Rh1DG255100

Glycosyl hydrolase family 14

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
46857084 .. 46861334
4251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG255100.1

Sequence Viewer

Length: 1173 bp
ATGGCACTGCCCTCACTTCAACTATTCCATTGCTTGACGCCGCGGACACCCAGTAATGGTTGCAAAACGACAATGGCTACGTTGTCGTCGGCCGGTGGGAAGACCGTGCTGAGGTTCTCTCCGGGGGTTTGGGGATCGGCGGAGTTTGATTCGTGCCGGTTGAGGGTGGTGGGTGGTGGAAAGTATCGGACTTTGGCGGTGGTGAGTGAGGAGGGGACTGAGGTGGAGAATGGTGGTGACGAGCAGGTTGAAGAGTTGGGACAAAAGGTTCCGGAGCGTGATTTTACTGGGACTCCTTATGTTCCTATATATGTGATGCTACCGTTGGGTGTCATCAATATGAATAGTGAGCTAGTTGAGCCAGAAGTTCTGATGGATCAACTGCGGGTACTGAAGTCCGTTGGTGTTGATGGAGTTATGGTTGATTGCTGGTGGGGAATAGTTGAGGCGCATAATCCACAAGCATATAATTGGAGTGGCTACAAGAAACTCTTCCAGATTGTGCGTGATCTGAACCTTAAGTTACAGGTTGTAATGTCATTTCATGAATGTGGAGGCAATGTTGGGGATGATGTACATATCCCACTTCCTCACTGGGTGACAGAAATTGGTCAAAAAAATCCTGATATATATTTTACTAATAGAGAAGGGCAACGGAATGTGGAATGCCTCACGTGGGGAATTGATAAGGAGCGTGTCTTAAGAGGCCGGACTGCTGTTGAGGTTTACTTCGATTACATGAGGAGCTTCAGGGTCGAATTTGATGAATTTTTTGCGGAAGGAATAATCTCAGAGATTGAAGTGGGTTTAGGTCCTTGCGGAGAGTTACGGTATCCTTCTTATCCATCACAGCATGGTTGGAGATATCCCGGTATTGGTGAATTTCAGTGTTATGATCGGTACTTGATGGAGAATCTGAGAAAGGCTGCAGAAGCAAGGGGGCACTCCTTCTGGGCCAGAGCACCGGATAATGCTGGTTCTTACAATTCCCAACCACAAGACACAGGGTTTTTCCGCGACGGAGGTGATTATGATAGCTACTATGGCAGATTCTTCCTTAATTGGTATTCCAATGTTTTGGTGGATCATGGTGATCGTGTACTTTCTCTGGCCAATTTAGCTTTTGAAGGCAGTTGCATTGCTGCAAAGGTGAGTGACTTTCTTGGAGATTAG

Protein Analysis

390

Amino Acids

43.87

Weight (kDa)

