Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004927

Physical Location & Seq

Genomic Coordinates Reverse (-)

41747726 .. 41751547

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGCAGGATCAGAAGATATTGAATGATCAAGACGACGCCGAAGTTGAGGCACTGGAGCTTGTGCTTTTCCAAGTCTCTGAGTGCTACGTCTACTTGATACCACCGAGAAAAAGTGCAGCTTCGTACAGGGCTGATGAATGGGATGTAAACAAATGGGTTTGGGAAGGAATATTGAAAGTCATTAGCAAAGGAGAAGATTGCATTATCAGACTTGAAGAGAAGAACACTGGTGAACTATATGCTCGGGCATTTTTAAGAAAAGGAGAGCCACATCCAGTTGAACCTGTAATTGATAGCAGCAGATACTTTGTTCTTCGTGTAGAGGAGAATATTGATGGTCGACTTCGGCATGCTTTCATTGGCCTAGGATTTCGAGAAAGAACAGAAGCTTATGATTTCCAAGCAGCCCTGCATGATCACTTGAAATATCTAAACAAGAAGAAAACTGCGGAAGAGATGGAACAGAAATTTCAGCAAACTTCATCAGTTGATTACAGCTTAAAAGAGGGGGAGACTCTTGTACTGCAATTAAAAAGTAACAGTTCTGAAGGTGTGAAGTCCAAGCTCTCAGAGCAGGGAGTGAGCAATTCGCCACCCGCGAAAAAGAGTAACCAAAAAGAGTCCTTGATCTGTATCAAACCACTACCACCTCCTCCAGGACCACTCTCTCCTTCTACGAATGTCCTGAAGTCTCCCTCAAACCCACCAAATCTGGCTCTCGAGGGAGCTTCTAAACTTCCAGAATCAGTGGCAGATGATTCCAAAGAAATGAATGCTTCTGCAAATCAAAGCACGCAAGAAATACCAGATGATGACTTTGGGGATTTTCAGGCTGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006873 GO:0006885 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015238 GO:0015318 GO:0015562 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0051716 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0080139 GO:0098656 GO:0098660 GO:0098661 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

281

Amino Acids

31.48

Weight (kDa)

