Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009237

Physical Location & Seq

Genomic Coordinates Forward (+)

67968006 .. 67973025

Gene Structure 5020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG419800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGCACTATGTGGGATTGGTTTGAGTCCGAGTTTTGAGAGTTTTGAAGCTGTTTGCGTTGGGGGGAATTTTTCGACAAGGCTGATCAGACCGAGTGTGATGCGTGCGGTTGGTAAGTTATCTGATTGGAAGAGGAGACCGGGTTTGGGAGTACGGTGTTCATCATCATTGAAATTTGAGGAGAATGTTGGGAGAGACTTGGCAGTGCCTGTGGAGGAAGAATCTGGTCATGTCATGAAGTTCAAGATGTCCGATTTCAAAGTTCTCGACCGTGTTAGTGTTGGCCTTGGTGGAAGGGCAGGTGAAGTAGTTTATGAAGCTATAGTGAGTGATGCTAATAGTCCTTTGTATAGCACACAAGTCGTTCTTCGACGTCTCACTAGTGTTCGAGCTCAGCGTAGGGGTAGACGTGCAATAGAGGTGTTAAAGAAGTTAGTTCGCCGTAGGCTTTTGTACCATTCTTACTCAATGCAAGTTCATGGTTATATTTCTTCAGCTACAAGTAGTGGTCGCGGCTCATTCACTCTGGTCCACGGGTATCATGGTAGTTTTTCTTTAAGACATTGGCTTCAACAATCAGATTGGCTTCCAACCTTGGAGGCAACTCTTGCATTGGACAAGGAATCTGTTAGAAGGGTGGGAGATGACACAGTTGGGGGACCTGCAGTTTCTCGGCAATTGCGGATGATTAGATTATTAATGAGAGATCTCTTAATTGGAGTTAATTACTTGCACAGCCATGGACTTGCCCATACAGAGTTGAGGCTGGAAAATGTGCACATAAGCCCAGTGGATAGACACATAAAAGTAGGAATATTAGGAAATACTGCGGACTTTTATGAAAATAGTCCAAATGGTGGCACAATGGATGCTAACGTGGATAGGCGACAAATGATGATTGCATTTGATATGAGATGTCTTGGATTCATGATGGCAAAAATGGTGTTGCAGGAACTAATGGACCCCTCGATATTCTCAAAGTTCAAGTCATTTCTCACAAAGGGAAATGATCCTTCATGCTTGCGTGAATTTCTATTGCAAATACTTCAGAGGAATTCCTCATCTGGCAATGCTGGGCTCCAAATACTTGATAGGAATTGGGGTGCAGGGTGGCACCTTTTATCCTTGTTGCTAGCAACAAAACCTTCTAAAAGAGTAAGTTGCTTAGATGCTCTTACACACCCATTTTTATGTGGACCTCGATGGCGGGTAGTCCCATCCATTGATATCATCAGATGGGGTCTGGGTTCAACTGCATTGCGAATCTCAGAAGAGTATATCTATGGCCGGCCTCAGCGTAGCAGACTTTCCCACTTCATTGAGCTAATGGAGATGCTGAATCCTCATTCAAGGCCCAAGAACTGGCTGGAATTGCTGCCAGGAAAGTGGCGCTTATTGTACTCTACCGGGAGGCACATTGGCTTGACCTTTAGGCAACCTCTTGAACGAGTCCTTATTGGTAATGTGCACCTCACAGTGTCAAGAGTATCGAAGTTGAACACCAGCCTGTCGTTTACCTCTGACATTGGATTCAGAGTCATGATTGGTCAGAATTGGCCCCATGACAAGACCGGTGTAGATGGGAAACTGCAAGTTGACTCTATATTTAAACTGAAGGCTGGGAGGCGGTTATATCTGAAGGAAGAAGAAAACACCACAGGAATGCTATCATTGGGTTCATCAAATACTCACGATGCTTCTCATCAGAAATTATCAGGTAGAAAATGGAGGAAAGCACCATTCAAGGAGTTTCCGTCAAGCCTTCCGGTGGCAAAACTCGTTTCAAGTGAGATTGATAACATAACAATGAGTCTTGGTCATCCTTTAAGCTCAAATGTTGATAGTGCAAGAAATGTACTTCAAGAAGTTCGGACACAGGTCCCAACTGAGATGTTCGATTTGTCCAAGCTTGTGTGTGGAACATATGTGGACTCCAGGCTGTTAGTCATTCGCGGGGTAAATGGTTCTGCCCTCTTATTTACAAGATCTTGTTTCGATGAAATATGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin Pkinase

Protein Analysis

670

