Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006678

Physical Location & Seq

Genomic Coordinates Forward (+)

15439950 .. 15443018

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCACAATTCTCAGCTCCTCAAGTATCCAGTACGCTGAGGGCGCCACGCAGGCCAATTGCTTGTTGCAAGGCGACGACAATGGCTTGGTTGTCGTCCTGCACACAGACTGCGGTAGCATCCCTTAAGCTCACTCCGGGGTTTCGGGGCTTGCCGGAGCTCAATTCCTGTCGTTTGAGAGTATTGGGGAGTGATCGGTCTCGGAGTTTCGCCATGGCAAGAGACAGTGCTGAGGGGACTGCGGTGGGTGATCCTGTGGAAAATGCTGGTCGCAATCAGGCTGAAGATTCTTCAACAGAAAAGTTTGAGGAGCGTGATTTTACTGGCACGCCGTATGTTCCTGTGTATGTGATGTTACCGTTGGGTGTGATCAATATGAATGTTGAGCTAGTTGAGCCACAAGCTCTGCGAAATCAACTACAAGTGTTGAAGTCGGTTGGTGTTGATGGTGTTATGGTTGATTGCTGGTGGGGAATAGTAGAGGCGCACAATCCACAGCAATATAATTGGAATGGCTACAAGAGACTTTTTCAGATTGTGCGTGATCTTAACCTTAAGCTACAGGTCGTGATGTCATTCCATGAATGTGGAGGCAATGTCGGGGATGATGTACATATCCCACTTCCTCACTGGGTGACAGAAATTGGCCAAAAGAATCCTGATATATATTTTACAAATAAAGAAGGGAAACGCAATGCTGAATGTCTCACATGGGGAATTGATAAGGAGCGAGTTTTAAGAGGCCGTACTGCTGTTGAGGTTTACTTCGACTACATGAGGAGCTTCAGAGTTGAATTTAATGAATTTTTTGAGGAAGGAATAATATCAGAAATTGACGTTGGATTAGGTCCGTGTGGAGAGCTACGGTATCCTTCTTATCCTGAACAGCATGGTTGGAAATATCCTGGTATTGGTGAATTCCAGTGTTATGACCGATACTTGATGAAGGATCGATGGCACAGGCTGCAGAAGCAAGGGGCCACTCCTTTTGGGCCAGAGCACCAGATAATGCAGGTTCTTATAGTTCCCAACCACATGAGACAGGGTTTTTCCGTGACGGAGGTGATTATGATAGCTACTATGGCAGATTCTTCCTCAATTGGTACTCCCGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

373

Amino Acids

42.06

Weight (kDa)

