Rmu_co8509927.1_g000001

Glycosyl hydrolase family 14

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8509927.1
Physical Location & Seq
Forward (+)
1 .. 3449
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8509927.1_g000001.1.cds

Sequence Viewer

Length: 1394 bp
ttccggagcgtgattttactgggactccttatgttcctatatatgtgatgctaccgttgggtgtcatcaatatgaatagtgagctagttgagcctgaagttctgatggatcaactgcgggtactgaagtcggttggtgttgatggtgttatggttgattgctggtggggaatagttgaggcacataatccacaggcatataattggagtggctacaagaaactcttccagattgtgcgtgatctgaaccttaagttacaggttgttatgtcatttcatgaatgtggaggcaatgttggggatgatgtacatatcccacttcctcactgggtgacagaaattggtcaaaaaaatcctgatatatattttactaatagagaagggcaacggaatgtggaatgcctcacgtggggaattgataaggagcgagtcttaagaggccggactgctgttgaggtttacttcgattacatgaggagcttcagggtcgaatttgatgaattttttgcggaaggaataatctcagagattgaagttggtttaggtccttgcggagagttacggtatccttcttatccagcacagcatggttggagatatcccggtattggtgaatttcagtgttatgatcggtacttgatggagaatctgagaaaggctgcagaagcaagggggcactccttctgggccagagcaccggataatgctggttcttacaattcccaaccacaagacacagggtttttccgcgatggaggtgattatgatagctactatggcagattcttccttaattggtattccaatgttttggtggatcatggtgatcgtgtactttctctggccaatttagcttttgaaggcagttgcattgctgcaaagctatcaggtattcattggtggtacaagactgccagccatgctgctgaattaactgctggattttataatccatgcaatcgtgatgggtatgctccaattgcagcgatgtttaaaaagcatgcggctgccttgaattttacgtgtgttgaattgcgcacatcaaaccagcacgaggactttccagaagcaatggcagaccctgagggattagtttggcaggtgctgaatgctgcatgggatgcgaacattccagttgctagtgagaatgctcttaattgccatgatagagaaggctacaacaagatattggaaaatgctaaaccactgaatgatccagatggtaggcatttgtcggcatttacctacctcaggttaagcccagttctcctggagaagcataacttcgtggagtttgaacgatttgtcaagaaaatgcatggagaagctgctccagatctccagattaattcaaatgaagagcacaccgaggactcatctgcaattcaacagtag

Protein Analysis

463

Amino Acids

52.75

Weight (kDa)

