Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008150

Physical Location & Seq

Genomic Coordinates Reverse (-)

39878644 .. 39879678

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0325100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTAACTCCAAAGTGCCCAGCAGCTCTACCGCTGAGGGAGGAGTTCACTCCTCCCTTCCTGACCTCAACGAGGCATTCGTGGAGAATGAGGCTGGAGAAAGTAATGTTGCTTTTGCTATTGGCGAGGAGGAGAGGGCCAATTCCAAGAAAAGAAAGGTGGAGGCTACTATTCTTATCGGTCAGGCTCAGGCTGACTATGCCAAGAAACATTGTAAGGAGGCGGAAGCCGAGTTTCAGAAGACGGTGGAGTCTCTAAGGGAAATGGTTGCAAATTTCTGTACGGACATGCTAACTCTGATGGACAAATTAGCGAAGCAGCCTCCATGCAAAGGGCCTGAAATTATAGATCCTCCCCCCGCGGCCTTTAAGCCCAGTAGCTCTACCTCTGAGGGAGGAGTGAAGCCCTCCCTTCCTGACCTCAACGAGGCATTCGTGGAGAATGAGGCTGGAGAAAGTAATGTAGCTTTCGCTATTGGCGAGGAGGACAAGGCCAATTCCAAGAAAAGGAAGGTGGAGGCTACTAGTGGTGGGGAAGGACCGAAGGACATCATGCCAACTTTTCCAGCAATCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_1 Pkinase

Protein Analysis

192

Amino Acids

20.49

Weight (kDa)

4.84

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008150)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29821 FvH4_6g29840
malus_domestica	MD17G1210300.v1.1
prunus_persica	Prupe.3G085600_v2.0.a1
pyrus_communis	pycom17g21560
rosa_chinensis	RchiOBHm_Chr2g0135701
rosa_laevigata	RLG00000019478 RLG00000019479
rosa_multiflora	Rmu_co8459773.1_g000001 Rmu_sc0002398.1_g000047 Rmu_sc0007848.1_g000046
rosa_roxburghii	Rroxscaffold_2G00108980 Rroxscaffold_2G00109000
rosa_rugosa	Rorug02G0324900 Rorug02G0325100
rosa_samantha	Rh2AG377400 Rh2AG377500 Rh2BG383700 Rh2BG383800 Rh2CG362900 Rh2CG363000 Rh2DG400100
rosa_wichuraiana	Rw2G030740 Rw2G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	250
AccII	CGCG	1 cut(s)	362
AciI	CCGC	4 cut(s)	33, 224, 360, 362
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	4 cut(s)	73, 332, 427, 507
AhlI	ACTAGT	1 cut(s)	524
AluBI	AGCT	3 cut(s)	27, 381, 467
AluI	AGCT	3 cut(s)	27, 381, 467
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	4 cut(s)	138, 335, 363, 492
ApeKI	GCWGC	2 cut(s)	24, 319
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	3 cut(s)	138, 335, 539
AvaII	GGWCC	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	36, 331
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	1 cut(s)	525
BisI	GCNGC	3 cut(s)	25, 320, 363
BlsI	GCNGC	3 cut(s)	26, 321, 364
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	3 cut(s)	138, 335, 539
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	248
BpmI	CTGGAG	2 cut(s)	117, 471
Bpu10I	CCTNAGC	2 cut(s)	36, 189
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 332, 427, 507
Bse1I	ACTGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	73, 332, 427, 507
BseMII	CTCAG	3 cut(s)	27, 203, 381
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	6 cut(s)	43, 57, 143, 146, 411, 497
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	36, 331
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	4 cut(s)	140, 337, 365, 494
BslI	CCNNNNNNNGG	4 cut(s)	73, 332, 427, 507
BsmAI	GTCTC	1 cut(s)	258
BsmI	GAATGC	2 cut(s)	77, 431
BsnI	GGCC	4 cut(s)	140, 337, 365, 494
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	4 cut(s)	33, 224, 360, 362
BspANI	GGCC	4 cut(s)	140, 337, 365, 494
BspCNI	CTCAG	3 cut(s)	28, 202, 382
BspFNI	CGCG	1 cut(s)	362
BspPI	GGATC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	4 cut(s)	36, 189, 257, 390
BstDSI	CCRYGG	1 cut(s)	360
BstENI	CCTNNNNNAGG	2 cut(s)	71, 425
BstFNI	CGCG	1 cut(s)	362
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	36, 331
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	140, 337, 365, 494
BtgI	CCRYGG	1 cut(s)	360
Cfr13I	GGNCC	3 cut(s)	138, 335, 539
Cfr42I	CCGCGG	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	3 cut(s)	289, 327, 553
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	4 cut(s)	36, 189, 257, 390
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	539
EcoNI	CCTNNNNNAGG	2 cut(s)	71, 425
EcoO109I	RGGNCCY	1 cut(s)	335
FaeI	CATG	3 cut(s)	292, 330, 556
FaiI	YATR	5 cut(s)	201, 290, 328, 347, 554
FatI	CATG	3 cut(s)	288, 326, 552
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	25, 320, 363
Fsp4HI	GCNGC	3 cut(s)	25, 320, 363
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	3 cut(s)	25, 320, 363
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	2 cut(s)	117, 471
HaeIII	GGCC	4 cut(s)	140, 337, 365, 494
Hin1II	CATG	3 cut(s)	292, 330, 556
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	240, 300, 391
Hpy188III	TCNNGA	2 cut(s)	62, 416
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	68, 422, 505, 530, 538
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	272, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	4 cut(s)	36, 189, 257, 390
Hsp92II	CATG	3 cut(s)	292, 330, 556
KspI	CCGCGG	1 cut(s)	363
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	34, 75, 81, 170, 176, 351, 388, 429, 435
Lsp1109I	GCAGC	2 cut(s)	36, 331
MaeI	CTAG	1 cut(s)	525
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	1 cut(s)	253
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	5 cut(s)	142, 274, 308, 342, 496
MlyI	GAGTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	6, 369
MspA1I	CMGCKG	2 cut(s)	35, 362
Mva1269I	GAATGC	2 cut(s)	77, 431
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	292, 330, 556
NmeAIII	GCCGAG	1 cut(s)	256
NspI	RCATGY	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 432, 477
PctI	GAATGC	2 cut(s)	77, 431
PkrI	GCNGC	3 cut(s)	26, 321, 364
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	20
PspPI	GGNCC	3 cut(s)	138, 335, 539
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	6, 369
SatI	GCNGC	3 cut(s)	25, 320, 363
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	3 cut(s)	138, 335, 539
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	29, 69, 162, 383, 389, 423, 469, 516
Sfr303I	CCGCGG	1 cut(s)	363
SgrBI	CCGCGG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	539
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	5 cut(s)	142, 274, 308, 342, 496
SsiI	CCGC	4 cut(s)	33, 224, 360, 362
SspMI	CTAG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	247
TaqII	GACCGA	2 cut(s)	170, 556
TasI	AATT	5 cut(s)	142, 274, 308, 342, 496
TauI	GCSGC	1 cut(s)	365
Tru1I	TTAA	2 cut(s)	6, 369
Tru9I	TTAA	2 cut(s)	6, 369
TseI	GCWGC	2 cut(s)	24, 319
TspGWI	ACGGA	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	539
XagI	CCTNNNNNAGG	2 cut(s)	71, 425
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.