Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Reverse (-)

24043891 .. 24046339

Gene Structure 2449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGTTGCTGGTGGGGATTGAAAGACTGGAGTCGGTGGCCAGTGGGGCTTGAAAGGCTGGAGGCCCAGATCGGAGGCCGGAGATGGGTTGCTGGTTCTAGCCTTGCACTCTTGCAGGTTGCCGAGTCGGGAGAACTCCAAGTCTCTAATCGAGTTGGCGAGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTTAGATATCCTGCTTATCCAGAGAGCAATGGAACCTGGAAGTTTCCTGGAATTGGAGAATTTCAATGCTATGACAAGTACATGAAGGCTTCCTTGGAAGCTTCAGCGGAGGCACAAGGAAAGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

108

Amino Acids

12.01

Weight (kDa)

5.21

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	53 - 102	9.5e-24	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	165, 254
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	85, 248
AgsI	TTSAA	4 cut(s)	22, 53, 170, 260
AjnI	CCWGG	2 cut(s)	230, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	3 cut(s)	38, 63, 76
ApoI	RAATTY	2 cut(s)	165, 254
AspS9I	GGNCC	2 cut(s)	64, 182
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	40
BccI	CCATC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	232, 243
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	232, 243
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	64, 182
BmiI	GGNNCC	2 cut(s)	183, 229
BmrFI	CCNGG	2 cut(s)	232, 243
BoxI	GACNNNNGTC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	49, 80
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 248
Bse1I	ACTGG	2 cut(s)	32, 41
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	232, 243
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	85, 248
BseMI	GCAATG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	32, 41
BshFI	GGCC	3 cut(s)	40, 65, 78
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	85, 248
BsmAI	GTCTC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	40, 65, 78
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	3 cut(s)	40, 65, 78
BspLI	GGNNCC	2 cut(s)	183, 229
BspMI	ACCTGC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	32, 41
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	232, 243
BstDEI	CTNAG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 55
BstNI	CCWGG	2 cut(s)	232, 243
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	230, 241
BsuRI	GGCC	3 cut(s)	40, 65, 78
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	64, 182
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	8 cut(s)	40, 49, 58, 65, 78, 102, 284, 296
CviKI_1	RGCY	8 cut(s)	40, 49, 58, 65, 78, 102, 284, 296
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	230, 241
EcoRV	GATATC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	1 cut(s)	280
FaiI	YATR	3 cut(s)	179, 267, 278
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	1 cut(s)	276
FspBI	CTAG	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	49, 80
HaeIII	GGCC	3 cut(s)	40, 65, 78
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	31, 125
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	2 cut(s)	129, 215
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	107, 115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 55
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	99
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	3 cut(s)	165, 246, 254
MluNI	TGGCCA	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	40, 134
MnlI	CCTC	4 cut(s)	55, 68, 154, 298
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
Msp20I	TGGCCA	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	232, 243
MvaI	CCWGG	2 cut(s)	232, 243
MwoI	GCNNNNNNNGC	2 cut(s)	46, 55
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	183, 229
NmeAIII	GCCGAG	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	241
PleI	GAGTC	2 cut(s)	39, 133
PpsI	GAGTC	2 cut(s)	39, 133
PpuMI	RGGWCCY	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	230, 241
PspGI	CCWGG	2 cut(s)	230, 241
PspN4I	GGNNCC	2 cut(s)	183, 229
PspPI	GGNCC	2 cut(s)	64, 182
PspPPI	RGGWCCY	1 cut(s)	182
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	64, 182
SchI	GAGTC	2 cut(s)	40, 134
ScrFI	CCNGG	2 cut(s)	232, 243
SetI	ASST	3 cut(s)	120, 233, 298
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	3 cut(s)	165, 246, 254
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	230, 241
StyI	CCWWGG	1 cut(s)	288
TaqI	TCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	165, 246, 254
TatI	WGTACW	1 cut(s)	273
TscAI	CASTG	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	165, 254
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.