5.96

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00490
fragaria_vesca	FvH4_7g14220
malus_domestica	MD01G1059800.v1.1 MD07G1137800.v1.1 MD08G1138700.v1.1 MD09G1275700.v1.1
prunus_persica	Prupe.2G170000_v2.0.a1
pyrus_communis	pycom01g08870 pycom01g08940 pycom01g08970 pycom01g09010 pycom07g13550
rosa_chinensis	RchiOBHm_Chr1g0355161
rosa_laevigata	RLG00000028173
rosa_multiflora	Rmu_co8509927.1_g000001 Rmu_sc0003115.1_g000037 Rmu_sc0004488.1_g000005
rosa_roxburghii	Rroxscaffold_4G00300630
rosa_rugosa	Rorug01G0245600
rosa_samantha	Rh1AG257800 Rh1BG227300 Rh1CG241500 Rh1DG255100 Rh7CG241900 Rh7DG238000
rosa_wichuraiana	Rw1G022750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1003
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	2 cut(s)	113, 242
AclWI	GGATC	2 cut(s)	245, 957
AcoI	YGGCCR	1 cut(s)	646
AcsI	RAATTY	3 cut(s)	794, 803, 917
AcuI	CTGAAG	2 cut(s)	303, 769
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	634
AfaI	GTAC	4 cut(s)	34, 612, 748, 1105
AfiI	CCNNNNNNNGG	1 cut(s)	911
AflII	CTTAAG	2 cut(s)	125, 554
AgsI	TTSAA	3 cut(s)	294, 430, 794
AjnI	CCWGG	1 cut(s)	904
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AluBI	AGCT	9 cut(s)	17, 130, 160, 388, 404, 559, 783, 862, 1076
AluI	AGCT	9 cut(s)	17, 130, 160, 388, 404, 559, 783, 862, 1076
Alw21I	GWGCWC	2 cut(s)	162, 1002
Alw26I	GTCTC	5 cut(s)	204, 216, 517, 710, 1033
AlwI	GGATC	2 cut(s)	245, 957
AoxI	GGCC	5 cut(s)	53, 646, 742, 978, 992
ApeKI	GCWGC	1 cut(s)	964
ApoI	RAATTY	3 cut(s)	794, 803, 917
AspLEI	GCGC	2 cut(s)	46, 487
AspS9I	GGNCC	3 cut(s)	848, 978, 992
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	4 cut(s)	260, 646, 926, 1075
AvaII	GGWCC	1 cut(s)	848
BaeI	ACNNNNGTAYC	1 cut(s)	1095
BalI	TGGCCA	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	162, 1002
BbvCI	CCTCAGC	2 cut(s)	38, 231
BbvI	GCAGC	1 cut(s)	951
BccI	CCATC	2 cut(s)	440, 948
BceAI	ACGGC	2 cut(s)	316, 729
BciT130I	CCWGG	1 cut(s)	906
BciVI	GTATCC	2 cut(s)	37, 879
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	5 cut(s)	204, 216, 517, 710, 1033
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	560, 965
BfoI	RGCGCY	1 cut(s)	47
BfrI	CTTAAG	2 cut(s)	125, 554
BfuAI	ACCTGC	1 cut(s)	1003
BfuI	GTATCC	2 cut(s)	37, 879
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	965
BlsI	GCNGC	1 cut(s)	966
Bme1390I	CCNGG	2 cut(s)	138, 906
Bme18I	GGWCC	1 cut(s)	848
BmgT120I	GGNCC	3 cut(s)	848, 978, 992
BmiI	GGNNCC	2 cut(s)	45, 979
BmrFI	CCNGG	2 cut(s)	138, 906
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	640
Bpu10I	CCTNAGC	2 cut(s)	38, 231
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	952
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	137, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse1I	ACTGG	4 cut(s)	30, 328, 635, 922
Bse3DI	GCAATG	2 cut(s)	601, 700
BseBI	CCWGG	1 cut(s)	906
BseCI	ATCGAT	1 cut(s)	952
BseDI	CCNNGG	2 cut(s)	137, 213
BseGI	GGATG	2 cut(s)	119, 610
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	2 cut(s)	601, 700
BseMII	CTCAG	3 cut(s)	27, 29, 222
BseNI	ACTGG	4 cut(s)	30, 328, 635, 922
BseRI	GAGGAG	3 cut(s)	9, 323, 793
BseXI	GCAGC	1 cut(s)	951
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	5 cut(s)	55, 648, 744, 980, 994
BshNI	GGYRCC	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	952
BsiHKAI	GWGCWC	2 cut(s)	162, 1002
BsiSI	CCGG	2 cut(s)	137, 155
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	5 cut(s)	204, 216, 517, 710, 1033
