Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Forward (+)

13294148 .. 13294939

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1138700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGTTTTTTTAAGGAAGGAATAATATTAGAAATTAAAGTTGGATTAGGTCCATGTGGAGAGCTACGGTATCCTTCTTATCCTGAACAGCATGGTTGGAAATATCCTGGTATTGGTGAATTCCAATGTTATGACCGATACTTGATGAAGAATCTGACACAGGCAGCAGAAGCAAGGGGCCACTCCTTCTTGGCCAGAGTACCAGACAATGCAGGTTCTTATAATTCCCAACCACCTGAGACAGGGTTTTTCCGTGACGGAGGTGATTATGATAGCTACTATGGCAGATTATTTCTTAATTGGTACTCCCGTGTGTTGATTGATCTTGGTGATCGGGTATCAGGTATCCACTGGTGGTACAAGACTGCCAGCCATCCTGCTGAATTAACTACTGGATTTTACAACTCCTGCAATCGTGATGGGTATGCGCCAATTTCAGTAATGTTAAAAAAAAACATGCGGCTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

157

Amino Acids

17.92

Weight (kDa)

7.7

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	4 - 112	6.2e-31	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	109 - 152	3.5e-09	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	203
AciI	CCGC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	3 cut(s)	201, 305, 359
AfiI	CCNNNNNNNGG	2 cut(s)	113, 242
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	2 cut(s)	64, 276
AluI	AGCT	2 cut(s)	64, 276
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	178, 192
ApeKI	GCWGC	2 cut(s)	164, 463
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	50, 178
AsuHPI	GGTGA	3 cut(s)	128, 275, 341
AvaII	GGWCC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	295, 328
BalI	TGGCCA	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	176, 450
BccI	CCATC	2 cut(s)	381, 413
BciT130I	CCWGG	1 cut(s)	108
BciVI	GTATCC	2 cut(s)	81, 356
BcoDI	GTCTC	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	2 cut(s)	81, 356
BisI	GCNGC	3 cut(s)	165, 461, 464
BlsI	GCNGC	3 cut(s)	166, 462, 465
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 178
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 242
Bse1I	ACTGG	2 cut(s)	356, 397
BseBI	CCWGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	113, 242
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	356, 397
BseXI	GCAGC	2 cut(s)	176, 450
BshFI	GGCC	2 cut(s)	180, 194
BslI	CCNNNNNNNGG	2 cut(s)	113, 242
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	180, 194
Bsp143I	GATC	2 cut(s)	322, 331
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	180, 194
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	356, 397
BssMI	GATC	2 cut(s)	322, 331
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	325, 334
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	322, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 282
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	176, 450
BsuI	GTATCC	2 cut(s)	81, 356
BsuRI	GGCC	2 cut(s)	180, 194
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	50, 178
Csp6I	GTAC	3 cut(s)	200, 304, 358
CviAII	CATG	3 cut(s)	54, 92, 457
CviJI	RGCY	6 cut(s)	64, 180, 194, 276, 372, 463
CviKI_1	RGCY	6 cut(s)	64, 180, 194, 276, 372, 463
CviQI	GTAC	3 cut(s)	200, 304, 358
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	324, 333
DpnII	GATC	2 cut(s)	322, 331
EaeI	YGGCCR	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	57, 95, 460
FaiI	YATR	8 cut(s)	55, 93, 132, 222, 270, 282, 426, 458
FatI	CATG	3 cut(s)	53, 91, 456
Fnu4HI	GCNGC	3 cut(s)	165, 461, 464
FokI	GGATG	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	165, 461, 464
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	3 cut(s)	165, 461, 464
HaeIII	GGCC	2 cut(s)	180, 194
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	57, 95, 460
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	3 cut(s)	128, 275, 341
Hpy188I	TCNGA	2 cut(s)	156, 470
Hpy188III	TCNNGA	2 cut(s)	83, 416
HpyAV	CCTTC	3 cut(s)	11, 84, 196
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	212, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 282
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	57, 95, 460
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	2 cut(s)	322, 331
Lsp1109I	GCAGC	2 cut(s)	176, 450
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	324, 333
MboI	GATC	2 cut(s)	322, 331
MboII	GAAGA	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	6 cut(s)	33, 119, 223, 298, 383, 432
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	22, 77
MnlI	CCTC	1 cut(s)	254
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	5 cut(s)	12, 36, 297, 386, 446
Msp20I	TGGCCA	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	170, 282
NdeII	GATC	2 cut(s)	322, 331
NlaIII	CATG	3 cut(s)	57, 95, 460
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	166, 462, 465
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	50, 178
RsaI	GTAC	3 cut(s)	201, 305, 359
RsaNI	GTAC	3 cut(s)	200, 304, 358
SaqAI	TTAA	5 cut(s)	12, 36, 297, 386, 446
SatI	GCNGC	3 cut(s)	165, 461, 464
Sau3AI	GATC	2 cut(s)	322, 331
Sau96I	GGNCC	2 cut(s)	50, 178
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	7 cut(s)	52, 66, 217, 238, 265, 278, 346
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	6 cut(s)	33, 119, 223, 298, 383, 432
SsiI	CCGC	1 cut(s)	460
SspI	AATATT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	6 cut(s)	33, 119, 223, 298, 383, 432
TauI	GCSGC	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	5 cut(s)	12, 36, 297, 386, 446
Tru9I	TTAA	5 cut(s)	12, 36, 297, 386, 446
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	164, 463
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	2 cut(s)	242, 273
TspRI	CASTG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.