Rorug02G0012300

Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
1073755 .. 1076710
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0012300.1

Sequence Viewer

Length: 855 bp
ATGGAGAAGAAACGTTTATGGGTTCCCACTATTGTGGCACAAGTGTGTCTCTGCTTTGGTCTCTACCTTGCTTTTCAACTGGGTCAGCCTCAGAACTCTGTGAACCTCCATAGAAGAAGTGAAAGCAGAGATCTTTACTTCATCAGCGTCAGAGGAGGCTTCAGACCTCTCAAGCAACAGACCCATCTTCTCAAACGGATGGAGAAGGTGGCAAAGAAGTACAAGGCAAAGTTTGTAGTGGACATCAGTGATCTTGGGAAAGATGATCCGCTCATGCAGAATGGTACCCTGCATTTCTCATCATTAAAGGTTCCCTGGTATACTACTACAGTTTCAGGCAGATATGGAGGGGGTTACTTCCAGAAGCAGATAAGACTACCTTACGAGAAAACCTTAGACCTCATTGGTGTGGATACTGGGTCATTAGAGGGGAAGGTTTTAATCTCGGGATCATCAAGTGAGTTTGGATTCAATCAGTTACATTGGCTGACAAGGACACTAGAGGAAACCAGTAGTGACTGGTGCATAGTTGTTGGATTCCACCCATTGGCTAAATGTGAAGATAGTGAAGAGGGAATGGAAGCAAAGCAAGTCTTTGAGTCTCTACATCATAGTTTTATGAAATATGAAGTGAATGCATATATAAGTGAGCGGGGTTGCACTAGCGATGTCCAACAAGGTACTCTGAGCTACATTGGGAACCCGGGCTCAACAAATGCACTAGCTTTTGTAAATGAGACATCAATATTTAGGAGTTTTATCTTACAAAACACCGCAATCCCTTGTATGGAGTTAACAGACGGATGCATTTTTATGTCTTCACTTTTCGGGTTTGCAGGTAACCTACTTTGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

284

Amino Acids

31.97

Weight (kDa)