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	5 cut(s)	55, 648, 744, 980, 994
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	162, 1002
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	5 cut(s)	193, 250, 369, 544, 949
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	113, 242
BspANI	GGCC	5 cut(s)	55, 648, 744, 980, 994
BspCNI	CTCAG	3 cut(s)	26, 30, 223
BspDI	ATCGAT	1 cut(s)	952
BspLI	GGNNCC	2 cut(s)	45, 979
BspMAI	CTGCAG	1 cut(s)	969
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	2 cut(s)	245, 957
BspT107I	GGYRCC	1 cut(s)	43
BspTI	CTTAAG	2 cut(s)	125, 554
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	601, 700
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	4 cut(s)	30, 328, 635, 922
BssECI	CCNNGG	2 cut(s)	137, 213
BssMI	GATC	5 cut(s)	193, 250, 369, 544, 949
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	906
Bst4CI	ACNGT	3 cut(s)	227, 360, 867
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	2 cut(s)	125, 554
BstAPI	GCANNNNNTGC	1 cut(s)	964
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	3 cut(s)	53, 152, 329
BstDEI	CTNAG	3 cut(s)	13, 38, 231
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	119, 610
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 487
BstKTI	GATC	5 cut(s)	196, 253, 372, 547, 952
BstMAI	GTCTC	5 cut(s)	204, 216, 517, 710, 1033
BstMBI	GATC	5 cut(s)	193, 250, 369, 544, 949
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 52, 394, 964, 970, 1082
BstNI	CCWGG	1 cut(s)	906
BstSCI	CCNGG	2 cut(s)	136, 904
BstSFI	CTRYAG	2 cut(s)	560, 965
BstV1I	GCAGC	1 cut(s)	951
BstXI	CCANNNNNNTGG	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	952
BsuI	GTATCC	2 cut(s)	37, 879
BsuRI	GGCC	5 cut(s)	55, 648, 744, 980, 994
BsuTUI	ATCGAT	1 cut(s)	952
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	119, 610
BtsIMutI	CAGTG	3 cut(s)	232, 628, 929
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	3 cut(s)	53, 152, 329
CfoI	GCGC	2 cut(s)	46, 487
Cfr13I	GGNCC	3 cut(s)	848, 978, 992
ClaI	ATCGAT	1 cut(s)	952
Csp6I	GTAC	4 cut(s)	33, 611, 747, 1104
CspCI	CAANNNNNGTGG	2 cut(s)	970, 1005
CviAII	CATG	6 cut(s)	214, 581, 711, 775, 890, 1036
CviQI	GTAC	4 cut(s)	33, 611, 747, 1104
DdeI	CTNAG	3 cut(s)	13, 38, 231
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	5 cut(s)	195, 252, 371, 546, 951
DpnII	GATC	5 cut(s)	193, 250, 369, 544, 949
DraIII	CACNNNGTG	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	646
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	848
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	303, 769
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	904
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	162
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	6 cut(s)	217, 584, 714, 778, 893, 1039
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	6 cut(s)	213, 580, 710, 774, 889, 1035
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	965
FokI	GGATG	2 cut(s)	106, 617
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	965
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	45, 486
GluI	GCNGC	1 cut(s)	965
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	5 cut(s)	55, 648, 744, 980, 994
HapII	CCGG	2 cut(s)	137, 155
HhaI	GCGC	2 cut(s)	46, 487
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	217, 584, 714, 778, 893, 1039
Hin6I	GCGC	2 cut(s)	44, 485
HinP1I	GCGC	2 cut(s)	44, 485
