Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007610

Physical Location & Seq

Genomic Coordinates Reverse (-)

39210815 .. 39212638

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCTCATAAATTATTCAGCAACAGGGACATCTACATTCACTTCAAAAGCCCCAAGTAGACTGACACACCATTATGCTCAAAGCCTCAATGGTGTGATCATAACTTCATATGAAAAGAGTGGACTGTGTGCTCTAGGTGACCTAGCTGGCTATGTGAATGGAGGTGATGCTATCATTGCTCTTGTAGATATTCCGGAAAGATCGATGGGGAAAGCGGTAGGGCATGGAAAGTGGCCTGGTGAAAGAACAGAGGAAGAGGGTTGTGAAAATGCATGTTTGACTCTGACTGACTCTGTTGGTTTATCTTTTGCATTCTCACATTTTGTGGTGTTGAACAAGAATTGGGCTAGTGGGTTTGAAGGCATTGACTTGAAGACTTGTGGGTCTTTTTCAATTTTTGCCAGTGGTGTTGAAGGGTTTGAAGATTCGAGCTTTGCTTGGTTATGGTTATGGGGTTGCCTTTGGAGATGCTTGGTGTCAAAGGCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

163

Amino Acids

17.53

Weight (kDa)

5.27

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00900 AT4G00900
fragaria_vesca	FvH4_7g17100 FvH4_7g17100 FvH4_7g17100 FvH4_7g17100
malus_domestica	MD07G1154700.v1.1
prunus_persica	Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360511
rosa_laevigata	RLG00000027800
rosa_multiflora	Rmu_ssc0000337.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296030
rosa_rugosa	Rorug01G0279000 Rorug01G0279100 Rorug01G0279200 Rorug01G0279300 Rorug01G0279400
rosa_samantha	Rh1AG291600 Rh1CG274300
rosa_wichuraiana	Rw1G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	490
AasI	GACNNNNNNGTC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	45, 334, 359, 373, 393, 413, 422
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	146, 432
AluI	AGCT	2 cut(s)	146, 432
Alw21I	GWGCWC	1 cut(s)	133
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	149, 176, 251
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	133
BccI	CCATC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	1 cut(s)	96
BfaI	CTAG	3 cut(s)	134, 143, 348
Bme1390I	CCNGG	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	157, 458
BpiI	GAAGAC	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	237
BseCI	ATCGAT	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	402
BshFI	GGCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	96, 200
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	235
BspDI	ATCGAT	1 cut(s)	203
BspEI	TCCGGA	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	96, 200
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	99, 203
BstMBI	GATC	2 cut(s)	96, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	235
BsuTUI	ATCGAT	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	203
CviAII	CATG	2 cut(s)	224, 273
CviJI	RGCY	8 cut(s)	50, 84, 146, 150, 235, 347, 432, 485
CviKI_1	RGCY	8 cut(s)	50, 84, 146, 150, 235, 347, 432, 485
DpnI	GATC	2 cut(s)	98, 202
DpnII	GATC	2 cut(s)	96, 200
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	2 cut(s)	227, 276
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	223, 272
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	58
FspBI	CTAG	3 cut(s)	134, 143, 348
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	2 cut(s)	227, 276
HinfI	GANTC	3 cut(s)	280, 290, 425
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	3 cut(s)	149, 176, 251
Hpy166II	GTNNAC	2 cut(s)	59, 122
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	59, 122
HpyAV	CCTTC	2 cut(s)	353, 407
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	272, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Hsp92II	CATG	2 cut(s)	227, 276
Kpn2I	TCCGGA	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	96, 200
LpnPI	CCDG	6 cut(s)	9, 132, 207, 222, 249, 415
LweI	GCATC	2 cut(s)	157, 458
MaeI	CTAG	3 cut(s)	134, 143, 348
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	98, 202
MboI	GATC	2 cut(s)	96, 200
MboII	GAAGA	3 cut(s)	266, 385, 434
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	3 cut(s)	10, 340, 393
MlyI	GAGTC	2 cut(s)	274, 284
MnlI	CCTC	4 cut(s)	95, 155, 244, 250
Mph1103I	ATGCAT	1 cut(s)	274
MroI	TCCGGA	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	96, 200
NlaIII	CATG	2 cut(s)	227, 276
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	1 cut(s)	276
PctI	GAATGC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	425
PleI	GAGTC	2 cut(s)	274, 284
PpsI	GAGTC	2 cut(s)	274, 284
PsiI	TTATAA	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	96, 200
SchI	GAGTC	2 cut(s)	274, 284
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	5 cut(s)	139, 144, 148, 166, 434
SfaNI	GCATC	2 cut(s)	157, 458
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	10, 340, 393
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	3 cut(s)	134, 143, 348
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	203, 428
TasI	AATT	3 cut(s)	10, 340, 393
TfiI	GAWTC	1 cut(s)	425
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	96, 126
TspRI	CASTG	1 cut(s)	409
XceI	RCATGY	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	3 cut(s)	134, 143, 348
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.