7.58

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016610)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56120
fragaria_vesca FvH4_1g05380
malus_domestica MD02G1062400.v1.1
pyrus_communis pycom02g04360
rosa_chinensis RchiOBHm_Chr2g0091071
rosa_laevigata RLG00000016174
rosa_multiflora Rmu_sc0005171.1_g000009
rosa_roxburghii Rroxscaffold_2G00150620
rosa_rugosa Rorug02G0012300
rosa_samantha Rh2AG058400 Rh2BG056800 Rh2CG059000 Rh2DG058300
rosa_wichuraiana Rw2G005080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 827
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 2 cut(s) 271, 652
AccI GTMKAC 1 cut(s) 320
AciI CCGC 3 cut(s) 269, 652, 774
AclI AACGTT 1 cut(s) 13
AclWI GGATC 2 cut(s) 260, 457
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 3 cut(s) 221, 286, 682
AfiI CCNNNNNNNGG 2 cut(s) 547, 787
AgsI TTSAA 2 cut(s) 77, 472
AjnI CCWGG 1 cut(s) 314
AleI CACNNNNGTG 2 cut(s) 32, 43
AluBI AGCT 2 cut(s) 690, 725
AluI AGCT 2 cut(s) 690, 725
Alw26I GTCTC 4 cut(s) 53, 65, 606, 731
AlwI GGATC 2 cut(s) 260, 457
Ama87I CYCGRG 2 cut(s) 445, 703
Asp718I GGTACC 1 cut(s) 284
AsuC2I CCSGG 2 cut(s) 704, 705
AvaI CYCGRG 2 cut(s) 445, 703
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 710
BbsI GAAGAC 1 cut(s) 810
BccI CCATC 2 cut(s) 192, 193
BciT130I CCWGG 1 cut(s) 316
BciVI GTATCC 1 cut(s) 406
BcnI CCSGG 2 cut(s) 704, 705
BcoDI GTCTC 4 cut(s) 53, 65, 606, 731
BfaI CTAG 3 cut(s) 500, 663, 722
BfmI CTRYAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 827
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 316, 704, 705
BmeT110I CYCGRG 2 cut(s) 445, 703
BmiI GGNNCC 4 cut(s) 24, 286, 312, 701
BmrFI CCNGG 3 cut(s) 316, 704, 705
BmrI ACTGGG 2 cut(s) 89, 426
BmsI GCATC 1 cut(s) 794
BmuI ACTGGG 2 cut(s) 89, 426
BpiI GAAGAC 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 2 cut(s) 704, 705
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 314, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 787
Bse1I ACTGG 4 cut(s) 84, 421, 510, 524
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 314, 703
BseGI GGATG 2 cut(s) 204, 809
BseLI CCNNNNNNNGG 2 cut(s) 547, 787
BseMII CTCAG 2 cut(s) 104, 677
BseNI ACTGG 4 cut(s) 84, 421, 510, 524
BseRI GAGGAG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 445, 703
BsiSI CCGG 1 cut(s) 704
BslI CCNNNNNNNGG 2 cut(s) 547, 787
BsmAI GTCTC 4 cut(s) 53, 65, 606, 731
BsmI GAATGC 1 cut(s) 640
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 2 cut(s) 445, 703
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 4 cut(s) 130, 250, 265, 449
BspACI CCGC 3 cut(s) 269, 652, 774
BspCNI CTCAG 2 cut(s) 103, 678
BspLI GGNNCC 4 cut(s) 24, 286, 312, 701
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 260, 457
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 65
BsrBI CCGCTC 2 cut(s) 271, 652
BsrI ACTGG 4 cut(s) 84, 421, 510, 524
BssECI CCNNGG 2 cut(s) 314, 703
BssMI GATC 4 cut(s) 130, 250, 265, 449
BssNAI GTATAC 1 cut(s) 321
Bst1107I GTATAC 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 564
BstDEI CTNAG 3 cut(s) 90, 394, 686
BstEII GGTNACC 1 cut(s) 839
BstF5I GGATG 2 cut(s) 204, 809
BstKTI GATC 4 cut(s) 133, 253, 268, 452
BstMAI GTCTC 4 cut(s) 53, 65, 606, 731
BstMBI GATC 4 cut(s) 130, 250, 265, 449
BstNI CCWGG 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 3 cut(s) 314, 702, 703
BstSFI CTRYAG 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 810
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 34
BstYI RGATCY 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 406
BtgZI GCGATG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 204, 809
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 827
Cfr9I CCCGGG 1 cut(s) 703
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 220, 285, 681
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 88, 159, 487, 551, 690, 708, 725
CviKI_1 RGCY 7 cut(s) 88, 159, 487, 551, 690, 708, 725
CviQI GTAC 3 cut(s) 220, 285, 681
DdeI CTNAG 3 cut(s) 90, 394, 686
DpnI GATC 4 cut(s) 132, 252, 267, 451
DpnII GATC 4 cut(s) 130, 250, 265, 449
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 145
Eco88I CYCGRG 2 cut(s) 445, 703
Eco91I GGTNACC 1 cut(s) 839
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 314
EcoT22I ATGCAT 2 cut(s) 640, 809
EcoT38I GRGCYC 1 cut(s) 710
FaeI CATG 1 cut(s) 277
FalI AAGNNNNNCTT 4 cut(s) 364, 396, 578, 610
FatI CATG 1 cut(s) 273
FauI CCCGC 1 cut(s) 645
FblI GTMKAC 1 cut(s) 320
FokI GGATG 2 cut(s) 211, 816
FriOI GRGCYC 1 cut(s) 710
FspBI CTAG 3 cut(s) 500, 663, 722
HapII CCGG 1 cut(s) 704
HgaI GACGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 277
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HinfI GANTC 3 cut(s) 468, 537, 599
HpaI GTTAAC 1 cut(s) 795
HpaII CCGG 1 cut(s) 704
Hpy166II GTNNAC 4 cut(s) 103, 241, 321, 795
Hpy188I TCNGA 4 cut(s) 93, 152, 164, 687
Hpy188III TCNNGA 2 cut(s) 361, 447
Hpy8I GTNNAC 4 cut(s) 103, 241, 321, 795
HpyAV CCTTC 2 cut(s) 199, 427
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 8 cut(s) 277, 292, 525, 638, 660, 719, 807, 836
HpyF3I CTNAG 3 cut(s) 90, 394, 686
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 277
KpnI GGTACC 1 cut(s) 288
KspAI GTTAAC 1 cut(s) 795
Kzo9I GATC 4 cut(s) 130, 250, 265, 449
LweI GCATC 1 cut(s) 794
MaeI CTAG 3 cut(s) 500, 663, 722
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 4 cut(s) 353, 477, 515, 839
MalI GATC 4 cut(s) 132, 252, 267, 451
MbiI CCGCTC 2 cut(s) 271, 652
MboI GATC 4 cut(s) 130, 250, 265, 449
MboII GAAGA 6 cut(s) 19, 126, 179, 572, 581, 810
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 710
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 2 cut(s) 514, 697
Mph1103I ATGCAT 2 cut(s) 640, 809
MseI TTAA 3 cut(s) 305, 440, 794
MslI CAYNNNNRTG 4 cut(s) 32, 43, 407, 812
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 3 cut(s) 316, 704, 705
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 1 cut(s) 316
NciI CCSGG 2 cut(s) 704, 705
NdeII GATC 4 cut(s) 130, 250, 265, 449
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 4 cut(s) 24, 286, 312, 701
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 2 cut(s) 640, 809
OliI CACNNNNGTG 2 cut(s) 32, 43
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 2 cut(s) 468, 537
PflMI CCANNNNNTGG 1 cut(s) 547
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp1406I AACGTT 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 314
PspEI GGTNACC 1 cut(s) 839
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 4 cut(s) 24, 286, 312, 701
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 3 cut(s) 221, 286, 682
RsaNI GTAC 3 cut(s) 220, 285, 681
RseI CAYNNNNRTG 4 cut(s) 32, 43, 407, 812
SaqAI TTAA 3 cut(s) 305, 440, 794
Sau3AI GATC 4 cut(s) 130, 250, 265, 449
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 3 cut(s) 316, 704, 705
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 794
SfcI CTRYAG 1 cut(s) 327
SmaI CCCGGG 1 cut(s) 705
SmiMI CAYNNNNRTG 4 cut(s) 32, 43, 407, 812
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SsiI CCGC 3 cut(s) 269, 652, 774
SspI AATATT 1 cut(s) 747
SspMI CTAG 3 cut(s) 500, 663, 722
StyD4I CCNGG 3 cut(s) 314, 702, 703
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 16
TatI WGTACW 1 cut(s) 219
TfiI GAWTC 2 cut(s) 468, 537
Tru1I TTAA 3 cut(s) 305, 440, 794
Tru9I TTAA 3 cut(s) 305, 440, 794
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 3 cut(s) 130, 635, 642
TspGWI ACGGA 2 cut(s) 211, 816
TspMI CCCGGG 1 cut(s) 703
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 547
XmaI CCCGGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 3 cut(s) 500, 663, 722
Zsp2I ATGCAT 2 cut(s) 640, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.