HinfI	GANTC	3 cut(s)	287, 655, 1088
HpaII	CCGG	2 cut(s)	137, 155
HphI	GGTGA	4 cut(s)	260, 646, 926, 1075
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	4 cut(s)	204, 534, 788, 829
Hpy188III	TCNNGA	3 cut(s)	568, 659, 881
Hpy8I	GTNNAC	1 cut(s)	763
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	677, 809, 882, 940
HpyCH4III	ACNGT	3 cut(s)	227, 360, 867
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	4 cut(s)	69, 102, 967, 1012
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 52, 394, 964, 970, 1082
HpyF3I	CTNAG	3 cut(s)	13, 38, 231
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	6 cut(s)	217, 584, 714, 778, 893, 1039
HspAI	GCGC	2 cut(s)	44, 485
KasI	GGCGCC	1 cut(s)	43
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	5 cut(s)	193, 250, 369, 544, 949
LmnI	GCTCC	5 cut(s)	22, 157, 310, 727, 780
Lsp1109I	GCAGC	1 cut(s)	951
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	3 cut(s)	354, 634, 1054
MalI	GATC	5 cut(s)	195, 252, 371, 546, 951
MboI	GATC	5 cut(s)	193, 250, 369, 544, 949
MboII	GAAGA	3 cut(s)	282, 296, 1083
MfeI	CAATTG	2 cut(s)	57, 1098
MhlI	GDGCHC	2 cut(s)	162, 1002
MlsI	TGGCCA	1 cut(s)	648
MluNI	TGGCCA	1 cut(s)	648
Mly113I	GGCGCC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	820, 875
Mox20I	TGGCCA	1 cut(s)	648
MscI	TGGCCA	1 cut(s)	648
MseI	TTAA	5 cut(s)	126, 549, 555, 737, 798
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	648
MspCI	CTTAAG	2 cut(s)	125, 554
MspI	CCGG	2 cut(s)	137, 155
MspR9I	CCNGG	2 cut(s)	138, 906
MunI	CAATTG	2 cut(s)	57, 1098
MvaI	CCWGG	1 cut(s)	906
MwoI	GCNNNNNNNGC	6 cut(s)	43, 52, 394, 964, 970, 1082
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	5 cut(s)	193, 250, 369, 544, 949
NlaIII	CATG	6 cut(s)	217, 584, 714, 778, 893, 1039
NlaIV	GGNNCC	2 cut(s)	45, 979
NmuCI	GTSAC	2 cut(s)	634, 1054
PfeI	GAWTC	3 cut(s)	287, 655, 1088
PkrI	GCNGC	1 cut(s)	966
PluTI	GGCGCC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	2 cut(s)	45, 979
PspPI	GGNCC	3 cut(s)	848, 978, 992
PstI	CTGCAG	1 cut(s)	969
RsaI	GTAC	4 cut(s)	34, 612, 748, 1105
RsaNI	GTAC	4 cut(s)	33, 611, 747, 1104
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	5 cut(s)	126, 549, 555, 737, 798
SatI	GCNGC	1 cut(s)	965
Sau3AI	GATC	5 cut(s)	193, 250, 369, 544, 949
Sau96I	GGNCC	3 cut(s)	848, 978, 992
ScrFI	CCNGG	2 cut(s)	138, 906
SduI	GDGCHC	2 cut(s)	162, 1002
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	2 cut(s)	560, 965
SfoI	GGCGCC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	3 cut(s)	21, 125, 554
SmoI	CTYRAG	3 cut(s)	21, 125, 554
SsiI	CCGC	2 cut(s)	113, 242
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	136, 904
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	227, 360, 867
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	2 cut(s)	768, 952
TaqII	GACCGA	2 cut(s)	186, 948
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	3 cut(s)	287, 655, 1088
Tru1I	TTAA	5 cut(s)	126, 549, 555, 737, 798
Tru9I	TTAA	5 cut(s)	126, 549, 555, 737, 798
TscAI	CASTG	3 cut(s)	232, 635, 929
TseFI	GTSAC	2 cut(s)	634, 1054
TseI	GCWGC	1 cut(s)	964
Tsp45I	GTSAC	2 cut(s)	634, 1054
TspDTI	ATGAA	4 cut(s)	392, 597, 816, 959
TspGWI	ACGGA	3 cut(s)	840, 1042, 1073
TspRI	CASTG	3 cut(s)	232, 635, 929
Vha464I	CTTAAG	2 cut(s)	125, 554
VpaK11BI	GGWCC	1 cut(s)	848
XapI	RAATTY	3 cut(s)	794, 803, 917
XcmI	CCANNNNNNNNNTGG	1 cut(s)	627
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.