Rorug01G0277900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014800
Physical Location & Seq
Reverse (-)
39092628 .. 39093621
994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0277900.1

Sequence Viewer

Length: 540 bp
ATGGAAAGGGAAAAGAATGGGAAGATGGATGAGTCGTCTCTGCTCCTTAGGCATCTTCAATGTGCTCCCGAGACTCTTCTCCTCATGATTGATGATCTTGTGCCACGGTACATGAGTTCTCCACGAATGTTTGTAAATTCCGAGCAGATTTTCTGCCGACCTATCTTCACTCAAATGATCATAACTTGCTCTAGAAGTATTGAAATCGAGATCCGTAAAATTCTACAGAAATATGAGCACATCACTAAGTCTTTGAATCTGCAAAATGTCACCATTGAAAGTGACTGTTTGGAAGCAGTTCAGCTGATTAGCAGTGCAGACCATGACCTAGATGAAAACGTGGCTCTGTTGGATGATATTAAGCCTCTTATAGATGGTATTCCAGGAGCAAGACTTGTTCATGCTCCTCGTACATGTAATTCAGTAGCACATAGACTTGCTGCTACTGCTTTTGAAACTTTCCAGCAAGAGGTCTGGTTCCATCAGCCTCCTAGTCTTATACTCGATGTACTGCAGTATGACTCTGCTCATACTACTTAG

Protein Analysis

179

Amino Acids

20.45

Weight (kDa)

5.17

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 83 - 149 6.5e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014800)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g17050 FvH4_7g17050
malus_domestica MD01G1085200.v1.1 MD07G1154200.v1.1
prunus_persica Prupe.2G192800_v2.0.a1
pyrus_communis pycom07g15170
rosa_chinensis RchiOBHm_Chr1g0360461
rosa_laevigata RLG00000027806
rosa_multiflora Rmu_ssc0000337.1_g000001
rosa_roxburghii Rroxscaffold_4G00296090
rosa_rugosa Rorug01G0277900 Rorug01G0278000
rosa_samantha Rh1AG291100 Rh1BG256100 Rh1CG273800 Rh1DG285900
rosa_wichuraiana Rw1G025780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 205
AcsI RAATTY 2 cut(s) 136, 219
AfaI GTAC 3 cut(s) 110, 412, 510
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 5 cut(s) 59, 203, 256, 278, 455
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 2 cut(s) 67, 240
Alw26I GTCTC 2 cut(s) 42, 65
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 2 cut(s) 136, 219
Asp700I GAANNNNTTC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 47
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
Bbv12I GWGCWC 2 cut(s) 67, 240
BbvI GCAGC 1 cut(s) 427
BccI CCATC 3 cut(s) 19, 368, 489
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 42, 65
BfaI CTAG 3 cut(s) 192, 329, 492
BfmI CTRYAG 2 cut(s) 224, 512
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
Bme1390I CCNGG 1 cut(s) 384
BmeT110I CYCGRG 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse21I CCTNAGG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 34, 358
BseLI CCNNNNNNNGG 1 cut(s) 469
BseRI GAGGAG 2 cut(s) 71, 396
BseXI GCAGC 1 cut(s) 427
BsgI GTGCAG 1 cut(s) 336
BsiHKAI GWGCWC 2 cut(s) 67, 240
BsiHKCI CYCGRG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 42, 65
BsmBI CGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 67, 240
Bsp143I GATC 3 cut(s) 94, 177, 210
BspHI TCATGA 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 479
BspMAI CTGCAG 1 cut(s) 516
BspPI GGATC 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 3 cut(s) 94, 177, 210
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 108, 287
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 47, 246, 537
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 34, 358
BstKTI GATC 3 cut(s) 97, 180, 213
BstMAI GTCTC 2 cut(s) 42, 65
BstMBI GATC 3 cut(s) 94, 177, 210
BstMWI GCNNNNNNNGC 2 cut(s) 49, 446
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 2 cut(s) 224, 512
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 2 cut(s) 34, 358
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 84
Csp6I GTAC 3 cut(s) 109, 411, 509
CviAII CATG 5 cut(s) 85, 112, 323, 401, 414
CviJI RGCY 4 cut(s) 304, 344, 364, 487
CviKI_1 RGCY 4 cut(s) 304, 344, 364, 487
CviQI GTAC 3 cut(s) 109, 411, 509
DdeI CTNAG 3 cut(s) 47, 246, 537
DpnI GATC 3 cut(s) 96, 179, 212
DpnII GATC 3 cut(s) 94, 177, 210
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 5 cut(s) 88, 115, 326, 404, 417
FatI CATG 5 cut(s) 84, 111, 322, 400, 413
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 2 cut(s) 41, 365
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 3 cut(s) 192, 329, 492
GluI GCNGC 1 cut(s) 441
Hin1II CATG 5 cut(s) 88, 115, 326, 404, 417
HinfI GANTC 4 cut(s) 32, 73, 256, 521
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 4 cut(s) 68, 85, 192, 208
HpyCH4III ACNGT 2 cut(s) 108, 287
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 262, 317, 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 446
HpyF3I CTNAG 3 cut(s) 47, 246, 537
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 5 cut(s) 88, 115, 326, 404, 417
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 94, 177, 210
LmnI GCTCC 4 cut(s) 48, 70, 386, 409
LpnPI CCDG 4 cut(s) 369, 396, 460, 476
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 1 cut(s) 61
MaeI CTAG 3 cut(s) 192, 329, 492
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 268, 281
MalI GATC 3 cut(s) 96, 179, 212
MboI GATC 3 cut(s) 94, 177, 210
MboII GAAGA 4 cut(s) 34, 47, 68, 157
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 67, 240
MluCI AATT 3 cut(s) 136, 219, 418
MlyI GAGTC 3 cut(s) 41, 67, 515
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 5 cut(s) 92, 375, 417, 463, 498
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 49, 446
NdeII GATC 3 cut(s) 94, 177, 210
NlaIII CATG 5 cut(s) 88, 115, 326, 404, 417
NlaIV GGNNCC 1 cut(s) 479
NmuCI GTSAC 2 cut(s) 268, 281
NspI RCATGY 1 cut(s) 417
PagI TCATGA 1 cut(s) 84
PciI ACATGT 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 3 cut(s) 40, 67, 515
PpsI GAGTC 3 cut(s) 40, 67, 515
PscI ACATGT 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 516
PsuI RGATCY 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 3 cut(s) 110, 412, 510
RsaNI GTAC 3 cut(s) 109, 411, 509
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 3 cut(s) 94, 177, 210
SchI GAGTC 3 cut(s) 41, 67, 515
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 2 cut(s) 67, 240
SetI ASST 5 cut(s) 163, 306, 330, 342, 474
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 2 cut(s) 224, 512
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 3 cut(s) 136, 219, 418
SspMI CTAG 3 cut(s) 192, 329, 492
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 108, 287
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 207, 504
TasI AATT 3 cut(s) 136, 219, 418
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 268, 281
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 2 cut(s) 268, 281
TspDTI ATGAA 2 cut(s) 348, 389
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 319
XapI RAATTY 2 cut(s) 136, 219
XbaI TCTAGA 1 cut(s) 191
XceI RCATGY 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 3 cut(s) 192, 329, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.