 308
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	3 cut(s)	351, 491, 556
Msp20I	TGGCCA	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	224, 336, 410
NdeII	GATC	2 cut(s)	187, 376
NlaIII	CATG	4 cut(s)	34, 149, 293, 383
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	308, 383
PfeI	GAWTC	3 cut(s)	5, 205, 342
PkrI	GCNGC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	232, 246
PstI	CTGCAG	1 cut(s)	223
RsaI	GTAC	4 cut(s)	255, 359, 393, 464
RsaNI	GTAC	4 cut(s)	254, 358, 392, 463
SaqAI	TTAA	3 cut(s)	351, 491, 556
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	187, 376
Sau96I	GGNCC	2 cut(s)	232, 246
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	8 cut(s)	18, 106, 120, 319, 332, 415, 444, 451
SfcI	CTRYAG	1 cut(s)	219
Sse9I	AATT	9 cut(s)	50, 59, 87, 173, 277, 352, 406, 488, 542
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	123, 389
TaqI	TCGA	2 cut(s)	24, 190
TasI	AATT	9 cut(s)	50, 59, 87, 173, 277, 352, 406, 488, 542
TatI	WGTACW	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	5, 205, 342
Tru1I	TTAA	3 cut(s)	351, 491, 556
Tru9I	TTAA	3 cut(s)	351, 491, 556
TscAI	CASTG	3 cut(s)	113, 185, 461
TseFI	GTSAC	2 cut(s)	308, 383
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	2 cut(s)	308, 383
TspDTI	ATGAA	2 cut(s)	72, 215
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	113, 185, 461
XapI	RAATTY	3 cut(s)	50, 59, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.