Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009237

Physical Location & Seq

Genomic Coordinates Forward (+)

52648831 .. 52649486

Gene Structure 656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0426000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAACCTGCGGAAAAGAAAAGGATTATGGACGATTTGGACTTGTTTGTGCAGAGGGGCCGGGGGAGTTCTATAAGGAGTCCACCTGGTACTGGCAAATCCAGCTTGATCTACAATGTATATGATTTGGAGCTTACAAGCATCTCTGACAATGCTGAATTGAGAAAAGCTTTGTTGTCTACCTCCAATCGTTCTGTTTTAGTGATCGAGGACATTGATTATTGCTCGTTGGAAATACAGAACCGCGAGAAAGAGGAGGAGGAATCACCAGAAGGGGAAGATTCTTCTTCCTCTAAGAAGAAGTACAAGCAACAACACAAGGTGACGCTTTCGGGGTTGCTCAACATGATTGATGGTCTGTGGTCAAGCTGTGGTGATCAAAGACTGATTGTATTCACCACCAACTACAAGGACAAGCTAGACCCTGCATTGTTGCGTCCGGGGCGAATGGACGTGCATATCAACATGTCGTATTGCACTCCGAGTGGGTTCAGGATCTTGGCTTCTAACTACCTCGACATTCAGGAGAGCAACCCTCATTTTCTCTGCGGAGAAATTGAAGGGTTGATAGAGAGCATGGAGATGCCTAAAATTGTACTTTTGAGACACTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin Pkinase

Protein Analysis

205

Amino Acids

23.29

Weight (kDa)