Amino Acids

75.21

Weight (kDa)

9.87

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	229 - 397	7.9e-06	Protein kinase domain
PAP_fibrillin	PF04755	432 - 658	5.7e-07	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53450 AT5G53450 AT5G53450
fragaria_vesca	FvH4_7g31750 FvH4_7g31750 FvH4_7g31750
malus_domestica	MD01G1219800.v1.1
prunus_persica	Prupe.2G311400_v2.0.a1 Prupe.2G311400_v2.0.a1
pyrus_communis	pycom01g22960
rosa_chinensis	RchiOBHm_Chr1g0380971
rosa_laevigata	RLG00000026255
rosa_multiflora	Rmu_sc0013826.1_g000005 Rmu_sc0013826.1_g000006
rosa_roxburghii	Rroxscaffold_4G00278890
rosa_rugosa	Rorug01G0426000 Rorug01G0426100
rosa_samantha	Rh1AG450000 Rh1BG405800 Rh1CG419800 Rh1DG436300
rosa_wichuraiana	Rw1G039200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AatII	GACGTC	1 cut(s)	376
Acc36I	ACCTGC	2 cut(s)	290, 670
AccB1I	GGYRCC	1 cut(s)	1113
AccB7I	CCANNNNNTGG	2 cut(s)	857, 1362
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	2 cut(s)	513, 1953
AciI	CCGC	7 cut(s)	107, 513, 682, 830, 1207, 1627, 1953
AclWI	GGATC	1 cut(s)	1004
AcoI	YGGCCR	1 cut(s)	1285
AcsI	RAATTY	4 cut(s)	67, 173, 1028, 1054
AcuI	CTGAAG	4 cut(s)	477, 1031, 1634, 1658
AcyI	GRCGYC	1 cut(s)	373
AdeI	CACNNNGTG	1 cut(s)	11
AfaI	GTAC	4 cut(s)	153, 455, 1400, 1857
AfiI	CCNNNNNNNGG	4 cut(s)	146, 857, 1362, 1768
AgeI	ACCGGT	1 cut(s)	1571
AhlI	ACTAGT	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	1378, 1934
AluBI	AGCT	7 cut(s)	50, 320, 392, 497, 1324, 1830, 1909
AluI	AGCT	7 cut(s)	50, 320, 392, 497, 1324, 1830, 1909
Alw21I	GWGCWC	3 cut(s)	394, 780, 1470
Alw26I	GTCTC	3 cut(s)	130, 189, 380
Alw44I	GTGCAC	2 cut(s)	776, 1466
AlwI	GGATC	1 cut(s)	1004
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	5 cut(s)	283, 1285, 1289, 1352, 1556
ApaLI	GTGCAC	2 cut(s)	776, 1466
ApeKI	GCWGC	1 cut(s)	1375
ApoI	RAATTY	4 cut(s)	67, 173, 1028, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	971, 1003
AseI	ATTAAT	1 cut(s)	698
AsiGI	ACCGGT	1 cut(s)	1571
AspLEI	GCGC	1 cut(s)	1392
AspS9I	GGNCC	7 cut(s)	529, 659, 961, 1196, 1353, 1557, 1879
AsuC2I	CCSGG	2 cut(s)	141, 1408
AsuHPI	GGTGA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	1132
AvaII	GGWCC	5 cut(s)	529, 659, 961, 1196, 1879
BaeGI	GKGCMC	2 cut(s)	780, 1470
BanI	GGYRCC	1 cut(s)	1113
BanII	GRGCYC	2 cut(s)	394, 1080
Bbv12I	GWGCWC	3 cut(s)	394, 780, 1470
BbvCI	CCTCAGC	1 cut(s)	1293