5.1

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 947
AarI CACCTGC 1 cut(s) 1089
Acc16I TGCGCA 1 cut(s) 1036
Acc36I ACCTGC 1 cut(s) 1089
AccII CGCG 1 cut(s) 749
AccIII TCCGGA 1 cut(s) 3
AciI CCGC 5 cut(s) 117, 508, 551, 747, 1003
AclWI GGATC 3 cut(s) 116, 824, 1207
AcoI YGGCCR 1 cut(s) 842
AcsI RAATTY 4 cut(s) 490, 499, 613, 1014
AcuI CTGAAG 3 cut(s) 116, 145, 465
AcvI CACGTG 1 cut(s) 407
AdeI CACNNNGTG 1 cut(s) 330
AfaI GTAC 5 cut(s) 122, 308, 634, 833, 904
AfiI CCNNNNNNNGG 4 cut(s) 408, 607, 1053, 1250
AflII CTTAAG 2 cut(s) 250, 432
AflIII ACRYGT 1 cut(s) 1021
AgsI TTSAA 7 cut(s) 532, 859, 1014, 1030, 1297, 1352, 1387
AjnI CCWGG 1 cut(s) 1268
AluBI AGCT 6 cut(s) 84, 479, 770, 853, 882, 1327
AluI AGCT 6 cut(s) 84, 479, 770, 853, 882, 1327
Alw21I GWGCWC 2 cut(s) 696, 1364
AlwI GGATC 3 cut(s) 116, 824, 1207
AlwNI CAGNNNCTG 2 cut(s) 1081, 1104
Aor13HI TCCGGA 1 cut(s) 3
AoxI GGCC 3 cut(s) 438, 686, 842
ApeKI GCWGC 7 cut(s) 658, 874, 922, 982, 1006, 1111, 1327
ApoI RAATTY 4 cut(s) 490, 499, 613, 1014
AseI ATTAAT 1 cut(s) 1346
Asp700I GAANNNNTTC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 1037
AspS9I GGNCC 2 cut(s) 544, 686
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 4 cut(s) 342, 622, 769, 835
AvaII GGWCC 1 cut(s) 544
AxyI CCTNAGG 2 cut(s) 1082, 1249
BaeGI GKGCMC 1 cut(s) 677
BaeI ACNNNNGTAYC 2 cut(s) 112, 145
BalI TGGCCA 1 cut(s) 844
BauI CACGAG 1 cut(s) 1051
BbrPI CACGTG 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 696, 1364
BbvI GCAGC 7 cut(s) 645, 861, 909, 993, 994, 1098, 1314
BccI CCATC 6 cut(s) 99, 136, 633, 745, 958, 1213
BciT130I CCWGG 1 cut(s) 1270
BciVI GTATCC 1 cut(s) 575
BcnI CCSGG 1 cut(s) 602
BfaI CTAG 2 cut(s) 85, 1139
BfmI CTRYAG 1 cut(s) 659
BfrI CTTAAG 2 cut(s) 250, 432
BfuAI ACCTGC 1 cut(s) 1089
BfuI GTATCC 1 cut(s) 575
BglII AGATCT 1 cut(s) 1335
BisI GCNGC 8 cut(s) 659, 875, 923, 983, 1004, 1007, 1112, 1328
BlsI GCNGC 8 cut(s) 660, 876, 924, 984, 1005, 1008, 1113, 1329
Bme1390I CCNGG 2 cut(s) 602, 1270
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 2 cut(s) 544, 686
BmrFI CCNGG 2 cut(s) 602, 1270
BmrI ACTGGG 3 cut(s) 29, 336, 1255
BmsI GCATC 2 cut(s) 38, 1110
BmuI ACTGGG 3 cut(s) 29, 336, 1255
BpmI CTGGAG 3 cut(s) 1291, 1316, 1324
BpuMI CCSGG 1 cut(s) 602
BsaAI YACGTR 2 cut(s) 407, 1022
BsaJI CCNNGG 1 cut(s) 1367
BsaWI WCCGGW 2 cut(s) 3, 696
BsaXI ACNNNNNCTCC 4 cut(s) 9, 39, 278, 308
Bsc4I CCNNNNNNNGG 4 cut(s) 408, 607, 1053, 1250
Bse1I ACTGG 4 cut(s) 24, 331, 1132, 1261
Bse21I CCTNAGG 2 cut(s) 1082, 1249
Bse3DI GCAATG 3 cut(s) 297, 869, 1076
BseAI TCCGGA 1 cut(s) 3
BseBI CCWGG 1 cut(s) 1270
BseDI CCNNGG 1 cut(s) 1367
BseGI GGATG 2 cut(s) 306, 1125
BseLI CCNNNNNNNGG 4 cut(s) 408, 607, 1053, 1250
BseMI GCAATG 3 cut(s) 297, 869, 1076
BseMII CTCAG 4 cut(s) 536, 640, 1073, 1263
BseNI ACTGG 4 cut(s) 24, 331, 1132, 1261
