Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007610

Physical Location & Seq

Genomic Coordinates Reverse (-)

39215336 .. 39216567

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0279200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTCGAAGAAGAACGATCTTGCTCGTCGGAAAAGACAGCACGAATTCGAACTCAGAAGAGAGAAAGAAGCGAAAGAAAAGAGGGCAAAGAAGCTTCAAGCAAAGAAAAGCAAGATGAAAGTTGATGGTACTGAGAAGAAGAAGAAGGGTGGGTTTCAAGTCGGCAAGAAGAAGTTGAAGACCAAAATGACGGCGTTGGCAAAGGCTAAAGCTGCCCAAGCGATGGAGGTTGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

79

Amino Acids

9.14

Weight (kDa)

10.56

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00900 AT4G00900
fragaria_vesca	FvH4_7g17100 FvH4_7g17100 FvH4_7g17100 FvH4_7g17100
malus_domestica	MD07G1154700.v1.1
prunus_persica	Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1 Prupe.2G193300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360511
rosa_laevigata	RLG00000027800
rosa_multiflora	Rmu_ssc0000337.1_g000006
rosa_roxburghii	Rroxscaffold_4G00296030
rosa_rugosa	Rorug01G0279000 Rorug01G0279100 Rorug01G0279200 Rorug01G0279300 Rorug01G0279400
rosa_samantha	Rh1AG291600 Rh1CG274300
rosa_wichuraiana	Rw1G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	98, 158, 178
AluBI	AGCT	2 cut(s)	94, 212
AluI	AGCT	2 cut(s)	94, 212
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	2 cut(s)	119, 217
BceAI	ACGGC	1 cut(s)	207
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	67, 123
BseXI	GCAGC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	223
Bsp119I	TTCGAA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	16
BspCNI	CTCAG	2 cut(s)	66, 124
BspT104I	TTCGAA	1 cut(s)	48
BssMI	GATC	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	53, 132
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 218
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	129
CviJI	RGCY	3 cut(s)	94, 206, 212
CviKI_1	RGCY	3 cut(s)	94, 206, 212
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	2 cut(s)	53, 132
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	30, 56
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 218
HpyF3I	CTNAG	2 cut(s)	53, 132
Kzo9I	GATC	1 cut(s)	16
Lsp1109I	GCAGC	1 cut(s)	199
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	8 cut(s)	19, 22, 69, 148, 151, 154, 181, 190
MluCI	AATT	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	2 cut(s)	75, 220
MwoI	GCNNNNNNNGC	2 cut(s)	212, 218
NdeII	GATC	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	16
SetI	ASST	3 cut(s)	96, 214, 231
SfuI	TTCGAA	1 cut(s)	48
SgeI	CNNG	8 cut(s)	32, 36, 53, 110, 124, 170, 178, 230
Sse9I	AATT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	5, 48
TasI	AATT	1 cut(s)	44
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.