BbvI	GCAGC	1 cut(s)	1362
BccI	CCATC	5 cut(s)	925, 1197, 1225, 1230, 1574
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	4 cut(s)	82, 116, 343, 377
BciT130I	CCWGG	2 cut(s)	1380, 1936
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	2 cut(s)	141, 1408
BcoDI	GTCTC	3 cut(s)	130, 189, 380
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	2 cut(s)	381, 1133
BfmI	CTRYAG	2 cut(s)	321, 663
BfoI	RGCGCY	1 cut(s)	1393
BfuAI	ACCTGC	2 cut(s)	290, 670
BglII	AGATCT	2 cut(s)	706, 1985
BisI	GCNGC	2 cut(s)	514, 1376
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	2 cut(s)	515, 1377
Bme1390I	CCNGG	4 cut(s)	141, 1380, 1408, 1936
Bme18I	GGWCC	5 cut(s)	529, 659, 961, 1196, 1879
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	7 cut(s)	529, 659, 961, 1196, 1353, 1557, 1879
BmiI	GGNNCC	6 cut(s)	660, 963, 1079, 1115, 1559, 1881
BmrFI	CCNGG	4 cut(s)	141, 1380, 1408, 1936
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	6 cut(s)	90, 322, 859, 1159, 1323, 1684
BmtI	GCTAGC	1 cut(s)	1136
BmuI	ACTGGG	1 cut(s)	782
BoxI	GACNNNNGTC	1 cut(s)	1877
BpmI	CTGGAG	1 cut(s)	1918
Bpu10I	CCTNAGC	1 cut(s)	1293
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuMI	CCSGG	2 cut(s)	141, 1408
BsaHI	GRCGYC	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	4 cut(s)	286, 532, 594, 739
BsaWI	WCCGGW	2 cut(s)	1571, 1765
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 1739, 1769
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 857, 1362, 1768
Bse118I	RCCGGY	2 cut(s)	1287, 1571
Bse1I	ACTGG	2 cut(s)	788, 1367
Bse3DI	GCAATG	2 cut(s)	1075, 1256
BseBI	CCWGG	2 cut(s)	1380, 1936
BseDI	CCNNGG	4 cut(s)	286, 532, 594, 739
BseGI	GGATG	4 cut(s)	690, 874, 1217, 1819
BseLI	CCNNNNNNNGG	4 cut(s)	146, 857, 1362, 1768
BseMI	GCAATG	2 cut(s)	1075, 1256
BseMII	CTCAG	4 cut(s)	407, 1281, 1307, 1878
BseNI	ACTGG	2 cut(s)	788, 1367
BseRI	GAGGAG	2 cut(s)	148, 194
BseSI	GKGCMC	2 cut(s)	780, 1470
BseXI	GCAGC	1 cut(s)	1362
BseYI	CCCAGC	2 cut(s)	1073, 1619
BsgI	GTGCAG	1 cut(s)	1125
Bsh1236I	CGCG	2 cut(s)	513, 1953
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	5 cut(s)	285, 1287, 1291, 1354, 1558
BshNI	GGYRCC	1 cut(s)	1113
BshTI	ACCGGT	1 cut(s)	1571
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	3 cut(s)	394, 780, 1470
BsiSI	CCGG	5 cut(s)	140, 1288, 1407, 1572, 1766
BslFI	GGGAC	3 cut(s)	672, 1199, 1865
BslI	CCNNNNNNNGG	4 cut(s)	146, 857, 1362, 1768
