Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004927

Physical Location & Seq

Genomic Coordinates Reverse (-)

41740977 .. 41746811

Gene Structure 5835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATAACTATGGATGTCAAAGGTATAAACTGGGTTGGGTGTGTGTACGAGAAATTTGAATCTATGTGCTTGGAGGTGGAAGAAAATATGTACCAGGACACAGTTAAATTTGTTGAAGATCAGGTACAGACTGTTGGGGAGAGTGTTAAAAAGTTATATGCAGATATAATGCAAGATTTGCTCTGTGACTCTTCATTGGATGGAGAGAATATATCAGCTTGTGGTTTTCCTATTGAACATTATTCAGATGTTGATAATTCTAAGAAATCAAAGATTATAAAAACGAAAGCACATGTAAAGGTTGGTGTTGAAGAAGTAAATGGGGATTCAGAGGTGATTTCTCTTGTGGAGAAGGATGTGGAACATACAGGATTGTTCCATAGACAGCGCATGTATGATTCTTGCACAAGATCCTCAGGCGATTGTGCTAAAGTAGCATGCTCTGACTTGTACTCAAGACAAGACCATGGCATGAGAAGCTATAACAAAAAAAATTTGGTTGTCAAACAAACTCCTATCAAGGACAGATTGCCAGGGGCAAATACTGCTGTTGGAAAAGATTTTAACAGAGTATCACTATCATGCAGTGAATTTTCAAATGAAAACCGTGATGCTTCATGTGACCAACCAGATGAAGTTATAACTCCTACAGCGGAAGGTATGAGATGTGATTCCATGAGGGAAAGTTGTGTGGTTGCGAATGCTAGCCAATGTTCAGATGATGTTTCAATTAACTGCCAATCATCTGATTTGATTGTTTTTGATAAATCGGATGGAAAAAGATGGAATGAACTGTTAGAGTCATCGATTGGTGGATCTAATGACTCCAGTGTGCATGCAATTGATAGCAATATTGGTGTGCATGGAACGGAAATCAGTCAACAATCTGACAAGGCAAAGCTCGAGGAAACTTGTGTGATGGTCAGTGGTGAAGAGCTTCATTTTGTTCATCACGTGGTAGCCAACTGTAAGCCTTACAAGAAAAAAATTCCAAAAGCCTTCACTTCAAGAACGAGTTCAGCAAGGAAACAAGAATATGAGCAGCTTGCATTATGGCATGGGCATCATACAAAATCATTTTTAGGTGGAGAAGATTCAAAGAAATCCCCGACTCGTGATTTTTGCGAATCTGAATGGGAAATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006873 GO:0006885 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015238 GO:0015318 GO:0015562 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0051716 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0080139 GO:0098656 GO:0098660 GO:0098661 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

382

Amino Acids

42.64

Weight (kDa)

