Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010424

Physical Location & Seq

Genomic Coordinates Reverse (-)

48713470 .. 48716923

Gene Structure 3454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0381500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGGCTGTGGGAGAGATTACCGAGGCTATGAACAACGTCACCATCAACAACTCAGATTCACACAAGAAGAACCGAATTCAGGTCTCGAACACCAAAAAGCCCCTCTTCTTCTACGTCAATCTTGCCAAGAGGTATATGCAGCAGTACAATGAGGTGGAGCTATCTGCCTTAGGAATGGCTATTGCCACAGTTGTCACAATTGCAGAAATTCTCAAGAACAATGGGCTGGCTGTTGAGAAAAAAATCATGACATCAACTGTTGACATAAAGGATGATTCTAGAGGGAGACCAGTCCAAAAAGCCAAGATTGAGATCTTGCTTGGGAAGACAGCAAATTTCGATGACTTGATGGCTGCAGCTGCTGAGGAGAGGGAACTTGCAGCAGCGGCAGAGGCTGAGGAGCAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00052 ko00511 ko00531 ko00600 ko00604 ko01100 ko04142 map00052 map00511 map00531 map00600 map00604 map01100 map04142

Pfam Domains

Protein Families

BetaGal_dom4_5 Glyco_hydro_35

Protein Analysis

137

Amino Acids

15.09

Weight (kDa)

5.27

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	25 - 86	1.4e-13	Alba

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72990 AT1G72990 AT1G72990 AT1G72990
fragaria_vesca	FvH4_6g33540 FvH4_6g33540 FvH4_6g33540
malus_domestica	MD09G1192500.v1.1
prunus_persica	Prupe.3G048800_v2.0.a1 Prupe.3G048800_v2.0.a1
pyrus_communis	pycom09g10910
rosa_chinensis	RchiOBHm_Chr2g0143451
rosa_laevigata	RLG00000020036
rosa_multiflora	Rmu_sc0003507.1_g000021
rosa_roxburghii	Rroxscaffold_2G00101830
rosa_rugosa	Rorug02G0381500
rosa_samantha	Rh2AG434500 Rh2BG442300 Rh2CG420400 Rh2DG452500
rosa_wichuraiana	Rw2G035420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	389
AcsI	RAATTY	3 cut(s)	78, 210, 337
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	82
AluBI	AGCT	3 cut(s)	163, 362, 411
AluI	AGCT	3 cut(s)	163, 362, 411
Alw26I	GTCTC	2 cut(s)	91, 283
AlwNI	CAGNNNCTG	2 cut(s)	365, 398
ApeKI	GCWGC	6 cut(s)	142, 356, 359, 362, 383, 386
ApoI	RAATTY	3 cut(s)	78, 210, 337
AsuHPI	GGTGA	1 cut(s)	34
AxyI	CCTNAGG	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	335
BbvCI	CCTCAGC	2 cut(s)	366, 399
BbvI	GCAGC	6 cut(s)	154, 343, 349, 371, 395, 398
BccI	CCATC	2 cut(s)	53, 346
BcoDI	GTCTC	2 cut(s)	91, 283
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	7 cut(s)	143, 357, 360, 363, 384, 387, 390
BlsI	GCNGC	7 cut(s)	144, 358, 361, 364, 385, 388, 391
BpiI	GAAGAC	1 cut(s)	335
Bpu10I	CCTNAGC	2 cut(s)	366, 399
BpuEI	CTTGAG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	314
BsaI	GGTCTC	2 cut(s)	91, 283
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	3 cut(s)	69, 357, 390
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	6 cut(s)	154, 343, 349, 371, 395, 398
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	91, 283
Bso31I	GGTCTC	2 cut(s)	91, 283
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	3 cut(s)	68, 358, 391
BspHI	TCATGA	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	361
BspTNI	GGTCTC	2 cut(s)	91, 283
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	193, 262
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	4 cut(s)	55, 172, 366, 399
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	2 cut(s)	91, 283
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 389, 395
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	6 cut(s)	154, 343, 349, 371, 395, 398
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
Bsu36I	CCTNAGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	2 cut(s)	365, 398
CciI	TCATGA	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	4 cut(s)	55, 172, 366, 399
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco31I	GGTCTC	2 cut(s)	91, 283
Eco81I	CCTNAGG	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	78
FaeI	CATG	1 cut(s)	253
FaiI	YATR	5 cut(s)	32, 138, 140, 251, 269
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	7 cut(s)	143, 357, 360, 363, 384, 387, 390
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	7 cut(s)	143, 357, 360, 363, 384, 387, 390
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	7 cut(s)	143, 357, 360, 363, 384, 387, 390
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	59, 278
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	4 cut(s)	88, 217, 250, 282
Hpy8I	GTNNAC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	193, 262
HpyCH4IV	ACGT	2 cut(s)	39, 117
HpyCH4V	TGCA	4 cut(s)	142, 206, 359, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 389, 395
HpyF3I	CTNAG	4 cut(s)	55, 172, 366, 399
HpySE526I	ACGT	2 cut(s)	39, 117
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	160, 403
LpnPI	CCDG	3 cut(s)	68, 215, 306
Lsp1109I	GCAGC	6 cut(s)	154, 343, 349, 371, 395, 398
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	39, 117
MaeIII	GTNAC	2 cut(s)	40, 196
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	4 cut(s)	82, 100, 103, 340
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	315
MluCI	AATT	4 cut(s)	78, 201, 210, 337
MnlI	CCTC	9 cut(s)	19, 116, 126, 148, 278, 361, 366, 388, 394
MspA1I	CMGCKG	2 cut(s)	362, 389
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	362, 389, 395
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	40, 196
PagI	TCATGA	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	59, 278
PkrI	GCNGC	7 cut(s)	144, 358, 361, 364, 385, 388, 391
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	2 cut(s)	365, 398
PsuI	RGATCY	1 cut(s)	315
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	7 cut(s)	143, 357, 360, 363, 384, 387, 390
Sau3AI	GATC	1 cut(s)	315
SetI	ASST	8 cut(s)	42, 87, 120, 137, 159, 165, 364, 413
SfcI	CTRYAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	4 cut(s)	78, 201, 210, 337
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	193, 262
TaiI	ACGT	2 cut(s)	42, 120
TaqI	TCGA	2 cut(s)	89, 342
TasI	AATT	4 cut(s)	78, 201, 210, 337
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	59, 278
TseFI	GTSAC	2 cut(s)	40, 196
TseI	GCWGC	6 cut(s)	142, 356, 359, 362, 383, 386
Tsp45I	GTSAC	2 cut(s)	40, 196
TspDTI	ATGAA	1 cut(s)	47
XapI	RAATTY	3 cut(s)	78, 210, 337
XbaI	TCTAGA	1 cut(s)	281
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.