BsmAI	GTCTC	3 cut(s)	130, 189, 380
BsmBI	CGTCTC	1 cut(s)	380
BsmFI	GGGAC	3 cut(s)	672, 1199, 1865
BsmI	GAATGC	1 cut(s)	1668
BsnI	GGCC	5 cut(s)	285, 1287, 1291, 1354, 1558
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	4 cut(s)	394, 780, 1080, 1470
Bsp143I	GATC	4 cut(s)	84, 706, 1009, 1985
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	739
BspACI	CCGC	7 cut(s)	107, 513, 682, 830, 1207, 1627, 1953
BspANI	GGCC	5 cut(s)	285, 1287, 1291, 1354, 1558
BspCNI	CTCAG	4 cut(s)	406, 1280, 1306, 1879
BspFNI	CGCG	2 cut(s)	513, 1953
BspHI	TCATGA	3 cut(s)	234, 927, 1539
BspLI	GGNNCC	6 cut(s)	660, 963, 1079, 1115, 1559, 1881
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	2 cut(s)	290, 670
BspOI	GCTAGC	1 cut(s)	1136
BspPI	GGATC	1 cut(s)	1004
BspT107I	GGYRCC	1 cut(s)	1113
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	2 cut(s)	1075, 1256
BsrFI	RCCGGY	2 cut(s)	1287, 1571
BsrI	ACTGG	2 cut(s)	788, 1367
BssAI	RCCGGY	2 cut(s)	1287, 1571
BssECI	CCNNGG	4 cut(s)	286, 532, 594, 739
BssMI	GATC	4 cut(s)	84, 706, 1009, 1985
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	3 cut(s)	286, 594, 739
Bst2UI	CCWGG	2 cut(s)	1380, 1936
Bst4CI	ACNGT	4 cut(s)	156, 272, 652, 1477
Bst6I	CTCTTC	2 cut(s)	125, 1266
BstACI	GRCGYC	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	105, 1022, 1134, 1289
BstDEI	CTNAG	5 cut(s)	393, 1165, 1267, 1293, 1887
BstDSI	CCRYGG	2 cut(s)	532, 739
BstF5I	GGATG	4 cut(s)	690, 874, 1217, 1819
BstFNI	CGCG	2 cut(s)	513, 1953
BstH2I	RGCGCY	1 cut(s)	1393
BstHHI	GCGC	1 cut(s)	1392
BstKTI	GATC	4 cut(s)	87, 709, 1012, 1988
BstMAI	GTCTC	3 cut(s)	130, 189, 380
BstMBI	GATC	4 cut(s)	84, 706, 1009, 1985
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 1372
BstNI	CCWGG	2 cut(s)	1380, 1936
BstPAI	GACNNNNGTC	1 cut(s)	1877
BstSCI	CCNGG	4 cut(s)	139, 1378, 1406, 1934
BstSFI	CTRYAG	2 cut(s)	321, 663
BstSLI	GKGCMC	2 cut(s)	780, 1470
BstUI	CGCG	2 cut(s)	513, 1953
BstV1I	GCAGC	1 cut(s)	1362
BstX2I	RGATCY	2 cut(s)	706, 1985
BstXI	CCANNNNNNTGG	1 cut(s)	1386
BstYI	RGATCY	2 cut(s)	706, 1985
BsuRI	GGCC	5 cut(s)	285, 1287, 1291, 1354, 1558
BtgI	CCRYGG	2 cut(s)	532, 739
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	4 cut(s)	690, 874, 1217, 1819
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	3 cut(s)	210, 795, 1482
BveI	ACCTGC	2 cut(s)	290, 670
Cac8I	GCNNGC	4 cut(s)	105, 1022, 1134, 1289
