Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Forward (+)

22589803 .. 22603743

Gene Structure 13941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG241900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAATGCGAGTTCGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTCGATGCTTGGTGGGGATTGGTTGAGAAAGACAGACCTTCCAAGTACAACTGGAAAGGTGTGGAGGAAATGTTGGAGACTCATGTAGCCATGCAGGAAGAACGCCCAAACAGGTTTACACCGATCGACTACATGAAGAGCTTCCATGACAGATTCAGAGATTACTTGGGAGACGTTATTGTGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCAGAGAGCAATGGAACATGGAAGTTTCCTGGAATTGGAGAATTTCAATGCTATGACAAGTACATGAAAGCCCTGGAAGCATCAGCAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

141

Amino Acids

16.11

Weight (kDa)

5.22

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 43	3.1e-13	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	60 - 140	9.2e-31	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	237, 326
AfaI	GTAC	2 cut(s)	98, 347
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	25, 242, 332
AjnI	CCWGG	2 cut(s)	313, 357
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	2 cut(s)	192, 423
AluI	AGCT	2 cut(s)	192, 423
Alw26I	GTCTC	2 cut(s)	122, 216
ApoI	RAATTY	2 cut(s)	237, 326
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	254, 407
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	254, 407
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	315, 359
BcoDI	GTCTC	2 cut(s)	122, 216
BfaI	CTAG	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	315, 359
Bme18I	GGWCC	2 cut(s)	254, 407
BmgT120I	GGNCC	2 cut(s)	254, 407
BmiI	GGNNCC	2 cut(s)	255, 409
BmrFI	CCNGG	2 cut(s)	315, 359
BmsI	GCATC	2 cut(s)	46, 374
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	107, 409
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	315, 359
BseDI	CCNNGG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	2 cut(s)	107, 409
Bsh1285I	CGRYCG	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	122, 216
BsmBI	CGTCTC	1 cut(s)	216
BsmI	GAATGC	2 cut(s)	10, 34
Bsp143I	GATC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	255, 409
BspQI	GCTCTTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	107, 409
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	315, 359
Bst6I	CTCTTC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	269
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	2 cut(s)	122, 216
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	2 cut(s)	315, 359
BstSCI	CCNGG	2 cut(s)	313, 357
Cfr13I	GGNCC	2 cut(s)	254, 407
Csp6I	GTAC	2 cut(s)	97, 346
CviAII	CATG	7 cut(s)	134, 142, 184, 197, 303, 349, 413
CviJI	RGCY	5 cut(s)	20, 140, 192, 356, 423
CviKI_1	RGCY	5 cut(s)	20, 140, 192, 356, 423
CviQI	GTAC	2 cut(s)	97, 346
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	254, 407
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	313, 357
EcoRV	GATATC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	7 cut(s)	137, 145, 187, 200, 306, 352, 416
FatI	CATG	7 cut(s)	133, 141, 183, 196, 302, 348, 412
FspBI	CTAG	1 cut(s)	424
Hin1II	CATG	7 cut(s)	137, 145, 187, 200, 306, 352, 416
HinfI	GANTC	3 cut(s)	130, 204, 416
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	168, 266
Hpy188I	TCNGA	2 cut(s)	209, 272
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	2 cut(s)	168, 266
HpyAV	CCTTC	3 cut(s)	35, 99, 393
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	32, 145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	137, 145, 187, 200, 306, 352, 416
Kzo9I	GATC	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	182
LweI	GCATC	2 cut(s)	46, 374
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	37, 161, 199
MluCI	AATT	3 cut(s)	237, 318, 326
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	2 cut(s)	109, 367
MroXI	GAANNNNTTC	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	315, 359
Mva1269I	GAATGC	2 cut(s)	10, 34
MvaI	CCWGG	2 cut(s)	315, 359
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	7 cut(s)	137, 145, 187, 200, 306, 352, 416
NlaIV	GGNNCC	2 cut(s)	255, 409
PciSI	GCTCTTC	1 cut(s)	182
PctI	GAATGC	2 cut(s)	10, 34
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	204, 416
PfoI	TCCNGGA	1 cut(s)	313
Ple19I	CGATCG	1 cut(s)	177
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	313, 357
PspGI	CCWGG	2 cut(s)	313, 357
PspN4I	GGNNCC	2 cut(s)	255, 409
PspPI	GGNCC	2 cut(s)	254, 407
PspPPI	RGGWCCY	1 cut(s)	254
PvuI	CGATCG	1 cut(s)	177
RsaI	GTAC	2 cut(s)	98, 347
RsaNI	GTAC	2 cut(s)	97, 346
SapI	GCTCTTC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	2 cut(s)	254, 407
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	315, 359
SetI	ASST	6 cut(s)	91, 112, 167, 194, 228, 425
SfaNI	GCATC	2 cut(s)	46, 374
SinI	GGWCC	2 cut(s)	254, 407
Sse9I	AATT	3 cut(s)	237, 318, 326
SspMI	CTAG	1 cut(s)	424
StyD4I	CCNGG	2 cut(s)	313, 357
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	14, 54, 177
TasI	AATT	3 cut(s)	237, 318, 326
TatI	WGTACW	2 cut(s)	96, 345
TfiI	GAWTC	2 cut(s)	204, 416
TspDTI	ATGAA	3 cut(s)	17, 200, 365
VpaK11BI	GGWCC	2 cut(s)	254, 407
XapI	RAATTY	2 cut(s)	237, 326
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.