5.01

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 104 - 385 1.4e-97 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccII CGCG 2 cut(s) 43, 1017
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 8 cut(s) 41, 43, 140, 197, 385, 776, 819, 1015
AclWI GGATC 3 cut(s) 142, 384, 1092
AcoI YGGCCR 2 cut(s) 90, 1110
AcsI RAATTY 3 cut(s) 758, 767, 881
AcuI CTGAAG 2 cut(s) 413, 733
AcvI CACGTG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 38
AdeI CACNNNGTG 1 cut(s) 598
AfaI GTAC 4 cut(s) 390, 576, 902, 1101
AfiI CCNNNNNNNGG 5 cut(s) 56, 111, 163, 676, 875
AflII CTTAAG 2 cut(s) 518, 700
AgsI TTSAA 4 cut(s) 20, 251, 800, 1127
AloI GAACNNNNNNTCC 2 cut(s) 252, 284
AluBI AGCT 4 cut(s) 352, 747, 1038, 1121
AluI AGCT 4 cut(s) 352, 747, 1038, 1121
Alw21I GWGCWC 1 cut(s) 964
AlwI GGATC 3 cut(s) 142, 384, 1092
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 4 cut(s) 90, 706, 954, 1110
ApeKI GCWGC 2 cut(s) 926, 1142
ApoI RAATTY 3 cut(s) 758, 767, 881
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 2 cut(s) 812, 954
AsuC2I CCSGG 2 cut(s) 123, 870
AsuHPI GGTGA 7 cut(s) 214, 248, 610, 890, 1037, 1103, 1162
AvaII GGWCC 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 945
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BalI TGGCCA 1 cut(s) 1112
BbrPI CACGTG 1 cut(s) 675
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 964
BbvCI CCTCAGC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 913, 1129
BccI CCATC 4 cut(s) 367, 404, 853, 901
BciVI GTATCC 1 cut(s) 843
BcnI CCSGG 2 cut(s) 123, 870
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 927
BfrI CTTAAG 2 cut(s) 518, 700
BfuAI ACCTGC 1 cut(s) 235
BfuI GTATCC 1 cut(s) 843
BisI GCNGC 3 cut(s) 41, 927, 1143
BlsI GCNGC 3 cut(s) 42, 928, 1144
Bme1390I CCNGG 2 cut(s) 123, 870
Bme18I GGWCC 1 cut(s) 812
BmgT120I GGNCC 2 cut(s) 812, 954
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 123, 870
BmrI ACTGGG 3 cut(s) 45, 297, 604
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 3 cut(s) 45, 297, 604
BpiI GAAGAC 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu10I CCTNAGC 1 cut(s) 110
BpuMI CCSGG 2 cut(s) 123, 870
BsaAI YACGTR 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 41, 122
BsaWI WCCGGW 2 cut(s) 271, 964
BsaXI ACNNNNNCTCC 6 cut(s) 277, 307, 405, 435, 546, 576
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 111, 163, 676, 875
Bse118I RCCGGY 2 cut(s) 92, 156
Bse1I ACTGG 3 cut(s) 51, 292, 599
Bse3DI GCAATG 3 cut(s) 28, 565, 1137
BseAI TCCGGA 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 41, 122
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 5 cut(s) 56, 111, 163, 676, 875
BseMI GCAATG 3 cut(s) 28, 565, 1137
BseMII CTCAG 4 cut(s) 101, 210, 804, 908
BseNI ACTGG 3 cut(s) 51, 292, 599
BseRI GAGGAG 2 cut(s) 224, 757
BseSI GKGCMC 1 cut(s) 945
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 913, 1129
Bsh1236I CGCG 2 cut(s) 43, 1017
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 4 cut(s) 92, 708, 956, 1112
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 964
BsiSI CCGG 7 cut(s) 93, 122, 157, 272, 709, 870, 965
BslFI GGGAC 3 cut(s) 229, 273, 304
BslI CCNNNNNNNGG 5 cut(s) 56, 111, 163, 676, 875
BsmFI GGGAC 3 cut(s) 229, 273, 304
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 4 cut(s) 92, 708, 956, 1112
Bsp1286I GDGCHC 2 cut(s) 945, 964
Bsp13I TCCGGA 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
BspACI CCGC 8 cut(s) 41, 43, 140, 197, 385, 776, 819, 1015
BspANI GGCC 4 cut(s) 92, 708, 956, 1112