BseRI GAGGAG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 7 cut(s) 645, 861, 909, 993, 994, 1098, 1314
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 3 cut(s) 440, 688, 844
BsiHKAI GWGCWC 2 cut(s) 696, 1364
BsiSI CCGG 4 cut(s) 4, 441, 602, 697
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 4 cut(s) 408, 607, 1053, 1250
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 3 cut(s) 403, 1113, 1152
BsnI GGCC 3 cut(s) 440, 688, 844
Bsp1286I GDGCHC 3 cut(s) 677, 696, 1364
Bsp13I TCCGGA 1 cut(s) 3
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
BspACI CCGC 5 cut(s) 117, 508, 551, 747, 1003
BspANI GGCC 3 cut(s) 440, 688, 844
BspCNI CTCAG 4 cut(s) 535, 641, 1074, 1262
BspEI TCCGGA 1 cut(s) 3
BspFNI CGCG 1 cut(s) 749
BspHI TCATGA 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 663
BspMI ACCTGC 1 cut(s) 1089
BspPI GGATC 3 cut(s) 116, 824, 1207
BspQI GCTCTTC 1 cut(s) 1352
BspTI CTTAAG 2 cut(s) 250, 432
BsrDI GCAATG 3 cut(s) 297, 869, 1076
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 4 cut(s) 24, 331, 1132, 1261
BssECI CCNNGG 1 cut(s) 1367
BssMI GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
BssSI CACGAG 1 cut(s) 1051
Bst2BI CACGAG 1 cut(s) 1051
Bst2UI CCWGG 1 cut(s) 1270
Bst4CI ACNGT 3 cut(s) 56, 563, 1391
Bst6I CTCTTC 2 cut(s) 229, 1352
BstAFI CTTAAG 2 cut(s) 250, 432
BstAPI GCANNNNNTGC 1 cut(s) 1120
BstAUI TGTACA 1 cut(s) 306
BstBAI YACGTR 2 cut(s) 407, 1022
BstC8I GCNNGC 2 cut(s) 915, 1001
BstDEI CTNAG 4 cut(s) 522, 649, 1082, 1249
BstENI CCTNNNNNAGG 1 cut(s) 1248
BstF5I GGATG 2 cut(s) 306, 1125
BstFNI CGCG 1 cut(s) 749
BstHHI GCGC 1 cut(s) 1037
BstKTI GATC 7 cut(s) 111, 243, 630, 819, 828, 1215, 1338
BstMBI GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
BstMWI GCNNNNNNNGC 7 cut(s) 90, 664, 776, 850, 919, 979, 1120
BstNI CCWGG 1 cut(s) 1270
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 2 cut(s) 600, 1268
BstSFI CTRYAG 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 677
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 7 cut(s) 645, 861, 909, 993, 994, 1098, 1314
BstX2I RGATCY 1 cut(s) 1335
BstXI CCANNNNNNTGG 1 cut(s) 810
BstYI RGATCY 1 cut(s) 1335
Bsu36I CCTNAGG 2 cut(s) 1082, 1249
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 3 cut(s) 440, 688, 844
BtgZI GCGATG 2 cut(s) 764, 1000
BtsCI GGATG 2 cut(s) 306, 1125
BtsIMutI CAGTG 3 cut(s) 324, 625, 1204
BveI ACCTGC 1 cut(s) 1089
Cac8I GCNNGC 2 cut(s) 915, 1001
CaiI CAGNNNCTG 2 cut(s) 1081, 1104
CciI TCATGA 1 cut(s) 276
CfoI GCGC 1 cut(s) 1037
Cfr13I GGNCC 2 cut(s) 544, 686
Csp6I GTAC 5 cut(s) 121, 307, 633, 832, 903
CviQI GTAC 5 cut(s) 121, 307, 633, 832, 903
DdeI CTNAG 4 cut(s) 522, 649, 1082, 1249
DpnI GATC 7 cut(s) 110, 242, 629, 818, 827, 1214, 1337
DpnII GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