4.93

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1681	PF07933	20 - 179	2.1e-52	Protein of unknown function (DUF1681)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15460 AT1G15460 AT1G15460 AT1G15460 AT1G74810 AT1G74810 AT1G74810 AT1G74810 AT1G74810 AT1G74810 AT1G74810
fragaria_vesca	FvH4_6g30530 FvH4_6g30530
malus_domestica	MD09G1219100.v1.1 MD17G1202200.v1.1
prunus_persica	Prupe.3G077900_v2.0.a1 Prupe.3G077900_v2.0.a1
pyrus_communis	pycom17g20650
rosa_chinensis	RchiOBHm_Chr2g0136951
rosa_laevigata	RLG00000019590
rosa_multiflora	Rmu_sc0001374.1_g000070
rosa_roxburghii	Rroxscaffold_2G00107860
rosa_rugosa	Rorug02G0335500 Rorug02G0335500 Rorug02G0335500 Rorug02G0335600
rosa_samantha	Rh2AG385500 Rh2BG392500 Rh2CG372700
rosa_wichuraiana	Rw2G031530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 343
AccII	CGCG	1 cut(s)	602
AciI	CCGC	2 cut(s)	452, 600
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	2 cut(s)	570, 710
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	128, 525
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	5 cut(s)	25, 178, 218, 284, 427
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	6 cut(s)	61, 122, 392, 501, 568, 731
AluI	AGCT	6 cut(s)	61, 122, 392, 501, 568, 731
Alw26I	GTCTC	3 cut(s)	82, 509, 699
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	2 cut(s)	246, 722
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	4 cut(s)	119, 300, 407, 836
ApoI	RAATTY	1 cut(s)	470
AspA2I	CCTAGG	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	2 cut(s)	246, 722
AvaII	GGWCC	1 cut(s)	662
AvrII	CCTAGG	1 cut(s)	367
BbvI	GCAGC	4 cut(s)	131, 312, 419, 823
BccI	CCATC	2 cut(s)	332, 454
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	2 cut(s)	28, 418
BcoDI	GTCTC	3 cut(s)	82, 509, 699
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	4 cut(s)	120, 301, 408, 837
BlnI	CCTAGG	1 cut(s)	367
BlsI	GCNGC	4 cut(s)	121, 302, 409, 838
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	2 cut(s)	246, 722
BmgT120I	GGNCC	1 cut(s)	662
BmrFI	CCNGG	1 cut(s)	660
BpmI	CTGGAG	2 cut(s)	77, 642
BsaBI	GATNNNNATC	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	3 cut(s)	60, 235, 278
Bse8I	GATNNNNATC	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	2 cut(s)	151, 274
BseJI	GATNNNNATC	1 cut(s)	635
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	72, 585
BseNI	ACTGG	3 cut(s)	60, 235, 278
BseRI	GAGGAG	2 cut(s)	341, 645
BseXI	GCAGC	4 cut(s)	131, 312, 419, 823
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	1 cut(s)	366
BsiHKCI	CYCGRG	2 cut(s)	246, 722
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	3 cut(s)	82, 509, 699
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	1 cut(s)	366
BsoBI	CYCGRG	2 cut(s)	246, 722
Bsp143I	GATC	4 cut(s)	10, 28, 418, 630
BspACI	CCGC	2 cut(s)	452, 600
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	73, 584
BspFNI	CGCG	1 cut(s)	602
BspPI	GGATC	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	60, 235, 278
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	4 cut(s)	10, 28, 418, 630
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	2 cut(s)	213, 450
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	354, 797
BstDEI	CTNAG	2 cut(s)	81, 571
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	151, 274
BstFNI	CGCG	1 cut(s)	602
BstKTI	GATC	4 cut(s)	13, 31, 421, 633
BstMAI	GTCTC	3 cut(s)	82, 509, 699
BstMBI	GATC	4 cut(s)	10, 28, 418, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNI	CCWGG	1 cut(s)	660
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	658
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	4 cut(s)	131, 312, 419, 823
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	151, 274
BtsIMutI	CAGTG	3 cut(s)	53, 228, 756
Cac8I	GCNNGC	2 cut(s)	354, 797
Cfr13I	GGNCC	1 cut(s)	662
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	127, 524
CviAII	CATG	2 cut(s)	353, 416
CviQI	GTAC	2 cut(s)	127, 524
DdeI	CTNAG	2 cut(s)	81, 571
DpnI	GATC	4 cut(s)	12, 30, 420, 632
DpnII	GATC	4 cut(s)	10, 28, 418, 630
Eam1104I	CTCTTC	2 cut(s)	213, 450
EarI	CTCTTC	2 cut(s)	213, 450
Eco130I	CCWWGG	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	570, 710
Eco88I	CYCGRG	2 cut(s)	246, 722
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	2 cut(s)	356, 419
FaiI	YATR	5 cut(s)	241, 243, 354, 396, 417
FalI	AAGNNNNNCTT	2 cut(s)	106, 138
FatI	CATG	2 cut(s)	352, 415
FauI	CCCGC	1 cut(s)	607
FbaI	TGATCA	2 cut(s)	28, 418
FblI	GTMKAC	2 cut(s)	93, 343
Fnu4HI	GCNGC	4 cut(s)	120, 301, 408, 837
FokI	GGATG	2 cut(s)	158, 261
Fsp4HI	GCNGC	4 cut(s)	120, 301, 408, 837
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	4 cut(s)	120, 301, 408, 837
GsuI	CTGGAG	2 cut(s)	77, 642
HaeIII	GGCC	1 cut(s)	366
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	356, 419
HincII	GTYRAC	1 cut(s)	344
HindII	GTYRAC	1 cut(s)	344
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	4 cut(s)	517, 623, 746, 761
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	4 cut(s)	94, 151, 236, 344
Hpy188I	TCNGA	5 cut(s)	15, 82, 212, 550, 574
Hpy188III	TCNNGA	5 cut(s)	32, 377, 688, 722, 743
Hpy8I	GTNNAC	4 cut(s)	94, 151, 236, 344
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	161, 545, 684
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	5 cut(s)	119, 204, 415, 529, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
HpyF3I	CTNAG	2 cut(s)	81, 571
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	356, 419
Ksp22I	TGATCA	2 cut(s)	28, 418
Kzo9I	GATC	4 cut(s)	10, 28, 418, 630
LmnI	GCTCC	3 cut(s)	4, 58, 728
Lsp1109I	GCAGC	4 cut(s)	131, 312, 419, 823
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	539, 611
MalI	GATC	4 cut(s)	12, 30, 420, 632
MboI	GATC	4 cut(s)	10, 28, 418, 630
MboII	GAAGA	7 cut(s)	28, 209, 230, 235, 308, 454, 467
MluCI	AATT	4 cut(s)	291, 470, 530, 589
MlyI	GAGTC	2 cut(s)	511, 632
MnlI	CCTC	7 cut(s)	43, 319, 502, 663, 666, 709, 718
MseI	TTAA	4 cut(s)	257, 503, 533, 844
MspR9I	CCNGG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	660
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	1 cut(s)	574
NdeII	GATC	4 cut(s)	10, 28, 418, 630
NlaIII	CATG	2 cut(s)	356, 419
NspI	RCATGY	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	356
PaeR7I	CTCGAG	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	599
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	2 cut(s)	746, 761
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	4 cut(s)	121, 302, 409, 838
PleI	GAGTC	2 cut(s)	511, 631
PpsI	GAGTC	2 cut(s)	511, 631
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspPI	GGNCC	1 cut(s)	662
RsaI	GTAC	2 cut(s)	128, 525
RsaNI	GTAC	2 cut(s)	127, 524
SalI	GTCGAC	1 cut(s)	342
SaqAI	TTAA	4 cut(s)	257, 503, 533, 844
SatI	GCNGC	4 cut(s)	120, 301, 408, 837
Sau3AI	GATC	4 cut(s)	10, 28, 418, 630
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	2 cut(s)	511, 632
ScrFI	CCNGG	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	722
SinI	GGWCC	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	1 cut(s)	356
Sse9I	AATT	4 cut(s)	291, 470, 530, 589
SsiI	CCGC	2 cut(s)	452, 600
SspI	AATATT	2 cut(s)	174, 334
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	343, 376, 723
TasI	AATT	4 cut(s)	291, 470, 530, 589
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	746, 761
Tru1I	TTAA	4 cut(s)	257, 503, 533, 844
Tru9I	TTAA	4 cut(s)	257, 503, 533, 844
TscAI	CASTG	3 cut(s)	60, 235, 756
TseI	GCWGC	4 cut(s)	119, 300, 407, 836
TspDTI	ATGAA	4 cut(s)	153, 349, 474, 788
TspRI	CASTG	3 cut(s)	60, 235, 756
VpaK11BI	GGWCC	1 cut(s)	662
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	356
XhoI	CTCGAG	1 cut(s)	722
XmaJI	CCTAGG	1 cut(s)	367
XmiI	GTMKAC	2 cut(s)	93, 343
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.