5.2

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15460 AT1G15460 AT1G15460 AT1G15460 AT1G74810 AT1G74810 AT1G74810 AT1G74810 AT1G74810 AT1G74810 AT1G74810
fragaria_vesca	FvH4_6g30530 FvH4_6g30530
malus_domestica	MD09G1219100.v1.1 MD17G1202200.v1.1
prunus_persica	Prupe.3G077900_v2.0.a1 Prupe.3G077900_v2.0.a1
pyrus_communis	pycom17g20650
rosa_chinensis	RchiOBHm_Chr2g0136951
rosa_laevigata	RLG00000019590
rosa_multiflora	Rmu_sc0001374.1_g000070
rosa_roxburghii	Rroxscaffold_2G00107860
rosa_rugosa	Rorug02G0335500 Rorug02G0335500 Rorug02G0335500 Rorug02G0335600
rosa_samantha	Rh2AG385500 Rh2BG392500 Rh2CG372700
rosa_wichuraiana	Rw2G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	278, 641
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	2 cut(s)	405, 823
AcsI	RAATTY	6 cut(s)	53, 107, 493, 590, 987, 1140
AcvI	CACGTG	1 cut(s)	955
AfaI	GTAC	4 cut(s)	47, 92, 126, 452
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	8 cut(s)	59, 116, 236, 311, 597, 729, 1008, 1098
AjnI	CCWGG	2 cut(s)	93, 532
AluBI	AGCT	5 cut(s)	218, 480, 901, 937, 1045
AluI	AGCT	5 cut(s)	218, 480, 901, 937, 1045
AlwI	GGATC	2 cut(s)	405, 823
Ama87I	CYCGRG	1 cut(s)	902
ApeKI	GCWGC	1 cut(s)	1042
ApoI	RAATTY	6 cut(s)	53, 107, 493, 590, 987, 1140
Asp700I	GAANNNNTTC	2 cut(s)	936, 1015
AspLEI	GCGC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	346, 941
AsuNHI	GCTAGC	1 cut(s)	704
AvaI	CYCGRG	1 cut(s)	902
AxyI	CCTNAGG	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	108, 140
BauI	CACGAG	1 cut(s)	1113
BbrPI	CACGTG	1 cut(s)	955
BbvI	GCAGC	1 cut(s)	1054
BccI	CCATC	4 cut(s)	194, 767, 777, 913
BciT130I	CCWGG	2 cut(s)	95, 534
BfaI	CTAG	2 cut(s)	705, 1147
BfmI	CTRYAG	1 cut(s)	648
BisI	GCNGC	1 cut(s)	1043
BlsI	GCNGC	1 cut(s)	1044
Bme1390I	CCNGG	2 cut(s)	95, 534
BmeT110I	CYCGRG	1 cut(s)	902
BmrFI	CCNGG	2 cut(s)	95, 534
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	601, 1072
BmtI	GCTAGC	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	811
BpuEI	CTTGAG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	806
BsaAI	YACGTR	1 cut(s)	955
BsaJI	CCNNGG	2 cut(s)	466, 533
Bse1I	ACTGG	2 cut(s)	35, 828
Bse21I	CCTNAGG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	95, 534
BseCI	ATCGAT	1 cut(s)	806
BseDI	CCNNGG	2 cut(s)	466, 533
BseGI	GGATG	4 cut(s)	19, 205, 361, 778
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	35, 828
BseXI	GCAGC	1 cut(s)	1054
BshVI	ATCGAT	1 cut(s)	806
BsiHKCI	CYCGRG	1 cut(s)	902
BsmI	GAATGC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	902
Bsp143I	GATC	3 cut(s)	118, 410, 815
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	428
BspDI	ATCGAT	1 cut(s)	806
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	2 cut(s)	405, 823
BspQI	GCTCTTC	1 cut(s)	927
BsrI	ACTGG	2 cut(s)	35, 828
BssECI	CCNNGG	2 cut(s)	466, 533
BssMI	GATC	3 cut(s)	118, 410, 815
BssSI	CACGAG	1 cut(s)	1113
BssT1I	CCWWGG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	1113
Bst2UI	CCWGG	2 cut(s)	95, 534
Bst4CI	ACNGT	5 cut(s)	103, 133, 608, 795, 968
Bst6I	CTCTTC	2 cut(s)	196, 927
BstAPI	GCANNNNNTGC	2 cut(s)	178, 545
BstBAI	YACGTR	1 cut(s)	955
BstC8I	GCNNGC	4 cut(s)	439, 706, 837, 1047
BstDEI	CTNAG	2 cut(s)	261, 415
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	4 cut(s)	19, 205, 361, 778
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	121, 413, 818
BstMBI	GATC	3 cut(s)	118, 410, 815
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
BstNI	CCWGG	2 cut(s)	95, 534
BstNSI	RCATGY	4 cut(s)	296, 394, 441, 839
BstSCI	CCNGG	2 cut(s)	93, 532
BstSFI	CTRYAG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	1054
BstX2I	RGATCY	2 cut(s)	410, 815
BstYI	RGATCY	2 cut(s)	410, 815
Bsu15I	ATCGAT	1 cut(s)	806
Bsu36I	CCTNAGG	1 cut(s)	415
BsuTUI	ATCGAT	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	4 cut(s)	19, 205, 361, 778
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	592, 835, 931
Cac8I	GCNNGC	4 cut(s)	439, 706, 837, 1047
CfoI	GCGC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	806
Csp6I	GTAC	4 cut(s)	46, 91, 125, 451
CviJI	RGCY	9 cut(s)	218, 480, 708, 901, 937, 962, 973, 998, 1045
CviKI_1	RGCY	9 cut(s)	218, 480, 708, 901, 937, 962, 973, 998, 1045
CviQI	GTAC	4 cut(s)	46, 91, 125, 451
DdeI	CTNAG	2 cut(s)	261, 415
DpnI	GATC	3 cut(s)	120, 412, 817
DpnII	GATC	3 cut(s)	118, 410, 815
Eam1104I	CTCTTC	2 cut(s)	196, 927