DraI TTTAAA 1 cut(s) 993
DraIII CACNNNGTG 1 cut(s) 330
EaeI YGGCCR 1 cut(s) 842
Eam1104I CTCTTC 2 cut(s) 229, 1352
EarI CTCTTC 2 cut(s) 229, 1352
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 3 cut(s) 116, 145, 465
Eco72I CACGTG 1 cut(s) 407
Eco81I CCTNAGG 2 cut(s) 1082, 1249
EcoNI CCTNNNNNAGG 1 cut(s) 1248
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 1268
EcoRV GATATC 1 cut(s) 598
EcoT22I ATGCAT 1 cut(s) 1319
FalI AAGNNNNNCTT 4 cut(s) 208, 240, 1267, 1299
FaqI GGGAC 1 cut(s) 36
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 8 cut(s) 659, 875, 923, 983, 1004, 1007, 1112, 1328
FokI GGATG 2 cut(s) 313, 1132
Fsp4HI GCNGC 8 cut(s) 659, 875, 923, 983, 1004, 1007, 1112, 1328
FspBI CTAG 2 cut(s) 85, 1139
FspI TGCGCA 1 cut(s) 1036
GlaI GCGC 1 cut(s) 1036
GluI GCNGC 8 cut(s) 659, 875, 923, 983, 1004, 1007, 1112, 1328
GsuI CTGGAG 3 cut(s) 1291, 1316, 1324
HaeIII GGCC 3 cut(s) 440, 688, 844
HapII CCGG 4 cut(s) 4, 441, 602, 697
HhaI GCGC 1 cut(s) 1037
Hin6I GCGC 1 cut(s) 1035
HinP1I GCGC 1 cut(s) 1035
HinfI GANTC 5 cut(s) 24, 428, 645, 782, 1372
HpaII CCGG 4 cut(s) 4, 441, 602, 697
HphI GGTGA 4 cut(s) 342, 622, 769, 835
Hpy166II GTNNAC 2 cut(s) 459, 832
Hpy188I TCNGA 4 cut(s) 104, 245, 525, 650
Hpy8I GTNNAC 2 cut(s) 459, 832
HpyAV CCTTC 6 cut(s) 373, 505, 578, 690, 853, 1165
HpyCH4III ACNGT 3 cut(s) 56, 563, 1391
HpyCH4IV ACGT 2 cut(s) 406, 1021
HpyCH4V TGCA 8 cut(s) 661, 869, 877, 956, 982, 1114, 1317, 1381
HpyF10VI GCNNNNNNNGC 7 cut(s) 90, 664, 776, 850, 919, 979, 1120
HpyF3I CTNAG 4 cut(s) 522, 649, 1082, 1249
HpySE526I ACGT 2 cut(s) 406, 1021
HspAI GCGC 1 cut(s) 1035
Kpn2I TCCGGA 1 cut(s) 3
Kzo9I GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
LguI GCTCTTC 1 cut(s) 1352
LmnI GCTCC 5 cut(s) 6, 423, 476, 978, 1335
Lsp1109I GCAGC 7 cut(s) 645, 861, 909, 993, 994, 1098, 1314
LweI GCATC 2 cut(s) 38, 1110
MaeI CTAG 2 cut(s) 85, 1139
MaeII ACGT 2 cut(s) 406, 1021
MaeIII GTNAC 3 cut(s) 254, 330, 557
MalI GATC 7 cut(s) 110, 242, 629, 818, 827, 1214, 1337
MboI GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
MboII GAAGA 3 cut(s) 216, 777, 1369
MfeI CAATTG 1 cut(s) 977
MflI RGATCY 1 cut(s) 1335
MhlI GDGCHC 3 cut(s) 677, 696, 1364
MlsI TGGCCA 1 cut(s) 844
MluNI TGGCCA 1 cut(s) 844
MlyI GAGTC 3 cut(s) 18, 437, 1366
MmeI TCCRAC 1 cut(s) 571
Mox20I TGGCCA 1 cut(s) 844
Mph1103I ATGCAT 1 cut(s) 1319
MroI TCCGGA 1 cut(s) 3
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 1 cut(s) 844
MseI TTAA 8 cut(s) 251, 433, 791, 931, 992, 1154, 1255, 1346
MslI CAYNNNNRTG 2 cut(s) 70, 281
Msp20I TGGCCA 1 cut(s) 844
MspCI CTTAAG 2 cut(s) 250, 432
MspI CCGG 4 cut(s) 4, 441, 602, 697
MspR9I CCNGG 2 cut(s) 602, 1270
MunI CAATTG 1 cut(s) 977
Mva1269I GAATGC 3 cut(s) 403, 1113, 1152
MvaI CCWGG 1 cut(s) 1270
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 7 cut(s) 90, 664, 776, 850, 919, 979, 1120