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	3 cut(s)	234, 927, 1539
CfoI	GCGC	1 cut(s)	1392
Cfr10I	RCCGGY	2 cut(s)	1287, 1571
Cfr13I	GGNCC	7 cut(s)	529, 659, 961, 1196, 1353, 1557, 1879
Csp6I	GTAC	4 cut(s)	152, 454, 1399, 1856
CspAI	ACCGGT	1 cut(s)	1571
CviAII	CATG	9 cut(s)	230, 235, 479, 542, 740, 928, 1017, 1540, 1562
CviQI	GTAC	4 cut(s)	152, 454, 1399, 1856
DdeI	CTNAG	5 cut(s)	393, 1165, 1267, 1293, 1887
DpnI	GATC	4 cut(s)	86, 708, 1011, 1987
DpnII	GATC	4 cut(s)	84, 706, 1009, 1985
DraI	TTTAAA	1 cut(s)	1609
DraIII	CACNNNGTG	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	1285
Eam1104I	CTCTTC	2 cut(s)	125, 1266
EarI	CTCTTC	2 cut(s)	125, 1266
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	3 cut(s)	286, 594, 739
Eco24I	GRGCYC	2 cut(s)	394, 1080
Eco31I	GGTCTC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	1228
Eco47I	GGWCC	5 cut(s)	529, 659, 961, 1196, 1879
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	4 cut(s)	477, 1031, 1634, 1658
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	2 cut(s)	659, 1879
EcoRI	GAATTC	1 cut(s)	1054
EcoRII	CCWGG	2 cut(s)	1378, 1934
EcoRV	GATATC	1 cut(s)	1228
EcoT14I	CCWWGG	3 cut(s)	286, 594, 739
EcoT38I	GRGCYC	2 cut(s)	394, 1080
ErhI	CCWWGG	3 cut(s)	286, 594, 739
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	9 cut(s)	233, 238, 482, 545, 743, 931, 1020, 1543, 1565
FalI	AAGNNNNNCTT	4 cut(s)	351, 383, 1376, 1408
FaqI	GGGAC	3 cut(s)	672, 1199, 1865
FatI	CATG	9 cut(s)	229, 234, 478, 541, 739, 927, 1016, 1539, 1561
FauI	CCCGC	2 cut(s)	1200, 1946
FauNDI	CATATG	1 cut(s)	1924
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	514, 1376
FokI	GGATG	4 cut(s)	697, 881, 1204, 1806
FriOI	GRGCYC	2 cut(s)	394, 1080
FseI	GGCCGGCC	1 cut(s)	1291
Fsp4HI	GCNGC	2 cut(s)	514, 1376
FspBI	CTAG	2 cut(s)	381, 1133
GlaI	GCGC	1 cut(s)	1391
GluI	GCNGC	2 cut(s)	514, 1376
GsaI	CCCAGC	2 cut(s)	1077, 1623
GsuI	CTGGAG	1 cut(s)	1918
HaeII	RGCGCY	1 cut(s)	1393
HaeIII	GGCC	5 cut(s)	285, 1287, 1291, 1354, 1558
HapII	CCGG	5 cut(s)	140, 1288, 1407, 1572, 1766
HhaI	GCGC	1 cut(s)	1392
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	9 cut(s)	233, 238, 482, 545, 743, 931, 1020, 1543, 1565
Hin6I	GCGC	1 cut(s)	1390
HinP1I	GCGC	1 cut(s)	1390
HincII	GTYRAC	1 cut(s)	1597
HindII	GTYRAC	1 cut(s)	1597
HindIII	AAGCTT	1 cut(s)	1907
HpaII	CCGG	5 cut(s)	140, 1288, 1407, 1572, 1766
