Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Reverse (-)

9928522 .. 9930811

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTTTCACTCGCTCACCTCACGCAAATACTGCACCCCCACACGCCTCGTTCGTGCCAGCAAATTCCCCCAAACACGCTCCCACCTCGCACGCGTGGCAATCCCCCGAGCGTGAGCGCCCCCTCCTCGCATGCTCGCACGCTCGCACGCTTCTCCTTCCCCATCCCTCTCCCGCCCGACCCGAGCCGCCCGTCTCCGACCCCCTCCCTCCGTCTTCCCCTTCGGAGCCCCGCCCTACTCCTCGTGAGACGACGCCGTACTATTTATTTCGGGCCGCCGGAAAATTCGGGCACGGATTCCGGAGAAGCAGCTGGGGCTTCTGAAAGGGGGAAGAGAAGATGGATCGATCAGAAAATGGGACTGGGAGCTCTGAGTGAGGGCGATGAGGTGGAATTCGAGGAGAAAATGGAGAATTCCGGCCAAGATGGAGTCAAATGCAATGTCGGGGATGATGTACATATCCCACTTTCTCACTGGGTGACAGAAATTGGCCAAAAGAATCCTGATTTATATTTTACTAATAAAGAAGGGAAACGCAACACTGAATGTCTCACATGGGGAATTGATAAAGAGCGGGTTTTAAGAGGCCGCACTGCTGTTGAGGTTTACTTCGACTACATGAGGAGCTTCAGAGTTGAATTTGACGAGTTTTTTGAGGAATTAATAATATCAGAATTTGAAGTTGGATTAGGTTTGTGTGGAGAGCTACGGTATCCTTCTTATCCTGAACAGCATGGTTGGAAATATCCTGGTATTGGTGAATTCCAGTGTTATGATCGATACTTGATGAAGAATCTGACGCAGGCTGCAGAAGCAAGGGGTCACTCCTTCTGGGCCAGAGTACCAGATAATGCAGGCTCTTATAATTCCCAAACACATGAGACAGGGTTTTTCCATGACGGAGGTGATTATGATAGCTACTATGGCAGATTCTTTCTTAATTGGTACTCCCGTGTTTTGATTGATCACGGTGACCGTGTACTTGCTCTGGCCAATTTAGCTTTTGAAGGCACACGCATTGCTACAAAGGTATCAGGTATCCATTGGTGGTACAAGACTGCCAGCCATCCTGCTGAATTAACTGCTGGATTTTACAACTCCTGCAGTCGATGGGTATGCACCAATTTCTGCAATGTTAAAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

383

Amino Acids

43.35

Weight (kDa)