5.21

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	28 - 157	2.6e-09	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	159 - 195	2.4e-07	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53450 AT5G53450 AT5G53450
fragaria_vesca	FvH4_7g31750 FvH4_7g31750 FvH4_7g31750
malus_domestica	MD01G1219800.v1.1
prunus_persica	Prupe.2G311400_v2.0.a1 Prupe.2G311400_v2.0.a1
pyrus_communis	pycom01g22960
rosa_chinensis	RchiOBHm_Chr1g0380971
rosa_laevigata	RLG00000026255
rosa_multiflora	Rmu_sc0013826.1_g000005 Rmu_sc0013826.1_g000006
rosa_roxburghii	Rroxscaffold_4G00278890
rosa_rugosa	Rorug01G0426000 Rorug01G0426100
rosa_samantha	Rh1AG450000 Rh1BG405800 Rh1CG419800 Rh1DG436300
rosa_wichuraiana	Rw1G039200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	179
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	11, 244, 549
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	611
AdeI	CACNNNGTG	1 cut(s)	322
AfaI	GTAC	3 cut(s)	91, 305, 597
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	560
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	5 cut(s)	105, 133, 170, 369, 418
AluI	AGCT	5 cut(s)	105, 133, 170, 369, 418
Alw26I	GTCTC	1 cut(s)	598
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	2 cut(s)	58, 611
AspS9I	GGNCC	1 cut(s)	58
AsuC2I	CCSGG	2 cut(s)	62, 441
AsuHPI	GGTGA	4 cut(s)	258, 334, 386, 388
BalI	TGGCCA	1 cut(s)	613
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	2 cut(s)	62, 441
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	1 cut(s)	419
BfuAI	ACCTGC	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	62, 87, 441
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	6, 59
BmrFI	CCNGG	3 cut(s)	62, 87, 441
BmsI	GCATC	2 cut(s)	150, 573
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpuMI	CCSGG	2 cut(s)	62, 441
BsaJI	CCNNGG	2 cut(s)	61, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	97, 614
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	61, 440
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	97, 614
BseRI	GAGGAG	2 cut(s)	269, 272
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	60, 613
BsiSI	CCGG	2 cut(s)	61, 440
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	598
BsnI	GGCC	2 cut(s)	60, 613
Bsp143I	GATC	4 cut(s)	108, 204, 376, 495
BspACI	CCGC	3 cut(s)	11, 244, 549
BspANI	GGCC	2 cut(s)	60, 613
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	6, 59
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	97, 614
BssECI	CCNNGG	2 cut(s)	61, 440
BssMI	GATC	4 cut(s)	108, 204, 376, 495
Bst2UI	CCWGG	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	4 cut(s)	111, 207, 379, 498
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	4 cut(s)	108, 204, 376, 495
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 442
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	3 cut(s)	60, 85, 439
BstUI	CGCG	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	60, 613
BtrI	CACGTC	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	607
BveI	ACCTGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	2 cut(s)	334, 425
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	90, 304, 596
CviAII	CATG	4 cut(s)	346, 466, 577, 615
CviJI	RGCY	8 cut(s)	60, 105, 133, 170, 369, 418, 503, 613
CviKI_1	RGCY	8 cut(s)	60, 105, 133, 170, 369, 418, 503, 613
CviQI	GTAC	3 cut(s)	90, 304, 596
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	4 cut(s)	110, 206, 378, 497
DpnII	GATC	4 cut(s)	108, 204, 376, 495
DraIII	CACNNNGTG	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	4 cut(s)	349, 469, 580, 618
FaiI	YATR	9 cut(s)	29, 74, 121, 123, 347, 459, 467, 578, 616
FatI	CATG	4 cut(s)	345, 465, 576, 614
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	419
HaeIII	GGCC	2 cut(s)	60, 613
HapII	CCGG	2 cut(s)	61, 440
HgaI	GACGC	2 cut(s)	334, 425
Hin1II	CATG	4 cut(s)	349, 469, 580, 618
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	3 cut(s)	79, 263, 281
HpaII	CCGG	2 cut(s)	61, 440
HphI	GGTGA	4 cut(s)	258, 334, 386, 388
Hpy166II	GTNNAC	2 cut(s)	83, 180
Hpy188I	TCNGA	2 cut(s)	148, 483
Hpy188III	TCNNGA	2 cut(s)	493, 524
Hpy8I	GTNNAC	2 cut(s)	83, 180
HpyAV	CCTTC	2 cut(s)	266, 554
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	52, 428, 457, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 442
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	4 cut(s)	349, 469, 580, 618
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	108, 204, 376, 495
LmnI	GCTCC	1 cut(s)	130
LweI	GCATC	2 cut(s)	150, 573
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	110, 206, 378, 497
MboI	GATC	4 cut(s)	108, 204, 376, 495
MboII	GAAGA	4 cut(s)	276, 279, 290, 310
MflI	RGATCY	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	3 cut(s)	158, 555, 591
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	9 cut(s)	48, 193, 202, 247, 250, 253, 301, 524, 546
Mox20I	TGGCCA	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	613
MslI	CAYNNNNRTG	1 cut(s)	581
Msp20I	TGGCCA	1 cut(s)	613
MspI	CCGG	2 cut(s)	61, 440
MspR9I	CCNGG	3 cut(s)	62, 87, 441
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	102, 442
NciI	CCSGG	2 cut(s)	62, 441
NdeII	GATC	4 cut(s)	108, 204, 376, 495
NlaIII	CATG	4 cut(s)	349, 469, 580, 618
NlaIV	GGNNCC	2 cut(s)	6, 59
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	263, 281
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	6, 59
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	495
RsaI	GTAC	3 cut(s)	91, 305, 597
RsaNI	GTAC	3 cut(s)	90, 304, 596
RseI	CAYNNNNRTG	1 cut(s)	581
Sau3AI	GATC	4 cut(s)	108, 204, 376, 495
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	62, 87, 441
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	150, 573
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	3 cut(s)	158, 555, 591
SsiI	CCGC	3 cut(s)	11, 244, 549
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	3 cut(s)	60, 85, 439
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	207, 516
TasI	AATT	3 cut(s)	158, 555, 591
TatI	WGTACW	2 cut(s)	303, 595
TfiI	GAWTC	2 cut(s)	263, 281
TscAI	CASTG	1 cut(s)	614
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspRI	CASTG	1 cut(s)	614
XceI	RCATGY	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	179
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.