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	8 cut(s)	407, 532, 778, 1196, 1468, 1515, 1597, 1930
Hpy188III	TCNNGA	9 cut(s)	235, 244, 266, 928, 1442, 1482, 1540, 1691, 1862
Hpy8I	GTNNAC	8 cut(s)	407, 532, 778, 1196, 1468, 1515, 1597, 1930
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	7 cut(s)	288, 627, 1023, 1155, 1609, 1633, 1772
HpyCH4III	ACNGT	4 cut(s)	156, 272, 652, 1477
HpyCH4IV	ACGT	3 cut(s)	373, 409, 876
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 1372
HpyF3I	CTNAG	5 cut(s)	393, 1165, 1267, 1293, 1887
HpySE526I	ACGT	3 cut(s)	373, 409, 876
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	9 cut(s)	233, 238, 482, 545, 743, 931, 1020, 1543, 1565
HspAI	GCGC	1 cut(s)	1390
KroI	GCCGGC	1 cut(s)	1287
KroNI	GCCGGC	1 cut(s)	1289
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 706, 1009, 1985
LmnI	GCTCC	1 cut(s)	1083
Lsp1109I	GCAGC	1 cut(s)	1362
LweI	GCATC	6 cut(s)	90, 322, 859, 1159, 1323, 1684
MaeI	CTAG	2 cut(s)	381, 1133
MaeII	ACGT	3 cut(s)	373, 409, 876
MalI	GATC	4 cut(s)	86, 708, 1011, 1987
MboI	GATC	4 cut(s)	84, 706, 1009, 1985
MboII	GAAGA	7 cut(s)	142, 230, 359, 483, 1283, 1655, 1658
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	2 cut(s)	706, 1985
MhlI	GDGCHC	4 cut(s)	394, 780, 1080, 1470
MlyI	GAGTC	6 cut(s)	34, 1458, 1545, 1592, 1819, 1925
MmeI	TCCRAC	1 cut(s)	614
MroNI	GCCGGC	1 cut(s)	1287
MseI	TTAA	7 cut(s)	425, 557, 698, 713, 723, 1608, 1826
MslI	CAYNNNNRTG	4 cut(s)	738, 1189, 1661, 1805
MspI	CCGG	5 cut(s)	140, 1288, 1407, 1572, 1766
MspR9I	CCNGG	4 cut(s)	141, 1380, 1408, 1936
MunI	CAATTG	1 cut(s)	677
Mva1269I	GAATGC	1 cut(s)	1668
MvaI	CCWGG	2 cut(s)	1380, 1936
MvnI	CGCG	2 cut(s)	513, 1953
MwoI	GCNNNNNNNGC	2 cut(s)	608, 1372
NaeI	GCCGGC	1 cut(s)	1289
NciI	CCSGG	2 cut(s)	141, 1408
NcoI	CCATGG	1 cut(s)	739
NdeI	CATATG	1 cut(s)	1924
NdeII	GATC	4 cut(s)	84, 706, 1009, 1985
NgoMIV	GCCGGC	1 cut(s)	1287
NheI	GCTAGC	1 cut(s)	1132
NlaIII	CATG	9 cut(s)	233, 238, 482, 545, 743, 931, 1020, 1543, 1565
NlaIV	GGNNCC	6 cut(s)	660, 963, 1079, 1115, 1559, 1881
NmeAIII	GCCGAG	1 cut(s)	652
PagI	TCATGA	3 cut(s)	234, 927, 1539
PaqCI	CACCTGC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	394
PctI	GAATGC	1 cut(s)	1668
PdiI	GCCGGC	1 cut(s)	1289
PfeI	GAWTC	6 cut(s)	221, 623, 924, 1263, 1339, 1530
PflMI	CCANNNNNTGG	2 cut(s)	857, 1362
PinAI	ACCGGT	1 cut(s)	1571
PkrI	GCNGC	2 cut(s)	515, 1377
PleI	GAGTC	6 cut(s)	33, 1457, 1544, 1592, 1818, 1925