BspCNI CTCAG 4 cut(s) 102, 211, 803, 909
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 2 cut(s) 43, 1017
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 3 cut(s) 142, 384, 1092
BspTI CTTAAG 2 cut(s) 518, 700
BsrDI GCAATG 3 cut(s) 28, 565, 1137
BsrFI RCCGGY 2 cut(s) 92, 156
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 3 cut(s) 51, 292, 599
BssAI RCCGGY 2 cut(s) 92, 156
BssECI CCNNGG 2 cut(s) 41, 122
BssMI GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 106, 324, 831
Bst6I CTCTTC 2 cut(s) 246, 497
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 2 cut(s) 518, 700
BstAUI TGTACA 1 cut(s) 574
BstBAI YACGTR 1 cut(s) 675
BstDEI CTNAG 4 cut(s) 110, 219, 790, 917
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 2 cut(s) 43, 1017
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 6 cut(s) 137, 379, 511, 898, 1087, 1096
BstMBI GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 4 cut(s) 358, 932, 1044, 1118
BstSCI CCNGG 2 cut(s) 121, 868
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 945
BstUI CGCG 2 cut(s) 43, 1017
BstV1I GCAGC 2 cut(s) 913, 1129
BstV2I GAAGAC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 1078
BstZI CGGCCG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 4 cut(s) 92, 708, 956, 1112
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 574
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 3 cut(s) 5, 592, 893
BveI ACCTGC 1 cut(s) 235
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 2 cut(s) 92, 156
Cfr13I GGNCC 2 cut(s) 812, 954
Cfr42I CCGCGG 1 cut(s) 44
CseI GACGC 1 cut(s) 46
Csp6I GTAC 4 cut(s) 389, 575, 901, 1100
CviAII CATG 4 cut(s) 545, 739, 854, 1088
CviQI GTAC 4 cut(s) 389, 575, 901, 1100
DdeI CTNAG 4 cut(s) 110, 219, 790, 917
DpnI GATC 6 cut(s) 136, 378, 510, 897, 1086, 1095
DpnII GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
DraIII CACNNNGTG 1 cut(s) 598
EaeI YGGCCR 2 cut(s) 90, 1110
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 246, 497
EarI CTCTTC 2 cut(s) 246, 497
EciI GGCGGA 1 cut(s) 155
EclXI CGGCCG 1 cut(s) 90
Eco32I GATATC 1 cut(s) 866
Eco47I GGWCC 1 cut(s) 812
Eco52I CGGCCG 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 413, 733
Eco72I CACGTG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 812
EcoRV GATATC 1 cut(s) 866
FaeI CATG 4 cut(s) 548, 742, 857, 1091
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 3 cut(s) 229, 273, 304
FatI CATG 4 cut(s) 544, 738, 853, 1087
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 41, 927, 1143
FokI GGATG 1 cut(s) 581
Fsp4HI GCNGC 3 cut(s) 41, 927, 1143
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 450
GluI GCNGC 3 cut(s) 41, 927, 1143
HaeIII GGCC 4 cut(s) 92, 708, 956, 1112
HapII CCGG 7 cut(s) 93, 122, 157, 272, 709, 870, 965
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 4 cut(s) 548, 742, 857, 1091
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 4 cut(s) 149, 292, 913, 1050
HpaII CCGG 7 cut(s) 93, 122, 157, 272, 709, 870, 965
HphI GGTGA 7 cut(s) 214, 248, 610, 890, 1037, 1103, 1162
Hpy166II GTNNAC 2 cut(s) 727, 1100
Hpy188I TCNGA 5 cut(s) 189, 372, 513, 793, 918
Hpy188III TCNNGA 4 cut(s) 272, 496, 545, 623
Hpy8I GTNNAC 2 cut(s) 727, 1100
Hpy99I CGWCG 2 cut(s) 91, 1022
HpyAV CCTTC 5 cut(s) 641, 773, 846, 958, 1121
HpyCH4III ACNGT 3 cut(s) 106, 324, 831
HpyCH4IV ACGT 2 cut(s) 80, 674
HpyCH4V TGCA 4 cut(s) 63, 929, 1137, 1145
HpyF10VI GCNNNNNNNGC 4 cut(s) 358, 932, 1044, 1118
HpyF3I CTNAG 4 cut(s) 110, 219, 790, 917
HpySE526I ACGT 2 cut(s) 80, 674