NciI CCSGG 1 cut(s) 602
NdeII GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
NmuCI GTSAC 1 cut(s) 330
NsbI TGCGCA 1 cut(s) 1036
NsiI ATGCAT 1 cut(s) 1319
NspI RCATGY 1 cut(s) 1003
PaeI GCATGC 1 cut(s) 1003
PagI TCATGA 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 1089
PciSI GCTCTTC 1 cut(s) 1352
PctI GAATGC 3 cut(s) 403, 1113, 1152
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 645, 782
PfoI TCCNGGA 1 cut(s) 1268
PkrI GCNGC 8 cut(s) 660, 876, 924, 984, 1005, 1008, 1113, 1329
PleI GAGTC 3 cut(s) 18, 436, 1366
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
PpsI GAGTC 3 cut(s) 18, 436, 1366
Ppu21I YACGTR 2 cut(s) 407, 1022
PpuMI RGGWCCY 1 cut(s) 544
PshBI ATTAAT 1 cut(s) 1346
PsiI TTATAA 1 cut(s) 947
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 1268
PspCI CACGTG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 1268
PspPI GGNCC 2 cut(s) 544, 686
PspPPI RGGWCCY 1 cut(s) 544
PstI CTGCAG 1 cut(s) 663
PstNI CAGNNNCTG 2 cut(s) 1081, 1104
PsuI RGATCY 1 cut(s) 1335
RsaI GTAC 5 cut(s) 122, 308, 634, 833, 904
RsaNI GTAC 5 cut(s) 121, 307, 633, 832, 903
RseI CAYNNNNRTG 2 cut(s) 70, 281
SapI GCTCTTC 1 cut(s) 1352
SaqAI TTAA 8 cut(s) 251, 433, 791, 931, 992, 1154, 1255, 1346
SatI GCNGC 8 cut(s) 659, 875, 923, 983, 1004, 1007, 1112, 1328
Sau3AI GATC 7 cut(s) 108, 240, 627, 816, 825, 1212, 1335
Sau96I GGNCC 2 cut(s) 544, 686
SchI GAGTC 3 cut(s) 18, 437, 1366
ScrFI CCNGG 2 cut(s) 602, 1270
SduI GDGCHC 3 cut(s) 677, 696, 1364
SfaNI GCATC 2 cut(s) 38, 1110
SfcI CTRYAG 1 cut(s) 659
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 70, 281
SmlI CTYRAG 2 cut(s) 250, 432
SmoI CTYRAG 2 cut(s) 250, 432
SphI GCATGC 1 cut(s) 1003
SsiI CCGC 5 cut(s) 117, 508, 551, 747, 1003
SspMI CTAG 2 cut(s) 85, 1139
StyD4I CCNGG 2 cut(s) 600, 1268
TaaI ACNGT 3 cut(s) 56, 563, 1391
TaiI ACGT 2 cut(s) 409, 1024
TaqI TCGA 2 cut(s) 464, 488
TatI WGTACW 2 cut(s) 306, 831
TauI GCSGC 1 cut(s) 1006
TfiI GAWTC 2 cut(s) 645, 782
Tru1I TTAA 8 cut(s) 251, 433, 791, 931, 992, 1154, 1255, 1346
Tru9I TTAA 8 cut(s) 251, 433, 791, 931, 992, 1154, 1255, 1346
TscAI CASTG 3 cut(s) 331, 625, 1211
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 7 cut(s) 658, 874, 922, 982, 1006, 1111, 1327
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 6 cut(s) 88, 265, 293, 512, 883, 1370
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 3 cut(s) 331, 625, 1211
Vha464I CTTAAG 2 cut(s) 250, 432
VpaK11BI GGWCC 1 cut(s) 544
VspI ATTAAT 1 cut(s) 1346
XagI CCTNNNNNAGG 1 cut(s) 1248
XapI RAATTY 4 cut(s) 490, 499, 613, 1014
XceI RCATGY 1 cut(s) 1003
XcmI CCANNNNNNNNNTGG 2 cut(s) 323, 810
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 2 cut(s) 85, 1139
Zsp2I ATGCAT 1 cut(s) 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.