PpsI	GAGTC	6 cut(s)	33, 1457, 1544, 1592, 1818, 1925
PpuMI	RGGWCCY	2 cut(s)	659, 1879
PshAI	GACNNNNGTC	1 cut(s)	1877
PshBI	ATTAAT	1 cut(s)	698
Psp124BI	GAGCTC	1 cut(s)	394
Psp5II	RGGWCCY	2 cut(s)	659, 1879
Psp6I	CCWGG	2 cut(s)	1378, 1934
PspFI	CCCAGC	2 cut(s)	1073, 1619
PspGI	CCWGG	2 cut(s)	1378, 1934
PspN4I	GGNNCC	6 cut(s)	660, 963, 1079, 1115, 1559, 1881
PspPI	GGNCC	7 cut(s)	529, 659, 961, 1196, 1353, 1557, 1879
PspPPI	RGGWCCY	2 cut(s)	659, 1879
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	706, 1985
RigI	GGCCGGCC	1 cut(s)	1291
RsaI	GTAC	4 cut(s)	153, 455, 1400, 1857
RsaNI	GTAC	4 cut(s)	152, 454, 1399, 1856
RseI	CAYNNNNRTG	4 cut(s)	738, 1189, 1661, 1805
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	7 cut(s)	425, 557, 698, 713, 723, 1608, 1826
SatI	GCNGC	2 cut(s)	514, 1376
Sau3AI	GATC	4 cut(s)	84, 706, 1009, 1985
Sau96I	GGNCC	7 cut(s)	529, 659, 961, 1196, 1353, 1557, 1879
SchI	GAGTC	6 cut(s)	34, 1458, 1545, 1592, 1819, 1925
ScrFI	CCNGG	4 cut(s)	141, 1380, 1408, 1936
SduI	GDGCHC	4 cut(s)	394, 780, 1080, 1470
SfaNI	GCATC	6 cut(s)	90, 322, 859, 1159, 1323, 1684
SfcI	CTRYAG	2 cut(s)	321, 663
SinI	GGWCC	5 cut(s)	529, 659, 961, 1196, 1879
SmiMI	CAYNNNNRTG	4 cut(s)	738, 1189, 1661, 1805
SpeI	ACTAGT	1 cut(s)	380
SsiI	CCGC	7 cut(s)	107, 513, 682, 830, 1207, 1627, 1953
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	2 cut(s)	381, 1133
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	4 cut(s)	139, 1378, 1406, 1934
StyI	CCWWGG	3 cut(s)	286, 594, 739
TaaI	ACNGT	4 cut(s)	156, 272, 652, 1477
TaiI	ACGT	3 cut(s)	376, 412, 879
TaqI	TCGA	9 cut(s)	74, 267, 370, 388, 968, 1201, 1490, 1896, 1995
TaqII	GACCGA	1 cut(s)	106
TatI	WGTACW	2 cut(s)	1398, 1855
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	6 cut(s)	221, 623, 924, 1263, 1339, 1530
Tru1I	TTAA	7 cut(s)	425, 557, 698, 713, 723, 1608, 1826
Tru9I	TTAA	7 cut(s)	425, 557, 698, 713, 723, 1608, 1826
TscAI	CASTG	3 cut(s)	210, 795, 1482
TseI	GCWGC	1 cut(s)	1375
TspGWI	ACGGA	1 cut(s)	1743
TspRI	CASTG	3 cut(s)	210, 795, 1482
Van91I	CCANNNNNTGG	2 cut(s)	857, 1362
VneI	GTGCAC	2 cut(s)	776, 1466
VpaK11BI	GGWCC	5 cut(s)	529, 659, 961, 1196, 1879
VspI	ATTAAT	1 cut(s)	698
XapI	RAATTY	4 cut(s)	67, 173, 1028, 1054
XcmI	CCANNNNNNNNNTGG	2 cut(s)	539, 1363
XmiI	GTMKAC	1 cut(s)	406
XspI	CTAG	2 cut(s)	381, 1133
ZraI	GACGTC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.