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 4 cut(s) 548, 742, 857, 1091
HspAI GCGC 1 cut(s) 449
Kpn2I TCCGGA 1 cut(s) 271
KspI CCGCGG 1 cut(s) 44
Kzo9I GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
LmnI GCTCC 3 cut(s) 274, 691, 744
Lsp1109I GCAGC 2 cut(s) 913, 1129
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 353
MaeII ACGT 2 cut(s) 80, 674
MaeIII GTNAC 5 cut(s) 236, 522, 598, 825, 1154
MalI GATC 6 cut(s) 136, 378, 510, 897, 1086, 1095
MboI GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
MboII GAAGA 4 cut(s) 112, 263, 484, 1045
MhlI GDGCHC 2 cut(s) 945, 964
MlsI TGGCCA 1 cut(s) 1112
MluCI AATT 9 cut(s) 469, 606, 681, 758, 767, 881, 985, 1060, 1114
MluNI TGGCCA 1 cut(s) 1112
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 839
Mox20I TGGCCA 1 cut(s) 1112
MroI TCCGGA 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 1112
MseI TTAA 3 cut(s) 519, 701, 1059
MslI CAYNNNNRTG 2 cut(s) 338, 549
Msp20I TGGCCA 1 cut(s) 1112
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 2 cut(s) 518, 700
MspI CCGG 7 cut(s) 93, 122, 157, 272, 709, 870, 965
MspR9I CCNGG 2 cut(s) 123, 870
Mva1269I GAATGC 1 cut(s) 671
MvnI CGCG 2 cut(s) 43, 1017
MwoI GCNNNNNNNGC 4 cut(s) 358, 932, 1044, 1118
NciI CCSGG 2 cut(s) 123, 870
NdeII GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
NlaIII CATG 4 cut(s) 548, 742, 857, 1091
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 236, 598, 1154
PagI TCATGA 1 cut(s) 544
PctI GAATGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 149, 913, 1050
PkrI GCNGC 3 cut(s) 42, 928, 1144
PleI GAGTC 1 cut(s) 286
PmaCI CACGTG 1 cut(s) 675
PmlI CACGTG 1 cut(s) 675
PpsI GAGTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 675
PpuMI RGGWCCY 1 cut(s) 812
Psp5II RGGWCCY 1 cut(s) 812
PspCI CACGTG 1 cut(s) 675
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 812, 954
PspPPI RGGWCCY 1 cut(s) 812
PstI CTGCAG 1 cut(s) 931
RsaI GTAC 4 cut(s) 390, 576, 902, 1101
RsaNI GTAC 4 cut(s) 389, 575, 901, 1100
RseI CAYNNNNRTG 2 cut(s) 338, 549
SacII CCGCGG 1 cut(s) 44
SaqAI TTAA 3 cut(s) 519, 701, 1059
SatI GCNGC 3 cut(s) 41, 927, 1143
Sau3AI GATC 6 cut(s) 134, 376, 508, 895, 1084, 1093
Sau96I GGNCC 2 cut(s) 812, 954
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 123, 870
SduI GDGCHC 2 cut(s) 945, 964
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 927
Sfr303I CCGCGG 1 cut(s) 44
SgrBI CCGCGG 1 cut(s) 44
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 2 cut(s) 338, 549
SmlI CTYRAG 2 cut(s) 518, 700
SmoI CTYRAG 2 cut(s) 518, 700
Sse9I AATT 9 cut(s) 469, 606, 681, 758, 767, 881, 985, 1060, 1114
SsiI CCGC 8 cut(s) 41, 43, 140, 197, 385, 776, 819, 1015
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 121, 868
TaaI ACNGT 3 cut(s) 106, 324, 831
TaiI ACGT 2 cut(s) 83, 677
TaqI TCGA 2 cut(s) 732, 756
TasI AATT 9 cut(s) 469, 606, 681, 758, 767, 881, 985, 1060, 1114
TatI WGTACW 2 cut(s) 574, 1099
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 149, 913, 1050
Tru1I TTAA 3 cut(s) 519, 701, 1059
Tru9I TTAA 3 cut(s) 519, 701, 1059
TscAI CASTG 3 cut(s) 12, 599, 893
TseFI GTSAC 3 cut(s) 236, 598, 1154
TseI GCWGC 2 cut(s) 926, 1142
Tsp45I GTSAC 3 cut(s) 236, 598, 1154
TspDTI ATGAA 4 cut(s) 356, 533, 561, 780
TspGWI ACGGA 3 cut(s) 388, 670, 1035
TspRI CASTG 3 cut(s) 12, 599, 893
Vha464I CTTAAG 2 cut(s) 518, 700
VpaK11BI GGWCC 1 cut(s) 812
XapI RAATTY 3 cut(s) 758, 767, 881
XcmI CCANNNNNNNNNTGG 2 cut(s) 591, 1078
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.