6.9

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AccBSI	CCGCTC	1 cut(s)	574
AccII	CGCG	1 cut(s)	94
AccIII	TCCGGA	1 cut(s)	299
AciI	CCGC	6 cut(s)	173, 187, 231, 275, 574, 589
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	3 cut(s)	418, 490, 990
AcsI	RAATTY	7 cut(s)	63, 283, 392, 412, 638, 674, 761
AcuI	CTGAAG	1 cut(s)	613
AcyI	GRCGYC	1 cut(s)	253
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	6 cut(s)	259, 456, 843, 947, 981, 1052
AfiI	CCNNNNNNNGG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	638, 680, 1007
AjnI	CCWGG	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	6 cut(s)	311, 368, 627, 706, 918, 1001
AluI	AGCT	6 cut(s)	311, 368, 627, 706, 918, 1001
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	4 cut(s)	198, 241, 554, 875
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	2 cut(s)	106, 181
Aor13HI	TCCGGA	1 cut(s)	299
AoxI	GGCC	6 cut(s)	272, 418, 490, 586, 834, 990
ApeKI	GCWGC	2 cut(s)	308, 806
ApoI	RAATTY	7 cut(s)	63, 283, 392, 412, 638, 674, 761
ArsI	GACNNNNNNTTYG	4 cut(s)	426, 458, 635, 667
AseI	ATTAAT	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	272, 834
AsuHPI	GGTGA	5 cut(s)	8, 490, 770, 917, 983
AvaI	CYCGRG	2 cut(s)	106, 181
BaeGI	GKGCMC	1 cut(s)	293
BaeI	ACNNNNGTAYC	4 cut(s)	937, 970, 1014, 1047
BalI	TGGCCA	2 cut(s)	492, 992
BanII	GRGCYC	2 cut(s)	230, 370
BauI	CACGAG	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	320, 793
BccI	CCATC	5 cut(s)	170, 333, 419, 1074, 1104
BceAI	ACGGC	1 cut(s)	240
BcgI	CGANNNNNNTGC	2 cut(s)	1098, 1132
BciT130I	CCWGG	1 cut(s)	750
BciVI	GTATCC	2 cut(s)	723, 1049
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	4 cut(s)	198, 241, 554, 875
BfmI	CTRYAG	2 cut(s)	807, 1102
BfoI	RGCGCY	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	723, 1049
BisI	GCNGC	5 cut(s)	187, 275, 309, 589, 807
BlsI	GCNGC	5 cut(s)	188, 276, 310, 590, 808
Bme1390I	CCNGG	1 cut(s)	750
BmeT110I	CYCGRG	2 cut(s)	106, 181
BmgT120I	GGNCC	2 cut(s)	272, 834
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	2 cut(s)	371, 484
BmuI	ACTGGG	2 cut(s)	371, 484
BpiI	GAAGAC	1 cut(s)	206
Bsa29I	ATCGAT	2 cut(s)	345, 778
BsaHI	GRCGYC	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse1I	ACTGG	3 cut(s)	366, 479, 766
Bse3DI	GCAATG	3 cut(s)	445, 1017, 1138
BseAI	TCCGGA	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	750
BseCI	ATCGAT	2 cut(s)	345, 778
BseGI	GGATG	3 cut(s)	162, 454, 1066
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	3 cut(s)	445, 1017, 1138
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	3 cut(s)	366, 479, 766
BseRI	GAGGAG	4 cut(s)	115, 230, 413, 637
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	320, 793
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	6 cut(s)	274, 420, 492, 588, 836, 992
BshVI	ATCGAT	2 cut(s)	345, 778
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	2 cut(s)	106, 181
BsiSI	CCGG	3 cut(s)	278, 300, 417
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	4 cut(s)	198, 241, 554, 875
BsmBI	CGTCTC	2 cut(s)	198, 241
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	6 cut(s)	274, 420, 492, 588, 836, 992
BsoBI	CYCGRG	2 cut(s)	106, 181
Bsp1286I	GDGCHC	3 cut(s)	230, 293, 370
Bsp13I	TCCGGA	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	342, 346, 775, 964
BspACI	CCGC	6 cut(s)	173, 187, 231, 275, 574, 589
BspANI	GGCC	6 cut(s)	274, 420, 492, 588, 836, 992
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	2 cut(s)	345, 778
BspEI	TCCGGA	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	227
BspMAI	CTGCAG	2 cut(s)	811, 1106
BspPI	GGATC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	574
BsrDI	GCAATG	3 cut(s)	445, 1017, 1138
BsrGI	TGTACA	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	366, 479, 766
BssMI	GATC	4 cut(s)	342, 346, 775, 964
BssNI	GRCGYC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	3 cut(s)	711, 971, 977
Bst6I	CTCTTC	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	371
BstEII	GGTNACC	1 cut(s)	971
BstF5I	GGATG	3 cut(s)	162, 454, 1066
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	4 cut(s)	345, 349, 778, 967
BstMAI	GTCTC	4 cut(s)	198, 241, 554, 875
BstMBI	GATC	4 cut(s)	342, 346, 775, 964
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 96, 314, 812, 924, 998
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	748
BstSFI	CTRYAG	2 cut(s)	807, 1102
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	320, 793
BstV2I	GAAGAC	1 cut(s)	206
Bsu15I	ATCGAT	2 cut(s)	345, 778
BsuI	GTATCC	2 cut(s)	723, 1049
BsuRI	GGCC	6 cut(s)	274, 420, 492, 588, 836, 992
BsuTUI	ATCGAT	2 cut(s)	345, 778
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	162, 454, 1066
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	4 cut(s)	472, 540, 591, 773
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	272, 834
ClaI	ATCGAT	2 cut(s)	345, 778
CseI	GACGC	2 cut(s)	261, 808
Csp6I	GTAC	6 cut(s)	258, 455, 842, 946, 980, 1051
CviAII	CATG	7 cut(s)	131, 555, 619, 734, 878, 896, 1146