EarI	CTCTTC	2 cut(s)	196, 927
Eco130I	CCWWGG	1 cut(s)	466
Eco72I	CACGTG	1 cut(s)	955
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	93, 532
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	1043
FokI	GGATG	4 cut(s)	26, 212, 368, 785
Fsp4HI	GCNGC	1 cut(s)	1043
FspBI	CTAG	2 cut(s)	705, 1147
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	1 cut(s)	1043
GsuI	CTGGAG	1 cut(s)	811
HhaI	GCGC	1 cut(s)	390
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	881
HindII	GTYRAC	1 cut(s)	881
HphI	GGTGA	2 cut(s)	346, 941
Hpy166II	GTNNAC	2 cut(s)	46, 881
Hpy188I	TCNGA	8 cut(s)	247, 331, 445, 718, 748, 772, 889, 1132
Hpy188III	TCNNGA	3 cut(s)	456, 1008, 1115
Hpy8I	GTNNAC	2 cut(s)	46, 881
HpyAV	CCTTC	3 cut(s)	346, 650, 1009
HpyCH4III	ACNGT	5 cut(s)	103, 133, 608, 795, 968
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	8 cut(s)	161, 172, 405, 585, 835, 839, 862, 1049
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
HpyF3I	CTNAG	2 cut(s)	261, 415
HpySE526I	ACGT	1 cut(s)	954
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	118, 410, 815
LguI	GCTCTTC	1 cut(s)	927
Lsp1109I	GCAGC	1 cut(s)	1054
LweI	GCATC	2 cut(s)	601, 1072
MaeI	CTAG	2 cut(s)	705, 1147
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	2 cut(s)	185, 620
MalI	GATC	3 cut(s)	120, 412, 817
MboI	GATC	3 cut(s)	118, 410, 815
MboII	GAAGA	6 cut(s)	92, 128, 183, 323, 944, 1103
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	2 cut(s)	410, 815
MluCI	AATT	9 cut(s)	53, 107, 256, 493, 590, 729, 840, 987, 1140
MlyI	GAGTC	4 cut(s)	182, 809, 818, 1105
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	5 cut(s)	67, 325, 424, 672, 898
MroXI	GAANNNNTTC	2 cut(s)	936, 1015
MseI	TTAA	4 cut(s)	105, 147, 564, 732
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	653
MspR9I	CCNGG	2 cut(s)	95, 534
MunI	CAATTG	1 cut(s)	840
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	2 cut(s)	95, 534
MwoI	GCNNNNNNNGC	4 cut(s)	178, 434, 477, 545
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	3 cut(s)	118, 410, 815
NheI	GCTAGC	1 cut(s)	704
NmuCI	GTSAC	2 cut(s)	185, 620
NspI	RCATGY	4 cut(s)	296, 394, 441, 839
PaeI	GCATGC	2 cut(s)	441, 839
PaeR7I	CTCGAG	1 cut(s)	902
PciI	ACATGT	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	927
PctI	GAATGC	1 cut(s)	706
PdmI	GAANNNNTTC	2 cut(s)	936, 1015
PfeI	GAWTC	6 cut(s)	59, 326, 398, 671, 1094, 1127
PkrI	GCNGC	1 cut(s)	1044
PleI	GAGTC	4 cut(s)	182, 808, 818, 1105
PmaCI	CACGTG	1 cut(s)	955
PmlI	CACGTG	1 cut(s)	955
PpsI	GAGTC	4 cut(s)	182, 808, 818, 1105
Ppu21I	YACGTR	1 cut(s)	955
PscI	ACATGT	1 cut(s)	292
PsiI	TTATAA	2 cut(s)	278, 641
Psp6I	CCWGG	2 cut(s)	93, 532
PspCI	CACGTG	1 cut(s)	955
PspGI	CCWGG	2 cut(s)	93, 532
PspXI	VCTCGAGB	1 cut(s)	902
PsuI	RGATCY	2 cut(s)	410, 815
RsaI	GTAC	4 cut(s)	47, 92, 126, 452
RsaNI	GTAC	4 cut(s)	46, 91, 125, 451
RseI	CAYNNNNRTG	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	927
SaqAI	TTAA	4 cut(s)	105, 147, 564, 732
SatI	GCNGC	1 cut(s)	1043
Sau3AI	GATC	3 cut(s)	118, 410, 815
SchI	GAGTC	4 cut(s)	182, 809, 818, 1105
ScrFI	CCNGG	2 cut(s)	95, 534
SfaNI	GCATC	2 cut(s)	601, 1072
SfcI	CTRYAG	1 cut(s)	648
Sfr274I	CTCGAG	1 cut(s)	902
SlaI	CTCGAG	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	454, 902
SmoI	CTYRAG	2 cut(s)	454, 902
SphI	GCATGC	2 cut(s)	441, 839
Sse9I	AATT	9 cut(s)	53, 107, 256, 493, 590, 729, 840, 987, 1140
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	853
SspMI	CTAG	2 cut(s)	705, 1147
StyD4I	CCNGG	2 cut(s)	93, 532
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	5 cut(s)	103, 133, 608, 795, 968
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	2 cut(s)	806, 903
TasI	AATT	9 cut(s)	53, 107, 256, 493, 590, 729, 840, 987, 1140
TatI	WGTACW	1 cut(s)	450
TfiI	GAWTC	6 cut(s)	59, 326, 398, 671, 1094, 1127
Tru1I	TTAA	4 cut(s)	105, 147, 564, 732
Tru9I	TTAA	4 cut(s)	105, 147, 564, 732
TscAI	CASTG	3 cut(s)	592, 835, 931
TseFI	GTSAC	2 cut(s)	185, 620
TseI	GCWGC	1 cut(s)	1042
Tsp45I	GTSAC	2 cut(s)	185, 620
TspDTI	ATGAA	7 cut(s)	183, 606, 615, 648, 804, 929, 938
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	3 cut(s)	592, 835, 931
XapI	RAATTY	6 cut(s)	53, 107, 493, 590, 987, 1140
XceI	RCATGY	4 cut(s)	296, 394, 441, 839
XhoI	CTCGAG	1 cut(s)	902
XmnI	GAANNNNTTC	2 cut(s)	936, 1015
XspI	CTAG	2 cut(s)	705, 1147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.