Rorug02G0324900

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008150
Physical Location & Seq
Forward (+)
39804129 .. 39804793
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0324900.1

Sequence Viewer

Length: 384 bp
ATGGCTGCTCTTCCTTTTTGTTATGTCTGTGTAACAAGTCTTCTTGTGCTTGTTCCTGTGCTGCTGCTTTGTTCATCATTAGGGAAGGCTCAGACGACGGAGTACTGCATGAATGTGTTCGAGGAATTTAGCTCTTGCCTGAGTTTTGTCGGGGAGTTATCTCCTGAACCGACGGCGGCTTGCTGTGATTCCCTGACAAGTTTGAATTCGTTAGCACAACAAGAGGAGAGTGGTCCGAGGATGATATGTGAATGCATTGAGAGCTCGTCTTATTGGACCAGAATCCCTTTCAGTGCCTCCCGAATTCAGGAGCTCCCTACATCATGCCAACTCCATCTTAGTTTCCCCATTTCTAATAGCATGGATTGCTCCAAGCTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 Pkinase

Protein Analysis

127

Amino Acids

13.88

Weight (kDa)

4.4

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 36 - 123 1.2e-06 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 176
AcsI RAATTY 3 cut(s) 125, 205, 303
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 4 cut(s) 132, 264, 313, 376
AluI AGCT 4 cut(s) 132, 264, 313, 376
Alw21I GWGCWC 2 cut(s) 266, 315
ApeKI GCWGC 3 cut(s) 5, 61, 64
ApoI RAATTY 3 cut(s) 125, 205, 303
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 233, 276
AvaII GGWCC 2 cut(s) 233, 276
BanII GRGCYC 2 cut(s) 266, 315
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 2 cut(s) 266, 315
BbvI GCAGC 2 cut(s) 48, 51
BccI CCATC 1 cut(s) 342
BceAI ACGGC 1 cut(s) 189
BisI GCNGC 4 cut(s) 6, 62, 65, 177
BlsI GCNGC 4 cut(s) 7, 63, 66, 178
BmcAI AGTACT 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 233, 276
BmgT120I GGNCC 2 cut(s) 233, 276
BpiI GAAGAC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 104, 131
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 48, 51
BsiHKAI GWGCWC 2 cut(s) 266, 315
BslI CCNNNNNNNGG 1 cut(s) 307
BsmI GAATGC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 266, 315
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 103, 132
BspQI GCTCTTC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 3 cut(s) 90, 140, 338
BstF5I GGATG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 261, 366
BstV1I GCAGC 2 cut(s) 48, 51
BstV2I GAAGAC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 233, 276
Csp6I GTAC 1 cut(s) 103
CviAII CATG 3 cut(s) 109, 324, 361
CviJI RGCY 7 cut(s) 5, 89, 132, 179, 264, 313, 376
CviKI_1 RGCY 7 cut(s) 5, 89, 132, 179, 264, 313, 376
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 3 cut(s) 90, 140, 338
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 2 cut(s) 264, 313
Eco24I GRGCYC 2 cut(s) 266, 315
Eco47I GGWCC 2 cut(s) 233, 276
Eco53kI GAGCTC 2 cut(s) 264, 313
EcoICRI GAGCTC 2 cut(s) 264, 313
EcoRI GAATTC 2 cut(s) 205, 303
EcoT22I ATGCAT 1 cut(s) 257
EcoT38I GRGCYC 2 cut(s) 266, 315
FaeI CATG 3 cut(s) 112, 327, 364
FaiI YATR 5 cut(s) 24, 110, 247, 325, 362
FatI CATG 3 cut(s) 108, 323, 360
Fnu4HI GCNGC 4 cut(s) 6, 62, 65, 177
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 2 cut(s) 266, 315
Fsp4HI GCNGC 4 cut(s) 6, 62, 65, 177
GluI GCNGC 4 cut(s) 6, 62, 65, 177
Hin1II CATG 3 cut(s) 112, 327, 364
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 2 cut(s) 188, 282
Hpy188I TCNGA 2 cut(s) 93, 237
Hpy188III TCNNGA 3 cut(s) 164, 300, 308
Hpy99I CGWCG 2 cut(s) 100, 175
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 108, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 366
HpyF3I CTNAG 3 cut(s) 90, 140, 338
Hsp92II CATG 3 cut(s) 112, 327, 364
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 310, 318, 374
LpnPI CCDG 6 cut(s) 69, 152, 177, 206, 292, 293
Lsp1109I GCAGC 2 cut(s) 48, 51
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 266, 315
MluCI AATT 4 cut(s) 125, 205, 303, 379
MnlI CCTC 4 cut(s) 115, 217, 231, 307
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 2 cut(s) 261, 366
NlaIII CATG 3 cut(s) 112, 327, 364
NsiI ATGCAT 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 188, 282
PkrI GCNGC 4 cut(s) 7, 63, 66, 178
Psp124BI GAGCTC 2 cut(s) 266, 315
PspPI GGNCC 2 cut(s) 233, 276
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 2 cut(s) 266, 315
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 6, 62, 65, 177
Sau96I GGNCC 2 cut(s) 233, 276
ScaI AGTACT 1 cut(s) 104
SduI GDGCHC 2 cut(s) 266, 315
SetI ASST 4 cut(s) 134, 266, 315, 378
SinI GGWCC 2 cut(s) 233, 276
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 4 cut(s) 125, 205, 303, 379
SsiI CCGC 1 cut(s) 176
SstI GAGCTC 2 cut(s) 266, 315
TaqI TCGA 1 cut(s) 120
TasI AATT 4 cut(s) 125, 205, 303, 379
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 188, 282
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 298
TseI GCWGC 3 cut(s) 5, 61, 64
TspDTI ATGAA 2 cut(s) 63, 125
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 233, 276
XapI RAATTY 3 cut(s) 125, 205, 303
XmnI GAANNNNTTC 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.