CviQI	GTAC	6 cut(s)	258, 455, 842, 946, 980, 1051
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	4 cut(s)	344, 348, 777, 966
DpnII	GATC	4 cut(s)	342, 346, 775, 964
DraIII	CACNNNGTG	1 cut(s)	478
EaeI	YGGCCR	3 cut(s)	418, 490, 990
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	368
Eco24I	GRGCYC	2 cut(s)	230, 370
Eco53kI	GAGCTC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	613
Eco88I	CYCGRG	2 cut(s)	106, 181
Eco91I	GGTNACC	1 cut(s)	971
EcoICRI	GAGCTC	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	971
EcoRI	GAATTC	3 cut(s)	392, 412, 761
EcoRII	CCWGG	1 cut(s)	748
EcoT38I	GRGCYC	2 cut(s)	230, 370
Esp3I	CGTCTC	2 cut(s)	198, 241
FaeI	CATG	7 cut(s)	134, 558, 622, 737, 881, 899, 1149
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	7 cut(s)	130, 554, 618, 733, 877, 895, 1145
FauI	CCCGC	3 cut(s)	180, 238, 567
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	5 cut(s)	187, 275, 309, 589, 807
FokI	GGATG	3 cut(s)	149, 461, 1053
FriOI	GRGCYC	2 cut(s)	230, 370
Fsp4HI	GCNGC	5 cut(s)	187, 275, 309, 589, 807
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	187, 275, 309, 589, 807
GsaI	CCCAGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	6 cut(s)	274, 420, 492, 588, 836, 992
HapII	CCGG	3 cut(s)	278, 300, 417
HgaI	GACGC	2 cut(s)	261, 808
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	7 cut(s)	134, 558, 622, 737, 881, 899, 1149
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	5 cut(s)	296, 429, 499, 793, 930
HpaII	CCGG	3 cut(s)	278, 300, 417
HphI	GGTGA	5 cut(s)	8, 490, 770, 917, 983
Hpy166II	GTNNAC	2 cut(s)	607, 980
Hpy188I	TCNGA	8 cut(s)	198, 225, 322, 351, 372, 632, 673, 798
Hpy188III	TCNNGA	4 cut(s)	244, 300, 503, 725
Hpy8I	GTNNAC	2 cut(s)	607, 980
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	6 cut(s)	166, 230, 521, 726, 838, 1001
HpyCH4III	ACNGT	3 cut(s)	711, 971, 977
HpyCH4V	TGCA	7 cut(s)	34, 438, 809, 854, 1104, 1119, 1131
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 96, 314, 812, 924, 998
HpyF3I	CTNAG	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	7 cut(s)	134, 558, 622, 737, 881, 899, 1149
HspAI	GCGC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	299
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	4 cut(s)	342, 346, 775, 964
LmnI	GCTCC	4 cut(s)	84, 225, 365, 624
Lsp1109I	GCAGC	2 cut(s)	320, 793
MaeIII	GTNAC	3 cut(s)	478, 821, 971
MalI	GATC	4 cut(s)	344, 348, 777, 966
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	4 cut(s)	342, 346, 775, 964
MboII	GAAGA	4 cut(s)	206, 343, 348, 802
MhlI	GDGCHC	3 cut(s)	230, 293, 370
MlsI	TGGCCA	2 cut(s)	492, 992
MluI	ACGCGT	1 cut(s)	92
MluNI	TGGCCA	2 cut(s)	492, 992
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	3 cut(s)	221, 664, 719
Mox20I	TGGCCA	2 cut(s)	492, 992
MroI	TCCGGA	1 cut(s)	299
MscI	TGGCCA	2 cut(s)	492, 992
MseI	TTAA	5 cut(s)	581, 662, 939, 1079, 1137
Msp20I	TGGCCA	2 cut(s)	492, 992
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	3 cut(s)	278, 300, 417
MspR9I	CCNGG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	750
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	6 cut(s)	31, 96, 314, 812, 924, 998
NdeII	GATC	4 cut(s)	342, 346, 775, 964
NlaIII	CATG	7 cut(s)	134, 558, 622, 737, 881, 899, 1149
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	3 cut(s)	478, 821, 971
NspI	RCATGY	1 cut(s)	134
PaeI	GCATGC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	296, 499, 793, 930
PkrI	GCNGC	5 cut(s)	188, 276, 310, 590, 808
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	662
PsiI	TTATAA	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	748
PspEI	GGTNACC	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	272, 834
PstI	CTGCAG	2 cut(s)	811, 1106
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	6 cut(s)	259, 456, 843, 947, 981, 1052
RsaNI	GTAC	6 cut(s)	258, 455, 842, 946, 980, 1051
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	5 cut(s)	581, 662, 939, 1079, 1137
SatI	GCNGC	5 cut(s)	187, 275, 309, 589, 807
Sau3AI	GATC	4 cut(s)	342, 346, 775, 964
Sau96I	GGNCC	2 cut(s)	272, 834
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	3 cut(s)	230, 293, 370
SfcI	CTRYAG	2 cut(s)	807, 1102
SphI	GCATGC	1 cut(s)	134
SsiI	CCGC	6 cut(s)	173, 187, 231, 275, 574, 589
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	748
TaaI	ACNGT	3 cut(s)	711, 971, 977
TaqI	TCGA	5 cut(s)	345, 396, 612, 778, 1108
TatI	WGTACW	2 cut(s)	454, 979
TauI	GCSGC	3 cut(s)	189, 277, 591
TfiI	GAWTC	4 cut(s)	296, 499, 793, 930
Tru1I	TTAA	5 cut(s)	581, 662, 939, 1079, 1137
Tru9I	TTAA	5 cut(s)	581, 662, 939, 1079, 1137
TscAI	CASTG	4 cut(s)	479, 547, 598, 773
TseFI	GTSAC	3 cut(s)	478, 821, 971
TseI	GCWGC	2 cut(s)	308, 806
Tsp45I	GTSAC	3 cut(s)	478, 821, 971
TspDTI	ATGAA	1 cut(s)	803
TspGWI	ACGGA	3 cut(s)	200, 308, 915
TspRI	CASTG	4 cut(s)	479, 547, 598, 773
VspI	ATTAAT	1 cut(s)	662
XapI	RAATTY	7 cut(s)	63, 283, 392, 412, 638, 674, 761
XceI	RCATGY	1 cut(s)	134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.